Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr11

Orthogroup ID

OG0004405

Physical Location & Seq

Genomic Coordinates Forward (+)

1087600 .. 1087803

Gene Structure 204 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD11G1013800.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 204 bp

ATGGATACGTTTCGACGTAGATTTTTTCTGAAAAGAAAGTGTTCAAGCCCCTTTGGTATAGAGTGTAAGTTTCACCTGGAAGATGTTGTTGATTGCCCCGAATGGATTGTTCCCTTTCATGTTTTCAAATCATTGATAGCAGAGTACGATATGGAGCTAGTTTTCTGTAAGAACTCCCATGAATTCGTGCACACGAGTATATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001510 GO:0003674 GO:0003824 GO:0004482 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005845 GO:0006139 GO:0006370 GO:0006396 GO:0006397 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008168 GO:0008170 GO:0008173 GO:0008174 GO:0008757 GO:0009451 GO:0009452 GO:0009987 GO:0010467 GO:0016070 GO:0016071 GO:0016556 GO:0016740 GO:0016741 GO:0032259 GO:0032991 GO:0034518 GO:0034641 GO:0036260 GO:0036265 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043414 GO:0044237 GO:0044238 GO:0044260 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0080009 GO:0090304 GO:0106005 GO:0140098 GO:1901360

KEGG Pathways

Metabolic & Signaling

ko03015 map03015

Pfam Domains

Protein Families

Pox_MCEL

Protein Analysis

68

Amino Acids

8.09

Weight (kDa)

6.39

Isoelectric Point (pI)

62.81

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
mRNA_G-N7_MeTrfase	PF03291	12 - 66	2.7e-18	mRNA (guanine-N(7))-methyltransferase domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

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Orthologous Genes (Group: OG0004405)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G20650 AT3G20650 AT3G20650
fragaria_vesca	FvH4_3g21511 FvH4_3g21511 FvH4_3g21511 FvH4_6g24821
malus_domestica	MD03G1215400.v1.1 MD11G1013800.v1.1 MD11G1230000.v1.1
prunus_persica	Prupe.4G197400_v2.0.a1
pyrus_communis	pycom03g16380 pycom11g20380
rosa_chinensis	RchiOBHm_Chr1g0332461 RchiOBHm_Chr5g0036961
rosa_laevigata	RLG00000019767 RLG00000029593 RLG00000029668 RLG00000033739
rosa_multiflora	Rmu_sc0000574.1_g000061 Rmu_sc0006147.1_g000007 Rmu_sc0007663.1_g000020 Rmu_sc0024051.1_g000002
rosa_roxburghii	Rroxscaffold_1G00043990 Rroxscaffold_2G00105880
rosa_rugosa	Rorug01G0101300 Rorug05G0159400
rosa_samantha	Rh1DG129900 Rh5DG261500
rosa_wichuraiana	Rw1G010160 Rw1G015570 Rw5G023160

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcsI	RAATTY	1 cut(s)	182
AfaI	GTAC	1 cut(s)	146
AgsI	TTSAA	2 cut(s)	45, 127
AjnI	CCWGG	1 cut(s)	75
AluBI	AGCT	1 cut(s)	157
AluI	AGCT	1 cut(s)	157
Alw21I	GWGCWC	1 cut(s)	192
Alw44I	GTGCAC	1 cut(s)	188
ApaLI	GTGCAC	1 cut(s)	188
ApoI	RAATTY	1 cut(s)	182
Asp700I	GAANNNNTTC	1 cut(s)	40
AsuHPI	GGTGA	1 cut(s)	65
BaeGI	GKGCMC	1 cut(s)	192
BauI	CACGAG	1 cut(s)	193
Bbv12I	GWGCWC	1 cut(s)	192
BciT130I	CCWGG	1 cut(s)	77
BfaI	CTAG	1 cut(s)	158
Bme1390I	CCNGG	1 cut(s)	77
BmrFI	CCNGG	1 cut(s)	77
BseBI	CCWGG	1 cut(s)	77
BseSI	GKGCMC	1 cut(s)	192
BsiHKAI	GWGCWC	1 cut(s)	192
Bsp1286I	GDGCHC	1 cut(s)	192
BssSI	CACGAG	1 cut(s)	193
Bst2BI	CACGAG	1 cut(s)	193
Bst2UI	CCWGG	1 cut(s)	77
BstNI	CCWGG	1 cut(s)	77
BstSCI	CCNGG	1 cut(s)	75
BstSLI	GKGCMC	1 cut(s)	192
Csp6I	GTAC	1 cut(s)	145
CviAII	CATG	2 cut(s)	119, 179
CviJI	RGCY	2 cut(s)	48, 157
CviKI_1	RGCY	2 cut(s)	48, 157
CviQI	GTAC	1 cut(s)	145
EcoRI	GAATTC	1 cut(s)	182
EcoRII	CCWGG	1 cut(s)	75
FaeI	CATG	2 cut(s)	122, 182
FaiI	YATR	6 cut(s)	59, 120, 152, 180, 200, 202
FatI	CATG	2 cut(s)	118, 178
FspBI	CTAG	1 cut(s)	158
Hin1II	CATG	2 cut(s)	122, 182
HphI	GGTGA	1 cut(s)	65
Hpy166II	GTNNAC	1 cut(s)	190
Hpy188I	TCNGA	1 cut(s)	30
Hpy8I	GTNNAC	1 cut(s)	190
Hpy99I	CGWCG	1 cut(s)	18
HpyCH4IV	ACGT	2 cut(s)	8, 16
HpyCH4V	TGCA	1 cut(s)	190
HpySE526I	ACGT	2 cut(s)	8, 16
Hsp92II	CATG	2 cut(s)	122, 182
LmnI	GCTCC	1 cut(s)	154
LpnPI	CCDG	2 cut(s)	62, 89
MaeI	CTAG	1 cut(s)	158
MaeII	ACGT	2 cut(s)	8, 16
MboII	GAAGA	1 cut(s)	92
MhlI	GDGCHC	1 cut(s)	192
MluCI	AATT	1 cut(s)	182
MroXI	GAANNNNTTC	1 cut(s)	40
MspR9I	CCNGG	1 cut(s)	77
MvaI	CCWGG	1 cut(s)	77
NlaIII	CATG	2 cut(s)	122, 182
PdmI	GAANNNNTTC	1 cut(s)	40
Psp6I	CCWGG	1 cut(s)	75
PspGI	CCWGG	1 cut(s)	75
RsaI	GTAC	1 cut(s)	146
RsaNI	GTAC	1 cut(s)	145
ScrFI	CCNGG	1 cut(s)	77
SduI	GDGCHC	1 cut(s)	192
SetI	ASST	4 cut(s)	11, 19, 78, 159
SgeI	CNNG	8 cut(s)	57, 88, 89, 110, 131, 170, 191, 199
Sse9I	AATT	1 cut(s)	182
SspMI	CTAG	1 cut(s)	158
StyD4I	CCNGG	1 cut(s)	75
TaiI	ACGT	2 cut(s)	11, 19
TaqI	TCGA	1 cut(s)	13
TasI	AATT	1 cut(s)	182
TspDTI	ATGAA	2 cut(s)	107, 195
VneI	GTGCAC	1 cut(s)	188
XapI	RAATTY	1 cut(s)	182
XmnI	GAANNNNTTC	1 cut(s)	40
XspI	CTAG	1 cut(s)	158

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.