Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr1

Orthogroup ID

OG0004405

Physical Location & Seq

Genomic Coordinates Reverse (-)

34711486 .. 34713365

Gene Structure 1880 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw1G015570.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 267 bp

ATGGAGTTAATTTTTGTGAAGAACTCTCATGAATTTGTGCACGAGTATATGAAAAGACCAGAGTACGTCGAGTTAATGCGGAGGCTTGGTGCATTAGGTGACGGTAACCAAGATCAGAGTACACTATCACAAGATGAATGGGAAGTAGCCTATTTGTACTTGTCATTTGTCTTGAGGAAGAGACATCACGCCAGGAGACAACAGAAATTTTATGAATCAGACGACAGATTATATCTGTCGTCTGATGGCTTTGGTGACATAGTGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001510 GO:0003674 GO:0003824 GO:0004482 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005845 GO:0006139 GO:0006370 GO:0006396 GO:0006397 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008168 GO:0008170 GO:0008173 GO:0008174 GO:0008757 GO:0009451 GO:0009452 GO:0009987 GO:0010467 GO:0016070 GO:0016071 GO:0016556 GO:0016740 GO:0016741 GO:0032259 GO:0032991 GO:0034518 GO:0034641 GO:0036260 GO:0036265 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043414 GO:0044237 GO:0044238 GO:0044260 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0080009 GO:0090304 GO:0106005 GO:0140098 GO:1901360

KEGG Pathways

Metabolic & Signaling

ko03015 map03015

Pfam Domains

Protein Families

Pox_MCEL

Protein Analysis

88

Amino Acids

10.59

Weight (kDa)

5.75

Isoelectric Point (pI)

59.51

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
mRNA_G-N7_MeTrfase	PF03291	1 - 61	1.7e-14	mRNA (guanine-N(7))-methyltransferase domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004405)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G20650 AT3G20650 AT3G20650
fragaria_vesca	FvH4_3g21511 FvH4_3g21511 FvH4_3g21511 FvH4_6g24821
malus_domestica	MD03G1215400.v1.1 MD11G1013800.v1.1 MD11G1230000.v1.1
prunus_persica	Prupe.4G197400_v2.0.a1
pyrus_communis	pycom03g16380 pycom11g20380
rosa_chinensis	RchiOBHm_Chr1g0332461 RchiOBHm_Chr5g0036961
rosa_laevigata	RLG00000019767 RLG00000029593 RLG00000029668 RLG00000033739
rosa_multiflora	Rmu_sc0000574.1_g000061 Rmu_sc0006147.1_g000007 Rmu_sc0007663.1_g000020 Rmu_sc0024051.1_g000002
rosa_roxburghii	Rroxscaffold_1G00043990 Rroxscaffold_2G00105880
rosa_rugosa	Rorug01G0101300 Rorug05G0159400
rosa_samantha	Rh1DG129900 Rh5DG261500
rosa_wichuraiana	Rw1G010160 Rw1G015570 Rw5G023160

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	79
AcsI	RAATTY	2 cut(s)	32, 206
AfaI	GTAC	3 cut(s)	65, 121, 158
AjnI	CCWGG	1 cut(s)	191
Alw21I	GWGCWC	1 cut(s)	42
Alw26I	GTCTC	2 cut(s)	175, 190
Alw44I	GTGCAC	1 cut(s)	38
ApaLI	GTGCAC	1 cut(s)	38
ApoI	RAATTY	2 cut(s)	32, 206
AsuHPI	GGTGA	2 cut(s)	110, 266
BaeGI	GKGCMC	1 cut(s)	42
BauI	CACGAG	1 cut(s)	41
Bbv12I	GWGCWC	1 cut(s)	42
BccI	CCATC	1 cut(s)	239
BciT130I	CCWGG	1 cut(s)	193
BcoDI	GTCTC	2 cut(s)	175, 190
Bme1390I	CCNGG	1 cut(s)	193
BmrFI	CCNGG	1 cut(s)	193
BpuEI	CTTGAG	1 cut(s)	193
BsaXI	ACNNNNNCTCC	2 cut(s)	73, 103
BseBI	CCWGG	1 cut(s)	193
BseSI	GKGCMC	1 cut(s)	42
BsiHKAI	GWGCWC	1 cut(s)	42
BsmAI	GTCTC	2 cut(s)	175, 190
Bsp1286I	GDGCHC	1 cut(s)	42
Bsp143I	GATC	1 cut(s)	112
BspACI	CCGC	1 cut(s)	79
BspHI	TCATGA	1 cut(s)	28
BssMI	GATC	1 cut(s)	112
BssSI	CACGAG	1 cut(s)	41
Bst2BI	CACGAG	1 cut(s)	41
Bst2UI	CCWGG	1 cut(s)	193
Bst4CI	ACNGT	1 cut(s)	104
Bst6I	CTCTTC	1 cut(s)	173
BstEII	GGTNACC	1 cut(s)	104
BstKTI	GATC	1 cut(s)	115
BstMAI	GTCTC	2 cut(s)	175, 190
BstMBI	GATC	1 cut(s)	112
BstNI	CCWGG	1 cut(s)	193
BstPI	GGTNACC	1 cut(s)	104
BstSCI	CCNGG	1 cut(s)	191
BstSLI	GKGCMC	1 cut(s)	42
CciI	TCATGA	1 cut(s)	28
Csp6I	GTAC	3 cut(s)	64, 120, 157
CviAII	CATG	1 cut(s)	29
CviJI	RGCY	3 cut(s)	85, 149, 249
CviKI_1	RGCY	3 cut(s)	85, 149, 249
CviQI	GTAC	3 cut(s)	64, 120, 157
DpnI	GATC	1 cut(s)	114
DpnII	GATC	1 cut(s)	112
Eam1104I	CTCTTC	1 cut(s)	173
EarI	CTCTTC	1 cut(s)	173
Eco91I	GGTNACC	1 cut(s)	104
EcoO65I	GGTNACC	1 cut(s)	104
EcoRII	CCWGG	1 cut(s)	191
FaeI	CATG	1 cut(s)	32
FaiI	YATR	6 cut(s)	30, 48, 50, 213, 232, 260
FatI	CATG	1 cut(s)	28
Hin1II	CATG	1 cut(s)	32
HinfI	GANTC	1 cut(s)	215
HphI	GGTGA	2 cut(s)	110, 266
Hpy166II	GTNNAC	2 cut(s)	40, 122
Hpy188I	TCNGA	3 cut(s)	117, 220, 244
Hpy188III	TCNNGA	2 cut(s)	29, 172
Hpy8I	GTNNAC	2 cut(s)	40, 122
Hpy99I	CGWCG	1 cut(s)	71
HpyCH4III	ACNGT	1 cut(s)	104
HpyCH4IV	ACGT	1 cut(s)	66
HpyCH4V	TGCA	2 cut(s)	40, 92
HpySE526I	ACGT	1 cut(s)	66
Hsp92II	CATG	1 cut(s)	32
Kzo9I	GATC	1 cut(s)	112
LpnPI	CCDG	3 cut(s)	72, 178, 205
MaeII	ACGT	1 cut(s)	66
MaeIII	GTNAC	3 cut(s)	98, 104, 254
MalI	GATC	1 cut(s)	114
MboI	GATC	1 cut(s)	112
MboII	GAAGA	2 cut(s)	31, 190
MhlI	GDGCHC	1 cut(s)	42
MluCI	AATT	3 cut(s)	9, 32, 206
MnlI	CCTC	2 cut(s)	75, 168
MseI	TTAA	2 cut(s)	8, 74
MspR9I	CCNGG	1 cut(s)	193
MvaI	CCWGG	1 cut(s)	193
NdeII	GATC	1 cut(s)	112
NlaIII	CATG	1 cut(s)	32
NmuCI	GTSAC	2 cut(s)	98, 254
PagI	TCATGA	1 cut(s)	28
PfeI	GAWTC	1 cut(s)	215
Psp6I	CCWGG	1 cut(s)	191
PspEI	GGTNACC	1 cut(s)	104
PspGI	CCWGG	1 cut(s)	191
RsaI	GTAC	3 cut(s)	65, 121, 158
RsaNI	GTAC	3 cut(s)	64, 120, 157
SaqAI	TTAA	2 cut(s)	8, 74
Sau3AI	GATC	1 cut(s)	112
ScrFI	CCNGG	1 cut(s)	193
SduI	GDGCHC	1 cut(s)	42
SetI	ASST	2 cut(s)	69, 100
SmlI	CTYRAG	1 cut(s)	172
SmoI	CTYRAG	1 cut(s)	172
Sse9I	AATT	3 cut(s)	9, 32, 206
SsiI	CCGC	1 cut(s)	79
StyD4I	CCNGG	1 cut(s)	191
TaaI	ACNGT	1 cut(s)	104
TaiI	ACGT	1 cut(s)	69
TaqI	TCGA	1 cut(s)	69
TasI	AATT	3 cut(s)	9, 32, 206
TatI	WGTACW	2 cut(s)	119, 156
TfiI	GAWTC	1 cut(s)	215
Tru1I	TTAA	2 cut(s)	8, 74
Tru9I	TTAA	2 cut(s)	8, 74
TseFI	GTSAC	2 cut(s)	98, 254
Tsp45I	GTSAC	2 cut(s)	98, 254
TspDTI	ATGAA	4 cut(s)	45, 65, 150, 228
VneI	GTGCAC	1 cut(s)	38
XapI	RAATTY	2 cut(s)	32, 206

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.