Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000002

Orthogroup ID

OG0004405

Physical Location & Seq

Genomic Coordinates Reverse (-)

29353249 .. 29356769

Gene Structure 3521 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_2G00105880.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 225 bp

ATGAAAAGACCAGAGTACGTAGAGTTAATGCGGAGGCTTGGTGCATTAGGTGACGGTAACCAAGATCAGAGTGCACTATCACAAGATGAATGGGAAGTAGCCTATTTGTACTTGTCATTTGTCTTGAGGAAGCGGGGCCAACCTGATCGGACTCAACCAAATGGTAGAACAGATAAAGGGAAGATGCATATATCAAAAGAGGACATATTGAACATTGAACTTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001510 GO:0003674 GO:0003824 GO:0004482 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005845 GO:0006139 GO:0006370 GO:0006396 GO:0006397 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008168 GO:0008170 GO:0008173 GO:0008174 GO:0008757 GO:0009451 GO:0009452 GO:0009987 GO:0010467 GO:0016070 GO:0016071 GO:0016556 GO:0016740 GO:0016741 GO:0032259 GO:0032991 GO:0034518 GO:0034641 GO:0036260 GO:0036265 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043414 GO:0044237 GO:0044238 GO:0044260 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0080009 GO:0090304 GO:0106005 GO:0140098 GO:1901360

KEGG Pathways

Metabolic & Signaling

ko03015 map03015

Pfam Domains

Protein Families

Pox_MCEL

Protein Analysis

74

Amino Acids

8.61

Weight (kDa)

6.56

Isoelectric Point (pI)

72.05

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
mRNA_G-N7_MeTrfase	PF03291	1 - 45	1.1e-07	mRNA (guanine-N(7))-methyltransferase domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0004405)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G20650 AT3G20650 AT3G20650
fragaria_vesca	FvH4_3g21511 FvH4_3g21511 FvH4_3g21511 FvH4_6g24821
malus_domestica	MD03G1215400.v1.1 MD11G1013800.v1.1 MD11G1230000.v1.1
prunus_persica	Prupe.4G197400_v2.0.a1
pyrus_communis	pycom03g16380 pycom11g20380
rosa_chinensis	RchiOBHm_Chr1g0332461 RchiOBHm_Chr5g0036961
rosa_laevigata	RLG00000019767 RLG00000029593 RLG00000029668 RLG00000033739
rosa_multiflora	Rmu_sc0000574.1_g000061 Rmu_sc0006147.1_g000007 Rmu_sc0007663.1_g000020 Rmu_sc0024051.1_g000002
rosa_roxburghii	Rroxscaffold_1G00043990 Rroxscaffold_2G00105880
rosa_rugosa	Rorug01G0101300 Rorug05G0159400
rosa_samantha	Rh1DG129900 Rh5DG261500
rosa_wichuraiana	Rw1G010160 Rw1G015570 Rw5G023160

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	31, 133
AfaI	GTAC	2 cut(s)	17, 110
AgsI	TTSAA	2 cut(s)	211, 218
Alw21I	GWGCWC	1 cut(s)	76
Alw44I	GTGCAC	1 cut(s)	72
AoxI	GGCC	1 cut(s)	136
ApaLI	GTGCAC	1 cut(s)	72
AspS9I	GGNCC	1 cut(s)	136
AsuHPI	GGTGA	1 cut(s)	62
BaeGI	GKGCMC	1 cut(s)	76
Bbv12I	GWGCWC	1 cut(s)	76
BmgT120I	GGNCC	1 cut(s)	136
BmiI	GGNNCC	1 cut(s)	137
BmsI	GCATC	1 cut(s)	174
BpuEI	CTTGAG	1 cut(s)	145
BsaAI	YACGTR	1 cut(s)	19
BsaXI	ACNNNNNCTCC	2 cut(s)	25, 55
BseSI	GKGCMC	1 cut(s)	76
BshFI	GGCC	1 cut(s)	138
BsiHKAI	GWGCWC	1 cut(s)	76
BsnI	GGCC	1 cut(s)	138
Bsp1286I	GDGCHC	1 cut(s)	76
Bsp143I	GATC	2 cut(s)	64, 145
BspACI	CCGC	2 cut(s)	31, 133
BspANI	GGCC	1 cut(s)	138
BspLI	GGNNCC	1 cut(s)	137
BssMI	GATC	2 cut(s)	64, 145
Bst4CI	ACNGT	1 cut(s)	56
BstBAI	YACGTR	1 cut(s)	19
BstEII	GGTNACC	1 cut(s)	56
BstKTI	GATC	2 cut(s)	67, 148
BstMBI	GATC	2 cut(s)	64, 145
BstPI	GGTNACC	1 cut(s)	56
BstSLI	GKGCMC	1 cut(s)	76
BstSNI	TACGTA	1 cut(s)	19
BsuRI	GGCC	1 cut(s)	138
Cfr13I	GGNCC	1 cut(s)	136
Csp6I	GTAC	2 cut(s)	16, 109
CviJI	RGCY	3 cut(s)	37, 101, 138
CviKI_1	RGCY	3 cut(s)	37, 101, 138
CviQI	GTAC	2 cut(s)	16, 109
DpnI	GATC	2 cut(s)	66, 147
DpnII	GATC	2 cut(s)	64, 145
Eco105I	TACGTA	1 cut(s)	19
Eco91I	GGTNACC	1 cut(s)	56
EcoO65I	GGTNACC	1 cut(s)	56
EcoT22I	ATGCAT	1 cut(s)	189
FaiI	YATR	3 cut(s)	189, 191, 206
FauI	CCCGC	1 cut(s)	126
HaeIII	GGCC	1 cut(s)	138
HinfI	GANTC	1 cut(s)	151
HphI	GGTGA	1 cut(s)	62
Hpy166II	GTNNAC	1 cut(s)	74
Hpy188I	TCNGA	2 cut(s)	69, 150
Hpy188III	TCNNGA	1 cut(s)	124
Hpy8I	GTNNAC	1 cut(s)	74
HpyCH4III	ACNGT	1 cut(s)	56
HpyCH4IV	ACGT	1 cut(s)	18
HpyCH4V	TGCA	3 cut(s)	44, 74, 187
HpySE526I	ACGT	1 cut(s)	18
Kzo9I	GATC	2 cut(s)	64, 145
LpnPI	CCDG	2 cut(s)	24, 156
LweI	GCATC	1 cut(s)	174
MaeII	ACGT	1 cut(s)	18
MaeIII	GTNAC	2 cut(s)	50, 56
MalI	GATC	2 cut(s)	66, 147
MboI	GATC	2 cut(s)	64, 145
MboII	GAAGA	1 cut(s)	193
MhlI	GDGCHC	1 cut(s)	76
MlyI	GAGTC	1 cut(s)	145
MnlI	CCTC	3 cut(s)	27, 120, 193
Mph1103I	ATGCAT	1 cut(s)	189
MseI	TTAA	1 cut(s)	26
NdeII	GATC	2 cut(s)	64, 145
NlaIV	GGNNCC	1 cut(s)	137
NmuCI	GTSAC	1 cut(s)	50
NsiI	ATGCAT	1 cut(s)	189
PleI	GAGTC	1 cut(s)	145
PpsI	GAGTC	1 cut(s)	145
Ppu21I	YACGTR	1 cut(s)	19
PspEI	GGTNACC	1 cut(s)	56
PspN4I	GGNNCC	1 cut(s)	137
PspPI	GGNCC	1 cut(s)	136
RsaI	GTAC	2 cut(s)	17, 110
RsaNI	GTAC	2 cut(s)	16, 109
SaqAI	TTAA	1 cut(s)	26
Sau3AI	GATC	2 cut(s)	64, 145
Sau96I	GGNCC	1 cut(s)	136
SchI	GAGTC	1 cut(s)	145
SduI	GDGCHC	1 cut(s)	76
SetI	ASST	3 cut(s)	21, 52, 145
SfaNI	GCATC	1 cut(s)	174
SgeI	CNNG	8 cut(s)	23, 50, 74, 95, 124, 136, 146, 155
SmlI	CTYRAG	1 cut(s)	124
SmoI	CTYRAG	1 cut(s)	124
SnaBI	TACGTA	1 cut(s)	19
SsiI	CCGC	2 cut(s)	31, 133
TaaI	ACNGT	1 cut(s)	56
TaiI	ACGT	1 cut(s)	21
TatI	WGTACW	1 cut(s)	108
Tru1I	TTAA	1 cut(s)	26
Tru9I	TTAA	1 cut(s)	26
TseFI	GTSAC	1 cut(s)	50
Tsp45I	GTSAC	1 cut(s)	50
TspDTI	ATGAA	2 cut(s)	17, 102
VneI	GTGCAC	1 cut(s)	72
Zsp2I	ATGCAT	1 cut(s)	189

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.