Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb3

Orthogroup ID

OG0004405

Physical Location & Seq

Genomic Coordinates Reverse (-)

14624998 .. 14630151

Gene Structure 5154 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_3g21511.t3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1113 bp

ATGAAACGAGGCTACTCGGAATCGTCCTCCACCTCCGTTGGGCCACCTCAATCGAGGTTCAAAGCCAACCCAGAAGATGATTCAAATTTCTTGGAGGATGAAAGCACAAAGATTTTTGCACGAAAAGTGGCCGATCATTATAGTGCAAGGACAAATCAAACTCTGGAAGAACGAGAAGCTAGCCCAATCATCCATCTAAAAAAGCTTAACAATTGGATTAAGAGCGTCTTAATTCAGCTCTATGCTCGCCGTGGAGATGCTGTTCTTGATCTTGCATGTGGCAAGGGAGGTGATCTCATCAAATGGGACAAGGCCAAAATTGGGTACTACGTTGGCATTGATATTGCTGAAGGATCGATAGAAGATTGTCGTACCCGTTACAATGGTGATGCCGATCATCATCAACGCCGTAAAAAGTTTACATTTCCTGCACGTCTTATCTGTGGAGACTGCTATGAGGTTCGACTGGATAAAGCCCTAGCAGATGATGCACCCTTTGATATTTGCAGTTGCCAGTTTGCCTTGCATTATTCCTGGTCCACTGAAGCACGTGCACGGAGAGCCCTGGCGAATGTTTCAGCTTTACTCCGCCCAGGCGGAACTTTCATTGGAACAATGCCAGACGCCAATGTGATCATCAAAAAGCTGAGAGAAGCTGAAGGATTGTTCTTTGGAAATAGTGTGTACTGGATACGATTTGATGAAGAATTTTCTGAAAAGAAATTCAAGTCTTCAAGCCCCTTTGGTATCAAGTACAAGTTTCACCTGGAGGATGCTGTTGATTGCCCTGAATGGATTGTCCCCTTTCATGTATTCAAATCATTGGTAGAAGAGTATGATATGGAGTTAATTTTTGCGAAGAACTCTCATGAATTCGTGCACGAGTACATGAAAAGGCCAGAGTATGTGGAATTAATGCGGAGGCTTGGTGCATTAGGTGATGGTAACCAAGATCAGAGTACACTATCACAAGACGAATGGGAAGTAGCCTATTTGTACATGTCATTTGTCTTAAGGAAGCGGGGCCAACCTGATCGCACTCAAGCAAATAGTAGAAGAGATAAAGGCAAGATGCATATATCAAAAGAGGACATATTGAACATTGAACATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001510 GO:0003674 GO:0003824 GO:0004482 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005845 GO:0006139 GO:0006370 GO:0006396 GO:0006397 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008168 GO:0008170 GO:0008173 GO:0008174 GO:0008757 GO:0009451 GO:0009452 GO:0009987 GO:0010467 GO:0016070 GO:0016071 GO:0016556 GO:0016740 GO:0016741 GO:0032259 GO:0032991 GO:0034518 GO:0034641 GO:0036260 GO:0036265 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043414 GO:0044237 GO:0044238 GO:0044260 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0080009 GO:0090304 GO:0106005 GO:0140098 GO:1901360

KEGG Pathways

Metabolic & Signaling

ko03015 map03015

Pfam Domains

Protein Families

Pox_MCEL

Protein Analysis

371

Amino Acids

42.61

Weight (kDa)

6.62

Isoelectric Point (pI)

53.77

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
mRNA_G-N7_MeTrfase	PF03291	32 - 341	9.8e-129	mRNA (guanine-N(7))-methyltransferase domain
Methyltransf_31	PF13847	84 - 208	1.1e-08	Methyltransferase domain
Methyltransf_25	PF13649	88 - 200	1.6e-10	Methyltransferase domain
Methyltransf_12	PF08242	89 - 202	9.2e-10	Methyltransferase domain
Methyltransf_11	PF08241	89 - 203	2.6e-09	Methyltransferase domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004405)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G20650 AT3G20650 AT3G20650
fragaria_vesca	FvH4_3g21511 FvH4_3g21511 FvH4_3g21511 FvH4_6g24821
malus_domestica	MD03G1215400.v1.1 MD11G1013800.v1.1 MD11G1230000.v1.1
prunus_persica	Prupe.4G197400_v2.0.a1
pyrus_communis	pycom03g16380 pycom11g20380
rosa_chinensis	RchiOBHm_Chr1g0332461 RchiOBHm_Chr5g0036961
rosa_laevigata	RLG00000019767 RLG00000029593 RLG00000029668 RLG00000033739
rosa_multiflora	Rmu_sc0000574.1_g000061 Rmu_sc0006147.1_g000007 Rmu_sc0007663.1_g000020 Rmu_sc0024051.1_g000002
rosa_roxburghii	Rroxscaffold_1G00043990 Rroxscaffold_2G00105880
rosa_rugosa	Rorug01G0101300 Rorug05G0159400
rosa_samantha	Rh1DG129900 Rh5DG261500
rosa_wichuraiana	Rw1G010160 Rw1G015570 Rw5G023160

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	4 cut(s)	589, 597, 919, 1021
AclWI	GGATC	1 cut(s)	361
AcoI	YGGCCR	1 cut(s)	129
AcsI	RAATTY	4 cut(s)	85, 707, 722, 872
AcuI	CTGAAG	3 cut(s)	369, 564, 678
AcvI	CACGTG	1 cut(s)	551
AcyI	GRCGYC	1 cut(s)	624
AfaI	GTAC	7 cut(s)	326, 373, 686, 755, 887, 961, 998
AfiI	CCNNNNNNNGG	2 cut(s)	39, 321
AflII	CTTAAG	1 cut(s)	1012
AflIII	ACRYGT	1 cut(s)	999
AgsI	TTSAA	7 cut(s)	61, 84, 727, 735, 817, 1099, 1106
AjiI	CACGTC	1 cut(s)	434
AjnI	CCWGG	4 cut(s)	533, 564, 592, 765
AloI	GAACNNNNNNTCC	2 cut(s)	246, 278
AluBI	AGCT	6 cut(s)	179, 205, 238, 581, 646, 656
AluI	AGCT	6 cut(s)	179, 205, 238, 581, 646, 656
Alw21I	GWGCWC	2 cut(s)	556, 882
Alw26I	GTCTC	1 cut(s)	441
Alw44I	GTGCAC	2 cut(s)	552, 878
AlwI	GGATC	1 cut(s)	361
AoxI	GGCC	5 cut(s)	41, 129, 312, 896, 1024
ApaLI	GTGCAC	2 cut(s)	552, 878
ApoI	RAATTY	4 cut(s)	85, 707, 722, 872
AseI	ATTAAT	1 cut(s)	914
AspS9I	GGNCC	3 cut(s)	41, 537, 1024
AsuHPI	GGTGA	4 cut(s)	302, 398, 755, 950
AsuNHI	GCTAGC	1 cut(s)	179
AvaII	GGWCC	1 cut(s)	537
BaeGI	GKGCMC	2 cut(s)	556, 882
BanII	GRGCYC	1 cut(s)	565
BauI	CACGAG	1 cut(s)	881
BbrPI	CACGTG	1 cut(s)	551
BbsI	GAAGAC	1 cut(s)	723
Bbv12I	GWGCWC	2 cut(s)	556, 882
BccI	CCATC	2 cut(s)	201, 935
BceAI	ACGGC	2 cut(s)	234, 393
BciT130I	CCWGG	4 cut(s)	535, 566, 594, 767
BciVI	GTATCC	1 cut(s)	684
BclI	TGATCA	1 cut(s)	633
BcoDI	GTCTC	1 cut(s)	441
BfaI	CTAG	2 cut(s)	180, 479
BfrI	CTTAAG	1 cut(s)	1012
BfuI	GTATCC	1 cut(s)	684
Bme1390I	CCNGG	4 cut(s)	535, 566, 594, 767
Bme18I	GGWCC	1 cut(s)	537
BmgBI	CACGTC	1 cut(s)	434
BmgT120I	GGNCC	3 cut(s)	41, 537, 1024
BmiI	GGNNCC	1 cut(s)	1025
BmrFI	CCNGG	4 cut(s)	535, 566, 594, 767
BmsI	GCATC	5 cut(s)	247, 379, 478, 763, 1062
BmtI	GCTAGC	1 cut(s)	183
BpiI	GAAGAC	1 cut(s)	723
BplI	GAGNNNNNCTC	2 cut(s)	279, 311
BpmI	CTGGAG	1 cut(s)	788
BpuEI	CTTGAG	1 cut(s)	1026
Bsa29I	ATCGAT	1 cut(s)	356
BsaAI	YACGTR	1 cut(s)	551
BsaBI	GATNNNNATC	2 cut(s)	393, 399
BsaHI	GRCGYC	1 cut(s)	624
BsaJI	CCNNGG	3 cut(s)	250, 564, 592
BsaXI	ACNNNNNCTCC	4 cut(s)	246, 276, 913, 943
Bsc4I	CCNNNNNNNGG	2 cut(s)	39, 321
Bse1I	ACTGG	3 cut(s)	471, 514, 692
Bse8I	GATNNNNATC	2 cut(s)	393, 399
BseBI	CCWGG	4 cut(s)	535, 566, 594, 767
BseCI	ATCGAT	1 cut(s)	356
BseDI	CCNNGG	3 cut(s)	250, 564, 592
BseGI	GGATG	3 cut(s)	103, 189, 778
BseJI	GATNNNNATC	2 cut(s)	393, 399
BseLI	CCNNNNNNNGG	2 cut(s)	39, 321
BseMII	CTCAG	1 cut(s)	638
BseNI	ACTGG	3 cut(s)	471, 514, 692
BseSI	GKGCMC	2 cut(s)	556, 882
BsgI	GTGCAG	1 cut(s)	414
BshFI	GGCC	5 cut(s)	43, 131, 314, 898, 1026
BshVI	ATCGAT	1 cut(s)	356
BsiHKAI	GWGCWC	2 cut(s)	556, 882
BslFI	GGGAC	2 cut(s)	320, 785
BslI	CCNNNNNNNGG	2 cut(s)	39, 321
BsmAI	GTCTC	1 cut(s)	441
BsmFI	GGGAC	2 cut(s)	320, 785
BsnI	GGCC	5 cut(s)	43, 131, 314, 898, 1026
Bsp1286I	GDGCHC	3 cut(s)	556, 565, 882
Bsp1407I	TGTACA	1 cut(s)	996
Bsp143I	GATC	8 cut(s)	133, 268, 292, 353, 394, 633, 952, 1033
BspACI	CCGC	4 cut(s)	589, 597, 919, 1021
BspANI	GGCC	5 cut(s)	43, 131, 314, 898, 1026
BspCNI	CTCAG	1 cut(s)	639
BspDI	ATCGAT	1 cut(s)	356
BspHI	TCATGA	1 cut(s)	868
BspLI	GGNNCC	1 cut(s)	1025
BspOI	GCTAGC	1 cut(s)	183
BspPI	GGATC	1 cut(s)	361
BspTI	CTTAAG	1 cut(s)	1012
BsrGI	TGTACA	1 cut(s)	996
BsrI	ACTGG	3 cut(s)	471, 514, 692
BssECI	CCNNGG	3 cut(s)	250, 564, 592
BssMI	GATC	8 cut(s)	133, 268, 292, 353, 394, 633, 952, 1033
BssNI	GRCGYC	1 cut(s)	624
BssSI	CACGAG	1 cut(s)	881
Bst2BI	CACGAG	1 cut(s)	881
Bst2UI	CCWGG	4 cut(s)	535, 566, 594, 767
Bst6I	CTCTTC	2 cut(s)	825, 1051
BstACI	GRCGYC	1 cut(s)	624
BstAFI	CTTAAG	1 cut(s)	1012
BstAPI	GCANNNNNTGC	1 cut(s)	488
BstAUI	TGTACA	1 cut(s)	996
BstBAI	YACGTR	1 cut(s)	551
BstC8I	GCNNGC	2 cut(s)	181, 247
BstDEI	CTNAG	1 cut(s)	647
BstDSI	CCRYGG	1 cut(s)	250
BstEII	GGTNACC	1 cut(s)	944
BstF5I	GGATG	3 cut(s)	103, 189, 778
BstKTI	GATC	8 cut(s)	136, 271, 295, 356, 397, 636, 955, 1036
BstMAI	GTCTC	1 cut(s)	441
BstMBI	GATC	8 cut(s)	133, 268, 292, 353, 394, 633, 952, 1033
BstMWI	GCNNNNNNNGC	2 cut(s)	488, 560
BstNI	CCWGG	4 cut(s)	535, 566, 594, 767
BstNSI	RCATGY	2 cut(s)	279, 1003
BstPI	GGTNACC	1 cut(s)	944
BstSCI	CCNGG	4 cut(s)	533, 564, 592, 765
BstSLI	GKGCMC	2 cut(s)	556, 882
BstV2I	GAAGAC	1 cut(s)	723
Bsu15I	ATCGAT	1 cut(s)	356
BsuI	GTATCC	1 cut(s)	684
BsuRI	GGCC	5 cut(s)	43, 131, 314, 898, 1026
BsuTUI	ATCGAT	1 cut(s)	356
BtgI	CCRYGG	1 cut(s)	250
BtrI	CACGTC	1 cut(s)	434
BtsCI	GGATG	3 cut(s)	103, 189, 778
BtsIMutI	CAGTG	1 cut(s)	540
Cac8I	GCNNGC	2 cut(s)	181, 247
CciI	TCATGA	1 cut(s)	868
Cfr13I	GGNCC	3 cut(s)	41, 537, 1024
ClaI	ATCGAT	1 cut(s)	356
CseI	GACGC	2 cut(s)	214, 632
Csp6I	GTAC	7 cut(s)	325, 372, 685, 754, 886, 960, 997
CspCI	CAANNNNNGTGG	2 cut(s)	19, 54
CviAII	CATG	5 cut(s)	276, 809, 869, 889, 1000
CviQI	GTAC	7 cut(s)	325, 372, 685, 754, 886, 960, 997
DdeI	CTNAG	1 cut(s)	647
DpnI	GATC	8 cut(s)	135, 270, 294, 355, 396, 635, 954, 1035
DpnII	GATC	8 cut(s)	133, 268, 292, 353, 394, 633, 952, 1033
EaeI	YGGCCR	1 cut(s)	129
Eam1104I	CTCTTC	2 cut(s)	825, 1051
EarI	CTCTTC	2 cut(s)	825, 1051
EciI	GGCGGA	2 cut(s)	578, 612
Eco24I	GRGCYC	1 cut(s)	565
Eco47I	GGWCC	1 cut(s)	537
Eco57I	CTGAAG	3 cut(s)	369, 564, 678
Eco72I	CACGTG	1 cut(s)	551
Eco91I	GGTNACC	1 cut(s)	944
EcoO65I	GGTNACC	1 cut(s)	944
EcoRI	GAATTC	1 cut(s)	872
EcoRII	CCWGG	4 cut(s)	533, 564, 592, 765
EcoT22I	ATGCAT	1 cut(s)	1077
EcoT38I	GRGCYC	1 cut(s)	565
FaeI	CATG	5 cut(s)	279, 812, 872, 892, 1003
FalI	AAGNNNNNCTT	2 cut(s)	212, 244
FaqI	GGGAC	2 cut(s)	320, 785
FatI	CATG	5 cut(s)	275, 808, 868, 888, 999
FauI	CCCGC	1 cut(s)	1014
FbaI	TGATCA	1 cut(s)	633
FokI	GGATG	3 cut(s)	110, 176, 785
FriOI	GRGCYC	1 cut(s)	565
FspBI	CTAG	2 cut(s)	180, 479
GsuI	CTGGAG	1 cut(s)	788
HaeIII	GGCC	5 cut(s)	43, 131, 314, 898, 1026
HgaI	GACGC	2 cut(s)	214, 632
Hin1I	GRCGYC	1 cut(s)	624
Hin1II	CATG	5 cut(s)	279, 812, 872, 892, 1003
HindIII	AAGCTT	1 cut(s)	203
HinfI	GANTC	2 cut(s)	20, 80
HphI	GGTGA	4 cut(s)	302, 398, 755, 950
Hpy166II	GTNNAC	6 cut(s)	420, 540, 554, 685, 880, 962
Hpy188I	TCNGA	3 cut(s)	19, 715, 957
Hpy188III	TCNNGA	3 cut(s)	164, 266, 869
Hpy8I	GTNNAC	6 cut(s)	420, 540, 554, 685, 880, 962
HpyAV	CCTTC	2 cut(s)	344, 653
HpyCH4IV	ACGT	3 cut(s)	330, 433, 550
HpyF10VI	GCNNNNNNNGC	2 cut(s)	488, 560
HpyF3I	CTNAG	1 cut(s)	647
HpySE526I	ACGT	3 cut(s)	330, 433, 550
Hsp92I	GRCGYC	1 cut(s)	624
Hsp92II	CATG	5 cut(s)	279, 812, 872, 892, 1003
Ksp22I	TGATCA	1 cut(s)	633
Kzo9I	GATC	8 cut(s)	133, 268, 292, 353, 394, 633, 952, 1033
LweI	GCATC	5 cut(s)	247, 379, 478, 763, 1062
MaeI	CTAG	2 cut(s)	180, 479
MaeII	ACGT	3 cut(s)	330, 433, 550
MaeIII	GTNAC	2 cut(s)	377, 944
MalI	GATC	8 cut(s)	135, 270, 294, 355, 396, 635, 954, 1035
MboI	GATC	8 cut(s)	133, 268, 292, 353, 394, 633, 952, 1033
MboII	GAAGA	8 cut(s)	86, 179, 374, 716, 723, 842, 871, 1068
MfeI	CAATTG	1 cut(s)	211
MhlI	GDGCHC	3 cut(s)	556, 565, 882
MluCI	AATT	9 cut(s)	85, 211, 231, 318, 707, 722, 849, 872, 911
Mph1103I	ATGCAT	1 cut(s)	1077
MseI	TTAA	6 cut(s)	207, 219, 230, 848, 914, 1013
MslI	CAYNNNNRTG	1 cut(s)	141
MspCI	CTTAAG	1 cut(s)	1012
MspR9I	CCNGG	4 cut(s)	535, 566, 594, 767
MunI	CAATTG	1 cut(s)	211
MvaI	CCWGG	4 cut(s)	535, 566, 594, 767
MwoI	GCNNNNNNNGC	2 cut(s)	488, 560
NdeII	GATC	8 cut(s)	133, 268, 292, 353, 394, 633, 952, 1033
NheI	GCTAGC	1 cut(s)	179
NlaIII	CATG	5 cut(s)	279, 812, 872, 892, 1003
NlaIV	GGNNCC	1 cut(s)	1025
NsiI	ATGCAT	1 cut(s)	1077
NspI	RCATGY	2 cut(s)	279, 1003
PagI	TCATGA	1 cut(s)	868
PciI	ACATGT	1 cut(s)	999
PfeI	GAWTC	2 cut(s)	20, 80
PmaCI	CACGTG	1 cut(s)	551
PmlI	CACGTG	1 cut(s)	551
Ppu21I	YACGTR	1 cut(s)	551
PscI	ACATGT	1 cut(s)	999
PshBI	ATTAAT	1 cut(s)	914
Psp6I	CCWGG	4 cut(s)	533, 564, 592, 765
PspCI	CACGTG	1 cut(s)	551
PspEI	GGTNACC	1 cut(s)	944
PspGI	CCWGG	4 cut(s)	533, 564, 592, 765
PspN4I	GGNNCC	1 cut(s)	1025
PspPI	GGNCC	3 cut(s)	41, 537, 1024
RsaI	GTAC	7 cut(s)	326, 373, 686, 755, 887, 961, 998
RsaNI	GTAC	7 cut(s)	325, 372, 685, 754, 886, 960, 997
RseI	CAYNNNNRTG	1 cut(s)	141
SaqAI	TTAA	6 cut(s)	207, 219, 230, 848, 914, 1013
Sau3AI	GATC	8 cut(s)	133, 268, 292, 353, 394, 633, 952, 1033
Sau96I	GGNCC	3 cut(s)	41, 537, 1024
ScrFI	CCNGG	4 cut(s)	535, 566, 594, 767
SduI	GDGCHC	3 cut(s)	556, 565, 882
SfaNI	GCATC	5 cut(s)	247, 379, 478, 763, 1062
SinI	GGWCC	1 cut(s)	537
SmiMI	CAYNNNNRTG	1 cut(s)	141
SmlI	CTYRAG	2 cut(s)	1012, 1041
SmoI	CTYRAG	2 cut(s)	1012, 1041
Sse9I	AATT	9 cut(s)	85, 211, 231, 318, 707, 722, 849, 872, 911
SsiI	CCGC	4 cut(s)	589, 597, 919, 1021
SspMI	CTAG	2 cut(s)	180, 479
StyD4I	CCNGG	4 cut(s)	533, 564, 592, 765
TaiI	ACGT	3 cut(s)	333, 436, 553
TaqI	TCGA	3 cut(s)	53, 356, 463
TasI	AATT	9 cut(s)	85, 211, 231, 318, 707, 722, 849, 872, 911
TatI	WGTACW	5 cut(s)	684, 753, 885, 959, 996
TfiI	GAWTC	2 cut(s)	20, 80
Tru1I	TTAA	6 cut(s)	207, 219, 230, 848, 914, 1013
Tru9I	TTAA	6 cut(s)	207, 219, 230, 848, 914, 1013
TscAI	CASTG	1 cut(s)	547
TspDTI	ATGAA	7 cut(s)	17, 114, 595, 717, 797, 885, 905
TspGWI	ACGGA	2 cut(s)	25, 571
TspRI	CASTG	1 cut(s)	547
Vha464I	CTTAAG	1 cut(s)	1012
VneI	GTGCAC	2 cut(s)	552, 878
VpaK11BI	GGWCC	1 cut(s)	537
VspI	ATTAAT	1 cut(s)	914
XapI	RAATTY	4 cut(s)	85, 707, 722, 872
XceI	RCATGY	2 cut(s)	279, 1003
XspI	CTAG	2 cut(s)	180, 479
Zsp2I	ATGCAT	1 cut(s)	1077

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.