Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0004405

Physical Location & Seq

Genomic Coordinates Reverse (-)

7220733 .. 7224090

Gene Structure 3358 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT3G20650.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1113 bp

ATGAAACGAGGATTCTCCGATTCTCCTTCAAGCTCTGCTCCTCCTCCTTCTTCCAGATTCAAATCTAATCCCGAAGGTGATTCTCAGTTTCTGGAAGATGAGACTACAAAGAATTTTGCCCGGAAAGTTGCTGATCATTACAGTAGGAGAACAAACCAAACATTGGAAGAGCGAGAAGCTAGTCCCATCATTCATTTGAAGAAACTTAACAATTGGATTAAAAGTGTTTTGATCCAGCTTTATGCTCGTCCTGACGATGCTGTTCTCGACCTTGCCTGTGGGAAGGGTGGTGATTTGATCAAGTGGGATAAGGCGAGAATCGGGTACTATGTTGGAATTGATATTGCTGAAGGGTCGATTGAAGATTGTCGCACGCGTTATAACGGTGATGCAGACCATCATCAACGGCGTAAAAAGTTCAGTTTTCCGTCTCGATTATTATGTGGGGATTGTTTTGAGGTAGAGCTAGACAAGATTCTTGAAGAGGATGCCCCTTTTGATATCTGCAGTTGCCAGTTTGCTATGCATTACTCATGGACTACTGAGGCACGTGCACGACGAGCTTTGGCAAATGTTTCAGCTTTACTTCGTCCAGGAGGTGTCTTTATCGGAACAATGCCAGATGCCAATGTTATTATAAAAAAACTCAGAGAAGCTGAAGGTTTGGAGATTGGTAATAGTGTTTACTGGATTCGTTTTGGTGAAGAGTATTCCCAAAAGAAGTTCAAATCTAGCAGCCCATTTGGTATCGAATACGTGTTTCATCTCGAGGATGCTGTTGATTGTCCTGAATGGATTGTGCCCTTTAACGTCTTCAAGTCTTTAGCGGAGGAGTATGATTTAGAGTTGGTATTTGTGAAGAACTCCCACGAGTTTGTCCATGAGTATATGAAAAAGCCAGAGTTTGTCGAACTCATGAGAAGGCTTGGTGCTTTGGGTGATGGTAGCAATGATCAGAGCACATTATCAGCTGATGAATGGGAAGCTGCATATTTATACCTCTCTTTTGTCTTGAGAAAGAGGGGAGAATCAGATGGAGCTCGAAGGAGCGGGCGGAGGAAGAATGGGAAAATGAACTTGTCGAAAGATGATGTTTTGTATATCGATAGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001510 GO:0003674 GO:0003824 GO:0004482 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005845 GO:0006139 GO:0006370 GO:0006396 GO:0006397 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008168 GO:0008170 GO:0008173 GO:0008174 GO:0008757 GO:0009451 GO:0009452 GO:0009987 GO:0010467 GO:0016070 GO:0016071 GO:0016556 GO:0016740 GO:0016741 GO:0032259 GO:0032991 GO:0034518 GO:0034641 GO:0036260 GO:0036265 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043414 GO:0044237 GO:0044238 GO:0044260 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0080009 GO:0090304 GO:0106005 GO:0140098 GO:1901360

KEGG Pathways

Metabolic & Signaling

ko03015 map03015

Pfam Domains

Protein Families

Pox_MCEL

Protein Analysis

370

Amino Acids

42.24

Weight (kDa)

5.87

Isoelectric Point (pI)

52.94

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
mRNA_G-N7_MeTrfase	PF03291	32 - 341	4e-135	mRNA (guanine-N(7))-methyltransferase domain
Methyltransf_31	PF13847	85 - 209	9.5e-09	Methyltransferase domain
Methyltransf_25	PF13649	88 - 200	4.1e-10	Methyltransferase domain
Methyltransf_12	PF08242	89 - 202	8.5e-10	Methyltransferase domain
Methyltransf_11	PF08241	89 - 203	1.4e-08	Methyltransferase domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004405)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G20650 AT3G20650 AT3G20650
fragaria_vesca	FvH4_3g21511 FvH4_3g21511 FvH4_3g21511 FvH4_6g24821
malus_domestica	MD03G1215400.v1.1 MD11G1013800.v1.1 MD11G1230000.v1.1
prunus_persica	Prupe.4G197400_v2.0.a1
pyrus_communis	pycom03g16380 pycom11g20380
rosa_chinensis	RchiOBHm_Chr1g0332461 RchiOBHm_Chr5g0036961
rosa_laevigata	RLG00000019767 RLG00000029593 RLG00000029668 RLG00000033739
rosa_multiflora	Rmu_sc0000574.1_g000061 Rmu_sc0006147.1_g000007 Rmu_sc0007663.1_g000020 Rmu_sc0024051.1_g000002
rosa_roxburghii	Rroxscaffold_1G00043990 Rroxscaffold_2G00105880
rosa_rugosa	Rorug01G0101300 Rorug05G0159400
rosa_samantha	Rh1DG129900 Rh5DG261500
rosa_wichuraiana	Rw1G010160 Rw1G015570 Rw5G023160

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	381, 638
AccB7I	CCANNNNNTGG	1 cut(s)	163
AccBSI	CCGCTC	1 cut(s)	1050
AccII	CGCG	1 cut(s)	376
AciI	CCGC	3 cut(s)	827, 1050, 1054
AclWI	GGATC	1 cut(s)	226
AcsI	RAATTY	1 cut(s)	112
AcuI	CTGAAG	2 cut(s)	369, 678
AcvI	CACGTG	1 cut(s)	551
AfaI	GTAC	1 cut(s)	326
AfiI	CCNNNNNNNGG	1 cut(s)	163
AflIII	ACRYGT	2 cut(s)	374, 756
AgsI	TTSAA	7 cut(s)	30, 61, 199, 362, 482, 727, 817
AjnI	CCWGG	1 cut(s)	592
Alw21I	GWGCWC	3 cut(s)	556, 962, 1042
Alw26I	GTCTC	2 cut(s)	95, 435
Alw44I	GTGCAC	1 cut(s)	552
AlwI	GGATC	1 cut(s)	226
AlwNI	CAGNNNCTG	1 cut(s)	91
Ama87I	CYCGRG	1 cut(s)	767
ApaLI	GTGCAC	1 cut(s)	552
ApeKI	GCWGC	2 cut(s)	735, 986
ApoI	RAATTY	1 cut(s)	112
AsuC2I	CCSGG	1 cut(s)	121
AsuHPI	GGTGA	5 cut(s)	89, 302, 398, 713, 950
AvaI	CYCGRG	1 cut(s)	767
BaeGI	GKGCMC	2 cut(s)	556, 804
BanII	GRGCYC	1 cut(s)	1042
BauI	CACGAG	1 cut(s)	869
BbrPI	CACGTG	1 cut(s)	551
BbsI	GAAGAC	1 cut(s)	805
Bbv12I	GWGCWC	3 cut(s)	556, 962, 1042
BbvI	GCAGC	2 cut(s)	747, 973
BccI	CCATC	4 cut(s)	194, 405, 935, 1028
BceAI	ACGGC	1 cut(s)	422
BciT130I	CCWGG	1 cut(s)	594
BclI	TGATCA	3 cut(s)	133, 297, 952
BcnI	CCSGG	1 cut(s)	121
BcoDI	GTCTC	2 cut(s)	95, 435
BfaI	CTAG	3 cut(s)	180, 467, 732
BfmI	CTRYAG	1 cut(s)	505
BisI	GCNGC	2 cut(s)	736, 987
BlsI	GCNGC	2 cut(s)	737, 988
Bme1390I	CCNGG	2 cut(s)	121, 594
BmeT110I	CYCGRG	1 cut(s)	767
BmrFI	CCNGG	2 cut(s)	121, 594
BmsI	GCATC	5 cut(s)	247, 379, 478, 613, 763
BpiI	GAAGAC	1 cut(s)	805
BpuEI	CTTGAG	1 cut(s)	1033
BpuMI	CCSGG	1 cut(s)	121
Bsa29I	ATCGAT	1 cut(s)	1104
BsaAI	YACGTR	2 cut(s)	551, 757
BsaBI	GATNNNNATC	1 cut(s)	61
Bsc4I	CCNNNNNNNGG	1 cut(s)	163
Bse1I	ACTGG	2 cut(s)	514, 692
Bse3DI	GCAATG	1 cut(s)	955
Bse8I	GATNNNNATC	1 cut(s)	61
BseBI	CCWGG	1 cut(s)	594
BseCI	ATCGAT	1 cut(s)	1104
BseGI	GGATG	2 cut(s)	493, 778
BseJI	GATNNNNATC	1 cut(s)	61
BseLI	CCNNNNNNNGG	1 cut(s)	163
BseMI	GCAATG	1 cut(s)	955
BseMII	CTCAG	3 cut(s)	98, 534, 661
BseNI	ACTGG	2 cut(s)	514, 692
BseRI	GAGGAG	3 cut(s)	30, 33, 845
BseSI	GKGCMC	2 cut(s)	556, 804
BseXI	GCAGC	2 cut(s)	747, 973
Bsh1236I	CGCG	1 cut(s)	376
BshVI	ATCGAT	1 cut(s)	1104
BsiHKAI	GWGCWC	3 cut(s)	556, 962, 1042
BsiHKCI	CYCGRG	1 cut(s)	767
BsiSI	CCGG	1 cut(s)	121
BslFI	GGGAC	1 cut(s)	168
BslI	CCNNNNNNNGG	1 cut(s)	163
BsmAI	GTCTC	2 cut(s)	95, 435
BsmBI	CGTCTC	1 cut(s)	435
BsmFI	GGGAC	1 cut(s)	168
BsoBI	CYCGRG	1 cut(s)	767
Bsp1286I	GDGCHC	4 cut(s)	556, 804, 962, 1042
Bsp143I	GATC	4 cut(s)	133, 231, 297, 952
BspACI	CCGC	3 cut(s)	827, 1050, 1054
BspCNI	CTCAG	3 cut(s)	97, 535, 660
BspDI	ATCGAT	1 cut(s)	1104
BspFNI	CGCG	1 cut(s)	376
BspHI	TCATGA	1 cut(s)	915
BspMAI	CTGCAG	1 cut(s)	509
BspPI	GGATC	1 cut(s)	226
BspQI	GCTCTTC	1 cut(s)	162
BsrBI	CCGCTC	1 cut(s)	1050
BsrDI	GCAATG	1 cut(s)	955
BsrI	ACTGG	2 cut(s)	514, 692
BssMI	GATC	4 cut(s)	133, 231, 297, 952
BssSI	CACGAG	1 cut(s)	869
Bst2BI	CACGAG	1 cut(s)	869
Bst2UI	CCWGG	1 cut(s)	594
Bst4CI	ACNGT	2 cut(s)	143, 386
Bst6I	CTCTTC	3 cut(s)	162, 477, 699
BstBAI	YACGTR	2 cut(s)	551, 757
BstC8I	GCNNGC	2 cut(s)	374, 1052
BstDEI	CTNAG	3 cut(s)	84, 543, 647
BstF5I	GGATG	2 cut(s)	493, 778
BstFNI	CGCG	1 cut(s)	376
BstKTI	GATC	4 cut(s)	136, 234, 300, 955
BstMAI	GTCTC	2 cut(s)	95, 435
BstMBI	GATC	4 cut(s)	133, 231, 297, 952
BstMWI	GCNNNNNNNGC	1 cut(s)	560
BstNI	CCWGG	1 cut(s)	594
BstSCI	CCNGG	2 cut(s)	119, 592
BstSFI	CTRYAG	1 cut(s)	505
BstSLI	GKGCMC	2 cut(s)	556, 804
BstUI	CGCG	1 cut(s)	376
BstV1I	GCAGC	2 cut(s)	747, 973
BstV2I	GAAGAC	1 cut(s)	805
Bsu15I	ATCGAT	1 cut(s)	1104
BsuTUI	ATCGAT	1 cut(s)	1104
BtsCI	GGATG	2 cut(s)	493, 778
Cac8I	GCNNGC	2 cut(s)	374, 1052
CaiI	CAGNNNCTG	1 cut(s)	91
CciI	TCATGA	1 cut(s)	915
ClaI	ATCGAT	1 cut(s)	1104
Csp6I	GTAC	1 cut(s)	325
CviAII	CATG	3 cut(s)	534, 881, 916
CviQI	GTAC	1 cut(s)	325
DdeI	CTNAG	3 cut(s)	84, 543, 647
DpnI	GATC	4 cut(s)	135, 233, 299, 954
DpnII	GATC	4 cut(s)	133, 231, 297, 952
Eam1104I	CTCTTC	3 cut(s)	162, 477, 699
EarI	CTCTTC	3 cut(s)	162, 477, 699
EciI	GGCGGA	1 cut(s)	1069
Ecl136II	GAGCTC	1 cut(s)	1040
Eco24I	GRGCYC	1 cut(s)	1042
Eco32I	GATATC	1 cut(s)	502
Eco53kI	GAGCTC	1 cut(s)	1040
Eco57I	CTGAAG	2 cut(s)	369, 678
Eco72I	CACGTG	1 cut(s)	551
Eco88I	CYCGRG	1 cut(s)	767
EcoICRI	GAGCTC	1 cut(s)	1040
EcoRII	CCWGG	1 cut(s)	592
EcoRV	GATATC	1 cut(s)	502
EcoT22I	ATGCAT	1 cut(s)	528
EcoT38I	GRGCYC	1 cut(s)	1042
Esp3I	CGTCTC	1 cut(s)	435
FaeI	CATG	3 cut(s)	537, 884, 919
FaqI	GGGAC	1 cut(s)	168
FatI	CATG	3 cut(s)	533, 880, 915
FauI	CCCGC	1 cut(s)	1043
FbaI	TGATCA	3 cut(s)	133, 297, 952
Fnu4HI	GCNGC	2 cut(s)	736, 987
FokI	GGATG	2 cut(s)	500, 785
FriOI	GRGCYC	1 cut(s)	1042
Fsp4HI	GCNGC	2 cut(s)	736, 987
FspBI	CTAG	3 cut(s)	180, 467, 732
GluI	GCNGC	2 cut(s)	736, 987
HapII	CCGG	1 cut(s)	121
Hin1II	CATG	3 cut(s)	537, 884, 919
HinfI	GANTC	8 cut(s)	12, 20, 57, 80, 318, 475, 691, 1028
HpaII	CCGG	1 cut(s)	121
HphI	GGTGA	5 cut(s)	89, 302, 398, 713, 950
Hpy166II	GTNNAC	2 cut(s)	554, 685
Hpy188I	TCNGA	5 cut(s)	19, 611, 650, 957, 1033
Hpy8I	GTNNAC	2 cut(s)	554, 685
Hpy99I	CGWCG	1 cut(s)	561
HpyAV	CCTTC	8 cut(s)	36, 57, 68, 277, 344, 653, 915, 1038
HpyCH4III	ACNGT	2 cut(s)	143, 386
HpyCH4IV	ACGT	3 cut(s)	550, 756, 810
HpyCH4V	TGCA	5 cut(s)	392, 507, 526, 554, 989
HpyF10VI	GCNNNNNNNGC	1 cut(s)	560
HpyF3I	CTNAG	3 cut(s)	84, 543, 647
HpySE526I	ACGT	3 cut(s)	550, 756, 810
Hsp92II	CATG	3 cut(s)	537, 884, 919
Ksp22I	TGATCA	3 cut(s)	133, 297, 952
Kzo9I	GATC	4 cut(s)	133, 231, 297, 952
LguI	GCTCTTC	1 cut(s)	162
LmnI	GCTCC	3 cut(s)	43, 1037, 1047
Lsp1109I	GCAGC	2 cut(s)	747, 973
LweI	GCATC	5 cut(s)	247, 379, 478, 613, 763
MaeI	CTAG	3 cut(s)	180, 467, 732
MaeII	ACGT	3 cut(s)	550, 756, 810
MalI	GATC	4 cut(s)	135, 233, 299, 954
MbiI	CCGCTC	1 cut(s)	1050
MboI	GATC	4 cut(s)	133, 231, 297, 952
MfeI	CAATTG	1 cut(s)	211
MhlI	GDGCHC	4 cut(s)	556, 804, 962, 1042
MluCI	AATT	3 cut(s)	112, 211, 336
MluI	ACGCGT	1 cut(s)	374
MmeI	TCCRAC	1 cut(s)	313
Mph1103I	ATGCAT	1 cut(s)	528
MseI	TTAA	3 cut(s)	207, 219, 807
MspA1I	CMGCKG	1 cut(s)	971
MspI	CCGG	1 cut(s)	121
MspR9I	CCNGG	2 cut(s)	121, 594
MunI	CAATTG	1 cut(s)	211
MvaI	CCWGG	1 cut(s)	594
MvnI	CGCG	1 cut(s)	376
MwoI	GCNNNNNNNGC	1 cut(s)	560
NciI	CCSGG	1 cut(s)	121
NdeII	GATC	4 cut(s)	133, 231, 297, 952
NlaIII	CATG	3 cut(s)	537, 884, 919
NsiI	ATGCAT	1 cut(s)	528
PaeR7I	CTCGAG	1 cut(s)	767
PagI	TCATGA	1 cut(s)	915
PciSI	GCTCTTC	1 cut(s)	162
PcsI	WCGNNNNNNNCGW	1 cut(s)	556
PfeI	GAWTC	8 cut(s)	12, 20, 57, 80, 318, 475, 691, 1028
PflMI	CCANNNNNTGG	1 cut(s)	163
PfoI	TCCNGGA	1 cut(s)	592
PkrI	GCNGC	2 cut(s)	737, 988
PmaCI	CACGTG	1 cut(s)	551
PmlI	CACGTG	1 cut(s)	551
Ppu21I	YACGTR	2 cut(s)	551, 757
PsiI	TTATAA	2 cut(s)	381, 638
Psp124BI	GAGCTC	1 cut(s)	1042
Psp6I	CCWGG	1 cut(s)	592
PspCI	CACGTG	1 cut(s)	551
PspGI	CCWGG	1 cut(s)	592
PstI	CTGCAG	1 cut(s)	509
PstNI	CAGNNNCTG	1 cut(s)	91
PvuII	CAGCTG	1 cut(s)	971
RsaI	GTAC	1 cut(s)	326
RsaNI	GTAC	1 cut(s)	325
SacI	GAGCTC	1 cut(s)	1042
SapI	GCTCTTC	1 cut(s)	162
SaqAI	TTAA	3 cut(s)	207, 219, 807
SatI	GCNGC	2 cut(s)	736, 987
Sau3AI	GATC	4 cut(s)	133, 231, 297, 952
ScrFI	CCNGG	2 cut(s)	121, 594
SduI	GDGCHC	4 cut(s)	556, 804, 962, 1042
SfaNI	GCATC	5 cut(s)	247, 379, 478, 613, 763
SfcI	CTRYAG	1 cut(s)	505
Sfr274I	CTCGAG	1 cut(s)	767
SlaI	CTCGAG	1 cut(s)	767
SmlI	CTYRAG	2 cut(s)	767, 1012
SmoI	CTYRAG	2 cut(s)	767, 1012
Sse9I	AATT	3 cut(s)	112, 211, 336
SsiI	CCGC	3 cut(s)	827, 1050, 1054
SspMI	CTAG	3 cut(s)	180, 467, 732
SstI	GAGCTC	1 cut(s)	1042
StyD4I	CCNGG	2 cut(s)	119, 592
TaaI	ACNGT	2 cut(s)	143, 386
TaiI	ACGT	3 cut(s)	553, 759, 813
TaqI	TCGA	9 cut(s)	267, 356, 433, 750, 768, 909, 1042, 1082, 1104
TasI	AATT	3 cut(s)	112, 211, 336
TfiI	GAWTC	8 cut(s)	12, 20, 57, 80, 318, 475, 691, 1028
Tru1I	TTAA	3 cut(s)	207, 219, 807
Tru9I	TTAA	3 cut(s)	207, 219, 807
TseI	GCWGC	2 cut(s)	735, 986
TspDTI	ATGAA	6 cut(s)	17, 182, 752, 905, 990, 1088
TspGWI	ACGGA	1 cut(s)	417
Van91I	CCANNNNNTGG	1 cut(s)	163
VneI	GTGCAC	1 cut(s)	552
XapI	RAATTY	1 cut(s)	112
XhoI	CTCGAG	1 cut(s)	767
XspI	CTAG	3 cut(s)	180, 467, 732
Zsp2I	ATGCAT	1 cut(s)	528

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.