Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0002556.1

Orthogroup ID

OG0017399

Physical Location & Seq

Genomic Coordinates Reverse (-)

75766 .. 78108

Gene Structure 2343 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0002556.1_g000021.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 639 bp

atgagaggtgaaggagctattgcagtattggacgctgccgctggaggttggttagatagaaacaggcttgtggtggtctcaagggaggtaaaaactttagaccatatgtcatacattgtgctctcagaggatttaaatttcttggaggatgaaagcacaaagatatttgcacgtaaagtggctgatcattatagtgcaaggacaaatcaaactctggaagaacgagaagctagtccgatcatccatttaaaaaagcttaacaactggattaagagtgtactaattcagctctatgctcgccgaggagatgctgttcttgatcttgcatgcggaaagggaggtgatctcatcaaatgggacaaggccaaaattgggtactatgttggcattgatattgctgaaggctctatttctttttctttgctaggtttaagtaccttctttaggtcttataatttgggcattatggtcggaatggtgaagaaaatgtgggtggtgtgtgtggtggttttggtcttgaactttggggatcctttggttgataatggcaaaataaaccagcttcagtccttggcaagagctgattacttgccttatgggatcgacttcggagggcatattattccaaacttcagatga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001510 GO:0003674 GO:0003824 GO:0004482 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005845 GO:0006139 GO:0006370 GO:0006396 GO:0006397 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008168 GO:0008170 GO:0008173 GO:0008174 GO:0008757 GO:0009451 GO:0009452 GO:0009987 GO:0010467 GO:0016070 GO:0016071 GO:0016556 GO:0016740 GO:0016741 GO:0032259 GO:0032991 GO:0034518 GO:0034641 GO:0036260 GO:0036265 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043414 GO:0044237 GO:0044238 GO:0044260 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0080009 GO:0090304 GO:0106005 GO:0140098 GO:1901360

KEGG Pathways

Metabolic & Signaling

ko03015 map03015

Pfam Domains

Protein Families

Pox_MCEL

Protein Analysis

212

Amino Acids

23.62

Weight (kDa)

7.75

Isoelectric Point (pI)

25.53

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0017399)

Species	Orthologous Gene IDs
prunus_persica	Prupe.4G197400_v2.0.a1
rosa_chinensis	RchiOBHm_Chr6g0247051
rosa_multiflora	Rmu_sc0002556.1_g000021
rosa_roxburghii	Rroxscaffold_4G00316890 Rroxscaffold_6G00398980
rosa_samantha	Rh4CG160100 Rh5AG063200 Rh5AG444200 Rh5AG444300 Rh6CG423800
rosa_wichuraiana	Rw0G022830 Rw1G010880 Rw2G019180

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	453
AciI	CCGC	2 cut(s)	39, 330
AclWI	GGATC	3 cut(s)	524, 537, 608
AcsI	RAATTY	1 cut(s)	136
AcuI	CTGAAG	3 cut(s)	420, 548, 616
AfaI	GTAC	3 cut(s)	279, 377, 436
AfiI	CCNNNNNNNGG	2 cut(s)	372, 444
AgsI	TTSAA	1 cut(s)	520
AhdI	GACNNNNNGTC	1 cut(s)	106
AloI	GAACNNNNNNTCC	2 cut(s)	297, 329
AluBI	AGCT	6 cut(s)	17, 230, 256, 289, 562, 581
AluI	AGCT	6 cut(s)	17, 230, 256, 289, 562, 581
Alw21I	GWGCWC	1 cut(s)	123
Alw26I	GTCTC	1 cut(s)	82
AlwI	GGATC	3 cut(s)	524, 537, 608
AoxI	GGCC	1 cut(s)	363
ApeKI	GCWGC	1 cut(s)	35
ApoI	RAATTY	1 cut(s)	136
AsuHPI	GGTGA	3 cut(s)	20, 353, 490
BamHI	GGATCC	1 cut(s)	529
Bbv12I	GWGCWC	1 cut(s)	123
BbvI	GCAGC	1 cut(s)	22
BcgI	CGANNNNNNTGC	2 cut(s)	451, 485
BclI	TGATCA	1 cut(s)	184
BcoDI	GTCTC	1 cut(s)	82
BfaI	CTAG	2 cut(s)	231, 425
BisI	GCNGC	2 cut(s)	36, 39
BlsI	GCNGC	2 cut(s)	37, 40
BmeRI	GACNNNNNGTC	1 cut(s)	106
BmiI	GGNNCC	1 cut(s)	531
BmsI	GCATC	1 cut(s)	298
BplI	GAGNNNNNCTC	2 cut(s)	330, 362
BpmI	CTGGAG	1 cut(s)	63
BpuEI	CTTGAG	1 cut(s)	64
BsaAI	YACGTR	1 cut(s)	173
BsaI	GGTCTC	1 cut(s)	82
BsaJI	CCNNGG	2 cut(s)	301, 570
BsaXI	ACNNNNNCTCC	2 cut(s)	297, 327
Bsc4I	CCNNNNNNNGG	2 cut(s)	372, 444
Bse1I	ACTGG	1 cut(s)	269
BseDI	CCNNGG	2 cut(s)	301, 570
BseGI	GGATG	2 cut(s)	154, 240
BseLI	CCNNNNNNNGG	2 cut(s)	372, 444
BseMII	CTCAG	1 cut(s)	138
BseNI	ACTGG	1 cut(s)	269
BseRI	GAGGAG	1 cut(s)	318
BseXI	GCAGC	1 cut(s)	22
BshFI	GGCC	1 cut(s)	365
BsiHKAI	GWGCWC	1 cut(s)	123
BslFI	GGGAC	1 cut(s)	371
BslI	CCNNNNNNNGG	2 cut(s)	372, 444
BsmAI	GTCTC	1 cut(s)	82
BsmFI	GGGAC	1 cut(s)	371
BsnI	GGCC	1 cut(s)	365
Bso31I	GGTCTC	1 cut(s)	82
Bsp1286I	GDGCHC	1 cut(s)	123
Bsp143I	GATC	6 cut(s)	184, 237, 319, 343, 529, 600
BspACI	CCGC	2 cut(s)	39, 330
BspANI	GGCC	1 cut(s)	365
BspCNI	CTCAG	1 cut(s)	137
BspLI	GGNNCC	1 cut(s)	531
BspPI	GGATC	3 cut(s)	524, 537, 608
BspTNI	GGTCTC	1 cut(s)	82
BsrI	ACTGG	1 cut(s)	269
BssECI	CCNNGG	2 cut(s)	301, 570
BssMI	GATC	6 cut(s)	184, 237, 319, 343, 529, 600
BssT1I	CCWWGG	1 cut(s)	570
BstBAI	YACGTR	1 cut(s)	173
BstC8I	GCNNGC	2 cut(s)	298, 328
BstDEI	CTNAG	1 cut(s)	124
BstENI	CCTNNNNNAGG	1 cut(s)	442
BstF5I	GGATG	2 cut(s)	154, 240
BstKTI	GATC	6 cut(s)	187, 240, 322, 346, 532, 603
BstMAI	GTCTC	1 cut(s)	82
BstMBI	GATC	6 cut(s)	184, 237, 319, 343, 529, 600
BstNSI	RCATGY	1 cut(s)	330
BstV1I	GCAGC	1 cut(s)	22
BstX2I	RGATCY	1 cut(s)	529
BstYI	RGATCY	1 cut(s)	529
BsuRI	GGCC	1 cut(s)	365
BtsCI	GGATG	2 cut(s)	154, 240
Cac8I	GCNNGC	2 cut(s)	298, 328
CseI	GACGC	1 cut(s)	41
Csp6I	GTAC	3 cut(s)	278, 376, 435
CviAII	CATG	1 cut(s)	327
CviQI	GTAC	3 cut(s)	278, 376, 435
DdeI	CTNAG	1 cut(s)	124
DpnI	GATC	6 cut(s)	186, 239, 321, 345, 531, 602
DpnII	GATC	6 cut(s)	184, 237, 319, 343, 529, 600
DraI	TTTAAA	2 cut(s)	135, 249
DriI	GACNNNNNGTC	1 cut(s)	106
Eam1105I	GACNNNNNGTC	1 cut(s)	106
Eco130I	CCWWGG	1 cut(s)	570
Eco31I	GGTCTC	1 cut(s)	82
Eco57I	CTGAAG	3 cut(s)	420, 548, 616
EcoNI	CCTNNNNNAGG	1 cut(s)	442
EcoT14I	CCWWGG	1 cut(s)	570
ErhI	CCWWGG	1 cut(s)	570
FaeI	CATG	1 cut(s)	330
FaqI	GGGAC	1 cut(s)	371
FatI	CATG	1 cut(s)	326
FauNDI	CATATG	1 cut(s)	105
FbaI	TGATCA	1 cut(s)	184
Fnu4HI	GCNGC	2 cut(s)	36, 39
FokI	GGATG	2 cut(s)	161, 227
Fsp4HI	GCNGC	2 cut(s)	36, 39
FspBI	CTAG	2 cut(s)	231, 425
GluI	GCNGC	2 cut(s)	36, 39
GsuI	CTGGAG	1 cut(s)	63
HaeIII	GGCC	1 cut(s)	365
HgaI	GACGC	1 cut(s)	41
Hin1II	CATG	1 cut(s)	330
HindIII	AAGCTT	1 cut(s)	254
HphI	GGTGA	3 cut(s)	20, 353, 490
Hpy166II	GTNNAC	1 cut(s)	278
Hpy188I	TCNGA	5 cut(s)	127, 237, 473, 611, 635
Hpy188III	TCNNGA	3 cut(s)	215, 317, 517
Hpy8I	GTNNAC	1 cut(s)	278
HpyAV	CCTTC	3 cut(s)	5, 395, 448
HpyCH4IV	ACGT	1 cut(s)	172
HpyCH4V	TGCA	4 cut(s)	23, 170, 197, 326
HpyF3I	CTNAG	1 cut(s)	124
HpySE526I	ACGT	1 cut(s)	172
Hsp92II	CATG	1 cut(s)	330
Ksp22I	TGATCA	1 cut(s)	184
Kzo9I	GATC	6 cut(s)	184, 237, 319, 343, 529, 600
LmnI	GCTCC	1 cut(s)	14
LpnPI	CCDG	5 cut(s)	27, 49, 200, 250, 572
Lsp1109I	GCAGC	1 cut(s)	22
LweI	GCATC	1 cut(s)	298
MaeI	CTAG	2 cut(s)	231, 425
MaeII	ACGT	1 cut(s)	172
MalI	GATC	6 cut(s)	186, 239, 321, 345, 531, 602
MboI	GATC	6 cut(s)	184, 237, 319, 343, 529, 600
MboII	GAAGA	2 cut(s)	230, 493
MflI	RGATCY	1 cut(s)	529
MhlI	GDGCHC	1 cut(s)	123
MluCI	AATT	4 cut(s)	136, 282, 369, 454
MmeI	TCCRAC	1 cut(s)	451
MnlI	CCTC	7 cut(s)	38, 79, 121, 139, 296, 332, 605
MseI	TTAA	5 cut(s)	134, 248, 258, 270, 431
MslI	CAYNNNNRTG	1 cut(s)	192
MspA1I	CMGCKG	1 cut(s)	41
NdeI	CATATG	1 cut(s)	105
NdeII	GATC	6 cut(s)	184, 237, 319, 343, 529, 600
NlaIII	CATG	1 cut(s)	330
NlaIV	GGNNCC	1 cut(s)	531
NmeAIII	GCCGAG	1 cut(s)	326
NspI	RCATGY	1 cut(s)	330
PaeI	GCATGC	1 cut(s)	330
PkrI	GCNGC	2 cut(s)	37, 40
Ppu21I	YACGTR	1 cut(s)	173
PsiI	TTATAA	1 cut(s)	453
PspN4I	GGNNCC	1 cut(s)	531
PsuI	RGATCY	1 cut(s)	529
RsaI	GTAC	3 cut(s)	279, 377, 436
RsaNI	GTAC	3 cut(s)	278, 376, 435
RseI	CAYNNNNRTG	1 cut(s)	192
SaqAI	TTAA	5 cut(s)	134, 248, 258, 270, 431
SatI	GCNGC	2 cut(s)	36, 39
Sau3AI	GATC	6 cut(s)	184, 237, 319, 343, 529, 600
SduI	GDGCHC	1 cut(s)	123
SfaNI	GCATC	1 cut(s)	298
SmiI	ATTTAAAT	1 cut(s)	135
SmiMI	CAYNNNNRTG	1 cut(s)	192
SmlI	CTYRAG	1 cut(s)	79
SmoI	CTYRAG	1 cut(s)	79
SphI	GCATGC	1 cut(s)	330
Sse9I	AATT	4 cut(s)	136, 282, 369, 454
SsiI	CCGC	2 cut(s)	39, 330
SspMI	CTAG	2 cut(s)	231, 425
StyI	CCWWGG	1 cut(s)	570
SwaI	ATTTAAAT	1 cut(s)	135
TaiI	ACGT	1 cut(s)	175
TaqI	TCGA	1 cut(s)	603
TasI	AATT	4 cut(s)	136, 282, 369, 454
TatI	WGTACW	1 cut(s)	277
TauI	GCSGC	1 cut(s)	41
Tru1I	TTAA	5 cut(s)	134, 248, 258, 270, 431
Tru9I	TTAA	5 cut(s)	134, 248, 258, 270, 431
TseI	GCWGC	1 cut(s)	35
TspDTI	ATGAA	1 cut(s)	165
XagI	CCTNNNNNAGG	1 cut(s)	442
XapI	RAATTY	1 cut(s)	136
XceI	RCATGY	1 cut(s)	330
XspI	CTAG	2 cut(s)	231, 425

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.