Rorug01G0101300
ERF Family

Belongs to the class I-like SAM-binding methyltransferase superfamily. mRNA cap 0 methyltransferase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000001
OG0004405
Physical Location & Seq
Forward (+)
16879138 .. 16880048
911 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug01G0101300.1

Sequence Viewer

Length: 804 bp
ATGCCTGCTGAGAGAAATGTGGTAAGTTGGAATGCCATGATTGGTGGGTACTGGAGAAATGGGGATGTGGCAACTGCATTGGTTTTGTTTGAGAAGATGTCAGTGCGGACGTATGTGACTTGGGCTGACATGATCACCGGGACTGGAGATACTGTTAGTGCTAGGCGCTTCTTTGATCAGGTTCCAATGGAGTTGAAGAATGTGATTACGTGGACGGTGATGGTTGATGGGTATTGTAGCAATGGGCAGATGGAGATGGCGAGGCAAGTTTTCGAGGCAATGCCTATGCCCCAGCGCAATCACTTCGTTTCCGGGTATTGCAAGCTAGGTGATGTTAAGGAGGCTAAGATCGTTTTCGATAGAATCCCAGTCCGGAACTTGTCTGGGCTATTAGATGTTGGCAAGGATATACATAACATGTTGAGTCATAAAAGGATAAAGCTTAATCAGATTGTTCTCAATGCACTTGTAGACATGTATGCAAAATGTGGCGACTTGATCAATGCAAGGTTGATCTTTGATGAGATGACTGAGAGGAACAGTGCTTGTTGGAATGCTATGATTTCAAGCATGGCTATTCATGGACAGTGCAAGGAGGCTCTTGAATTGTATAGCAGAATGGAGGATTCAAATGAAAAGCCTGATGAGATAACCTTTCTTTCTCTTCTGTCAGCTTGTGCGCATGGAGGTTTAGTAGATGAAGGCATGGAACTTTTCTCCAAGATGCAGAAGAAATATGGTTTGGAAGCAGGAATTAAGCATTATGGGTGCTTAGTTGACCTTTTGCGTCGGCTGGAAGGTTAA

Protein Analysis

267

Amino Acids

30.17

Weight (kDa)

6.1

Isoelectric Point (pI)

33.22

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PPR_2 PF13041 5 - 35 7.6e-07 PPR repeat family
PPR_1 PF12854 5 - 34 5.8e-06 PPR repeat
PPR PF01535 8 - 34 2.1e-06 PPR repeat
PPR_2 PF13041 66 - 94 7.5e-07 PPR repeat family
PPR_1 PF12854 67 - 94 1.4e-06 PPR repeat
PPR PF01535 69 - 94 2.2e-07 PPR repeat
PPR_2 PF13041 180 - 228 3.1e-11 PPR repeat family
PPR PF01535 183 - 210 2e-06 PPR repeat
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 681
AccI GTMKAC 1 cut(s) 471
AccIII TCCGGA 1 cut(s) 372
AciI CCGC 1 cut(s) 106
AfaI GTAC 1 cut(s) 50
AflIII ACRYGT 2 cut(s) 417, 474
AgsI TTSAA 4 cut(s) 196, 567, 605, 630
AjuI GAANNNNNNNTTGG 2 cut(s) 725, 757
AluBI AGCT 3 cut(s) 325, 442, 674
AluI AGCT 3 cut(s) 325, 442, 674
Aor13HI TCCGGA 1 cut(s) 372
AspLEI GCGC 3 cut(s) 168, 297, 682
AsuC2I CCSGG 2 cut(s) 139, 313
AsuHPI GGTGA 3 cut(s) 127, 229, 341
BccI CCATC 4 cut(s) 214, 221, 244, 250
BcgI CGANNNNNNTGC 2 cut(s) 286, 320
BclI TGATCA 3 cut(s) 132, 175, 498
BcnI CCSGG 2 cut(s) 139, 313
BfaI CTAG 2 cut(s) 162, 326
BfoI RGCGCY 1 cut(s) 169
Bme1390I CCNGG 2 cut(s) 139, 313
BmiI GGNNCC 1 cut(s) 183
BmrFI CCNGG 2 cut(s) 139, 313
BmrI ACTGGG 1 cut(s) 362
BmsI GCATC 1 cut(s) 714
BmuI ACTGGG 1 cut(s) 362
BpmI CTGGAG 2 cut(s) 73, 165
BpuMI CCSGG 2 cut(s) 139, 313
BsaAI YACGTR 1 cut(s) 210
BsaWI WCCGGW 1 cut(s) 372
BsaXI ACNNNNNCTCC 4 cut(s) 138, 168, 678, 708
Bse1I ACTGG 3 cut(s) 56, 148, 368
Bse3DI GCAATG 2 cut(s) 247, 285
BseAI TCCGGA 1 cut(s) 372
BseGI GGATG 1 cut(s) 70
BseMI GCAATG 2 cut(s) 247, 285
BseMII CTCAG 1 cut(s) 522
BseNI ACTGG 3 cut(s) 56, 148, 368
BseYI CCCAGC 1 cut(s) 291
BsiSI CCGG 3 cut(s) 138, 312, 373
BslFI GGGAC 1 cut(s) 154
BsmFI GGGAC 1 cut(s) 154
BsmI GAATGC 2 cut(s) 37, 559
Bsp13I TCCGGA 1 cut(s) 372
Bsp143I GATC 5 cut(s) 132, 175, 348, 498, 513
BspACI CCGC 1 cut(s) 106
BspCNI CTCAG 1 cut(s) 523
BspEI TCCGGA 1 cut(s) 372
BspLI GGNNCC 1 cut(s) 183
BsrDI GCAATG 2 cut(s) 247, 285
BsrI ACTGG 3 cut(s) 56, 148, 368
BssMI GATC 5 cut(s) 132, 175, 348, 498, 513
Bst4CI ACNGT 4 cut(s) 154, 217, 542, 588
Bst6I CTCTTC 1 cut(s) 669
BstBAI YACGTR 1 cut(s) 210
BstC8I GCNNGC 2 cut(s) 6, 323
BstDEI CTNAG 4 cut(s) 9, 345, 531, 772
BstF5I GGATG 1 cut(s) 70
BstH2I RGCGCY 1 cut(s) 169
BstHHI GCGC 3 cut(s) 168, 297, 682
BstKTI GATC 5 cut(s) 135, 178, 351, 501, 516
BstMBI GATC 5 cut(s) 132, 175, 348, 498, 513
BstNSI RCATGY 2 cut(s) 421, 478
BstSCI CCNGG 2 cut(s) 137, 311
BtsCI GGATG 1 cut(s) 70
BtsIMutI CAGTG 3 cut(s) 108, 547, 593
Cac8I GCNNGC 2 cut(s) 6, 323
CfoI GCGC 3 cut(s) 168, 297, 682
CseI GACGC 1 cut(s) 776
Csp6I GTAC 1 cut(s) 49
CviAII CATG 8 cut(s) 37, 130, 418, 475, 571, 581, 683, 706
CviQI GTAC 1 cut(s) 49
DdeI CTNAG 4 cut(s) 9, 345, 531, 772
DpnI GATC 5 cut(s) 134, 177, 350, 500, 515
DpnII GATC 5 cut(s) 132, 175, 348, 498, 513
Eam1104I CTCTTC 1 cut(s) 669
EarI CTCTTC 1 cut(s) 669
FaeI CATG 8 cut(s) 40, 133, 421, 478, 574, 584, 686, 709
FaqI GGGAC 1 cut(s) 154
FatI CATG 8 cut(s) 36, 129, 417, 474, 570, 580, 682, 705
FbaI TGATCA 3 cut(s) 132, 175, 498
FblI GTMKAC 1 cut(s) 471
FokI GGATG 1 cut(s) 77
FspAI RTGCGCAY 1 cut(s) 681
FspBI CTAG 2 cut(s) 162, 326
FspI TGCGCA 1 cut(s) 681
GlaI GCGC 3 cut(s) 167, 296, 681
GsaI CCCAGC 1 cut(s) 295
GsuI CTGGAG 2 cut(s) 73, 165
HaeII RGCGCY 1 cut(s) 169
HapII CCGG 3 cut(s) 138, 312, 373
HgaI GACGC 1 cut(s) 776
HhaI GCGC 3 cut(s) 168, 297, 682
Hin1II CATG 8 cut(s) 40, 133, 421, 478, 574, 584, 686, 709
Hin6I GCGC 3 cut(s) 166, 295, 680
HinP1I GCGC 3 cut(s) 166, 295, 680
HincII GTYRAC 1 cut(s) 778
HindII GTYRAC 1 cut(s) 778
HindIII AAGCTT 1 cut(s) 440
HinfI GANTC 3 cut(s) 363, 424, 626
HpaII CCGG 3 cut(s) 138, 312, 373
HphI GGTGA 3 cut(s) 127, 229, 341
Hpy166II GTNNAC 3 cut(s) 213, 472, 778
Hpy188I TCNGA 1 cut(s) 450
Hpy188III TCNNGA 2 cut(s) 373, 602
Hpy8I GTNNAC 3 cut(s) 213, 472, 778
Hpy99I CGWCG 1 cut(s) 792
HpyAV CCTTC 2 cut(s) 695, 791
HpyCH4III ACNGT 4 cut(s) 154, 217, 542, 588
HpyCH4IV ACGT 2 cut(s) 110, 209
HpyCH4V TGCA 7 cut(s) 77, 321, 464, 482, 506, 591, 727
HpyF3I CTNAG 4 cut(s) 9, 345, 531, 772
HpySE526I ACGT 2 cut(s) 110, 209
Hsp92II CATG 8 cut(s) 40, 133, 421, 478, 574, 584, 686, 709
HspAI GCGC 3 cut(s) 166, 295, 680
Kpn2I TCCGGA 1 cut(s) 372
Ksp22I TGATCA 3 cut(s) 132, 175, 498
Kzo9I GATC 5 cut(s) 132, 175, 348, 498, 513
LweI GCATC 1 cut(s) 714
MaeI CTAG 2 cut(s) 162, 326
MaeII ACGT 2 cut(s) 110, 209
MaeIII GTNAC 1 cut(s) 115
MalI GATC 5 cut(s) 134, 177, 350, 500, 515
MboI GATC 5 cut(s) 132, 175, 348, 498, 513
MboII GAAGA 4 cut(s) 106, 208, 656, 742
MluCI AATT 2 cut(s) 605, 753
MlyI GAGTC 1 cut(s) 433
MmeI TCCRAC 2 cut(s) 8, 530
MnlI CCTC 7 cut(s) 255, 268, 334, 528, 589, 616, 680
MroI TCCGGA 1 cut(s) 372
MseI TTAA 4 cut(s) 336, 444, 756, 802
MspI CCGG 3 cut(s) 138, 312, 373
MspR9I CCNGG 2 cut(s) 139, 313
Mva1269I GAATGC 2 cut(s) 37, 559
NciI CCSGG 2 cut(s) 139, 313
NdeII GATC 5 cut(s) 132, 175, 348, 498, 513
NlaIII CATG 8 cut(s) 40, 133, 421, 478, 574, 584, 686, 709
NlaIV GGNNCC 1 cut(s) 183
NmuCI GTSAC 1 cut(s) 115
NsbI TGCGCA 1 cut(s) 681
NspI RCATGY 2 cut(s) 421, 478
PciI ACATGT 2 cut(s) 417, 474
PctI GAATGC 2 cut(s) 37, 559
PfeI GAWTC 2 cut(s) 363, 626
PleI GAGTC 1 cut(s) 432
PpsI GAGTC 1 cut(s) 432
Ppu21I YACGTR 1 cut(s) 210
PscI ACATGT 2 cut(s) 417, 474
PspFI CCCAGC 1 cut(s) 291
PspN4I GGNNCC 1 cut(s) 183
RsaI GTAC 1 cut(s) 50
RsaNI GTAC 1 cut(s) 49
SaqAI TTAA 4 cut(s) 336, 444, 756, 802
Sau3AI GATC 5 cut(s) 132, 175, 348, 498, 513
SchI GAGTC 1 cut(s) 433
ScrFI CCNGG 2 cut(s) 139, 313
SfaNI GCATC 1 cut(s) 714
Sse9I AATT 2 cut(s) 605, 753
SsiI CCGC 1 cut(s) 106
SspMI CTAG 2 cut(s) 162, 326
StyD4I CCNGG 2 cut(s) 137, 311
TaaI ACNGT 4 cut(s) 154, 217, 542, 588
TaiI ACGT 2 cut(s) 113, 212
TaqI TCGA 2 cut(s) 273, 357
TasI AATT 2 cut(s) 605, 753
TfiI GAWTC 2 cut(s) 363, 626
Tru1I TTAA 4 cut(s) 336, 444, 756, 802
Tru9I TTAA 4 cut(s) 336, 444, 756, 802
TscAI CASTG 3 cut(s) 108, 547, 593
TseFI GTSAC 1 cut(s) 115
Tsp45I GTSAC 1 cut(s) 115
TspDTI ATGAA 3 cut(s) 569, 648, 714
TspRI CASTG 3 cut(s) 108, 547, 593
XceI RCATGY 2 cut(s) 421, 478
XmiI GTMKAC 1 cut(s) 471
XspI CTAG 2 cut(s) 162, 326
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.