Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000574.1

Orthogroup ID

OG0004405

Physical Location & Seq

Genomic Coordinates Forward (+)

227650 .. 230248

Gene Structure 2599 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000574.1_g000061.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 393 bp

atgcttcgtgttggtgttacaattgagaatatttcatcgaaatttaagtcttcaagcccctttggtatcaagtacaagtttcatctggaggatgctgttgattgccctgaatggatcgtcccctttcatgtattcaaatcattggtagaagagtatgatatggagttaatttttgtgaagaactctcatgaatttgtgcacgagtatatgaaaagaccagagtacgtcgagttaatgcggaggcttggtgcattaggtgacggtaaccaagatcagagtacactatcacaagatgaatgggaagtagcctatttgtacttgtcatttgtcttgaggaaggtgtggtactttcatatggcattgctggtagaagagaaaggggagcaagggtag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001510 GO:0003674 GO:0003824 GO:0004482 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005845 GO:0006139 GO:0006370 GO:0006396 GO:0006397 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008168 GO:0008170 GO:0008173 GO:0008174 GO:0008757 GO:0009451 GO:0009452 GO:0009987 GO:0010467 GO:0016070 GO:0016071 GO:0016556 GO:0016740 GO:0016741 GO:0032259 GO:0032991 GO:0034518 GO:0034641 GO:0036260 GO:0036265 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043414 GO:0044237 GO:0044238 GO:0044260 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0080009 GO:0090304 GO:0106005 GO:0140098 GO:1901360

KEGG Pathways

Metabolic & Signaling

ko03015 map03015

Pfam Domains

Protein Families

Pox_MCEL

Protein Analysis

130

Amino Acids

15.38

Weight (kDa)

5.19

Isoelectric Point (pI)

52.8

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004405)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G20650 AT3G20650 AT3G20650
fragaria_vesca	FvH4_3g21511 FvH4_3g21511 FvH4_3g21511 FvH4_6g24821
malus_domestica	MD03G1215400.v1.1 MD11G1013800.v1.1 MD11G1230000.v1.1
prunus_persica	Prupe.4G197400_v2.0.a1
pyrus_communis	pycom03g16380 pycom11g20380
rosa_chinensis	RchiOBHm_Chr1g0332461 RchiOBHm_Chr5g0036961
rosa_laevigata	RLG00000019767 RLG00000029593 RLG00000029668 RLG00000033739
rosa_multiflora	Rmu_sc0000574.1_g000061 Rmu_sc0006147.1_g000007 Rmu_sc0007663.1_g000020 Rmu_sc0024051.1_g000002
rosa_roxburghii	Rroxscaffold_1G00043990 Rroxscaffold_2G00105880
rosa_rugosa	Rorug01G0101300 Rorug05G0159400
rosa_samantha	Rh1DG129900 Rh5DG261500
rosa_wichuraiana	Rw1G010160 Rw1G015570 Rw5G023160

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	238
AclWI	GGATC	1 cut(s)	122
AcsI	RAATTY	2 cut(s)	41, 191
AfaI	GTAC	5 cut(s)	74, 224, 280, 317, 347
AgsI	TTSAA	2 cut(s)	54, 136
Alw21I	GWGCWC	1 cut(s)	201
Alw44I	GTGCAC	1 cut(s)	197
AlwI	GGATC	1 cut(s)	122
ApaLI	GTGCAC	1 cut(s)	197
ApoI	RAATTY	2 cut(s)	41, 191
ArsI	GACNNNNNNTTYG	2 cut(s)	32, 64
AsuHPI	GGTGA	1 cut(s)	269
BaeGI	GKGCMC	1 cut(s)	201
BarI	GAAGNNNNNNTAC	2 cut(s)	329, 361
BauI	CACGAG	1 cut(s)	200
BbsI	GAAGAC	1 cut(s)	42
Bbv12I	GWGCWC	1 cut(s)	201
BmsI	GCATC	1 cut(s)	82
BpiI	GAAGAC	1 cut(s)	42
BpmI	CTGGAG	1 cut(s)	107
BpuEI	CTTGAG	1 cut(s)	352
BsaXI	ACNNNNNCTCC	3 cut(s)	232, 262, 374
Bse3DI	GCAATG	1 cut(s)	359
BseGI	GGATG	1 cut(s)	97
BseMI	GCAATG	1 cut(s)	359
BseSI	GKGCMC	1 cut(s)	201
BsiHKAI	GWGCWC	1 cut(s)	201
BslFI	GGGAC	1 cut(s)	104
BsmFI	GGGAC	1 cut(s)	104
Bsp1286I	GDGCHC	1 cut(s)	201
Bsp143I	GATC	2 cut(s)	114, 271
BspACI	CCGC	1 cut(s)	238
BspHI	TCATGA	1 cut(s)	187
BspPI	GGATC	1 cut(s)	122
BsrDI	GCAATG	1 cut(s)	359
BssMI	GATC	2 cut(s)	114, 271
BssSI	CACGAG	1 cut(s)	200
Bst2BI	CACGAG	1 cut(s)	200
Bst4CI	ACNGT	1 cut(s)	263
Bst6I	CTCTTC	2 cut(s)	144, 366
BstEII	GGTNACC	1 cut(s)	263
BstF5I	GGATG	1 cut(s)	97
BstKTI	GATC	2 cut(s)	117, 274
BstMBI	GATC	2 cut(s)	114, 271
BstPI	GGTNACC	1 cut(s)	263
BstSLI	GKGCMC	1 cut(s)	201
BstV2I	GAAGAC	1 cut(s)	42
BtsCI	GGATG	1 cut(s)	97
CciI	TCATGA	1 cut(s)	187
Csp6I	GTAC	5 cut(s)	73, 223, 279, 316, 346
CviAII	CATG	2 cut(s)	128, 188
CviJI	RGCY	3 cut(s)	57, 244, 308
CviKI_1	RGCY	3 cut(s)	57, 244, 308
CviQI	GTAC	5 cut(s)	73, 223, 279, 316, 346
DpnI	GATC	2 cut(s)	116, 273
DpnII	GATC	2 cut(s)	114, 271
Eam1104I	CTCTTC	2 cut(s)	144, 366
EarI	CTCTTC	2 cut(s)	144, 366
Eco91I	GGTNACC	1 cut(s)	263
EcoO65I	GGTNACC	1 cut(s)	263
FaeI	CATG	2 cut(s)	131, 191
FaiI	YATR	8 cut(s)	129, 156, 161, 189, 207, 209, 354, 356
FaqI	GGGAC	1 cut(s)	104
FatI	CATG	2 cut(s)	127, 187
FauNDI	CATATG	1 cut(s)	354
FokI	GGATG	1 cut(s)	104
GsuI	CTGGAG	1 cut(s)	107
Hin1II	CATG	2 cut(s)	131, 191
HphI	GGTGA	1 cut(s)	269
Hpy166II	GTNNAC	2 cut(s)	199, 281
Hpy188I	TCNGA	1 cut(s)	276
Hpy188III	TCNNGA	3 cut(s)	86, 188, 331
Hpy8I	GTNNAC	2 cut(s)	199, 281
Hpy99I	CGWCG	1 cut(s)	230
HpyAV	CCTTC	1 cut(s)	331
HpyCH4III	ACNGT	1 cut(s)	263
HpyCH4IV	ACGT	1 cut(s)	225
HpyCH4V	TGCA	2 cut(s)	199, 251
HpySE526I	ACGT	1 cut(s)	225
Hsp92II	CATG	2 cut(s)	131, 191
Kzo9I	GATC	2 cut(s)	114, 271
LmnI	GCTCC	1 cut(s)	382
LpnPI	CCDG	4 cut(s)	71, 120, 231, 350
LweI	GCATC	1 cut(s)	82
MaeII	ACGT	1 cut(s)	225
MaeIII	GTNAC	3 cut(s)	16, 257, 263
MalI	GATC	2 cut(s)	116, 273
MboI	GATC	2 cut(s)	114, 271
MboII	GAAGA	4 cut(s)	42, 161, 190, 383
MfeI	CAATTG	1 cut(s)	21
MhlI	GDGCHC	1 cut(s)	201
MluCI	AATT	4 cut(s)	21, 41, 168, 191
MnlI	CCTC	3 cut(s)	82, 234, 327
MseI	TTAA	3 cut(s)	45, 167, 233
MunI	CAATTG	1 cut(s)	21
NdeI	CATATG	1 cut(s)	354
NdeII	GATC	2 cut(s)	114, 271
NlaIII	CATG	2 cut(s)	131, 191
NmuCI	GTSAC	1 cut(s)	257
PagI	TCATGA	1 cut(s)	187
PspEI	GGTNACC	1 cut(s)	263
RsaI	GTAC	5 cut(s)	74, 224, 280, 317, 347
RsaNI	GTAC	5 cut(s)	73, 223, 279, 316, 346
SaqAI	TTAA	3 cut(s)	45, 167, 233
Sau3AI	GATC	2 cut(s)	114, 271
SduI	GDGCHC	1 cut(s)	201
SetI	ASST	3 cut(s)	228, 259, 342
SfaNI	GCATC	1 cut(s)	82
SmlI	CTYRAG	1 cut(s)	331
SmoI	CTYRAG	1 cut(s)	331
Sse9I	AATT	4 cut(s)	21, 41, 168, 191
SsiI	CCGC	1 cut(s)	238
SspI	AATATT	1 cut(s)	31
TaaI	ACNGT	1 cut(s)	263
TaiI	ACGT	1 cut(s)	228
TaqI	TCGA	2 cut(s)	38, 228
TasI	AATT	4 cut(s)	21, 41, 168, 191
TatI	WGTACW	3 cut(s)	72, 278, 315
Tru1I	TTAA	3 cut(s)	45, 167, 233
Tru9I	TTAA	3 cut(s)	45, 167, 233
TseFI	GTSAC	1 cut(s)	257
Tsp45I	GTSAC	1 cut(s)	257
TspDTI	ATGAA	7 cut(s)	24, 71, 116, 204, 224, 309, 341
VneI	GTGCAC	1 cut(s)	197
XapI	RAATTY	2 cut(s)	41, 191

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.