Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000004

Orthogroup ID

OG0017399

Physical Location & Seq

Genomic Coordinates Forward (+)

41851129 .. 41852154

Gene Structure 1026 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_4G00316890.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 366 bp

ATGGTTCCTTCTCTTATCGAACAGATTAAGAGTGTACTAATTCAGCTCTATGCTCGCCGAGGAGATGCTGTTCTTGATCTTGCATGCGGAAAGGGAGGTGATCTCATCAAATGGGACAAGGCCAAAATTGGGTACTATGTTGGCATTGATATTGCTGAAGGCTCTAAAATGTGGGTGGTGTGTGTAGTGGTTTTGGTCTTGAACTTTGGGGATCCTTTGGTTGATAATGGCAAAATAAACCAGCTTCGGTCCTTGGCAAGAGCTGATTACTTGCCTTATGGGATCGACTTCGGAGGACCAACCGGAAGATTTTCCAATGGGAAAACTGTTGTTGATGCTGTTGTCAAAATAAGTTTAGCTATTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001510 GO:0003674 GO:0003824 GO:0004482 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005845 GO:0006139 GO:0006370 GO:0006396 GO:0006397 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008168 GO:0008170 GO:0008173 GO:0008174 GO:0008757 GO:0009451 GO:0009452 GO:0009987 GO:0010467 GO:0016070 GO:0016071 GO:0016556 GO:0016740 GO:0016741 GO:0032259 GO:0032991 GO:0034518 GO:0034641 GO:0036260 GO:0036265 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043414 GO:0044237 GO:0044238 GO:0044260 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0080009 GO:0090304 GO:0106005 GO:0140098 GO:1901360

KEGG Pathways

Metabolic & Signaling

ko03015 map03015

Pfam Domains

Protein Families

Pox_MCEL

Protein Analysis

121

Amino Acids

13.06

Weight (kDa)

8.56

Isoelectric Point (pI)

19.57

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
mRNA_G-N7_MeTrfase	PF03291	8 - 55	2.2e-17	mRNA (guanine-N(7))-methyltransferase domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0017399)

Species	Orthologous Gene IDs
prunus_persica	Prupe.4G197400_v2.0.a1
rosa_chinensis	RchiOBHm_Chr6g0247051
rosa_multiflora	Rmu_sc0002556.1_g000021
rosa_roxburghii	Rroxscaffold_4G00316890 Rroxscaffold_6G00398980
rosa_samantha	Rh4CG160100 Rh5AG063200 Rh5AG444200 Rh5AG444300 Rh6CG423800
rosa_wichuraiana	Rw0G022830 Rw1G010880 Rw2G019180

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	87
AclWI	GGATC	3 cut(s)	206, 219, 290
AcuI	CTGAAG	1 cut(s)	177
AfaI	GTAC	2 cut(s)	36, 134
AfiI	CCNNNNNNNGG	1 cut(s)	129
AgsI	TTSAA	1 cut(s)	202
AloI	GAACNNNNNNTCC	2 cut(s)	54, 86
AluBI	AGCT	4 cut(s)	46, 244, 263, 359
AluI	AGCT	4 cut(s)	46, 244, 263, 359
AlwI	GGATC	3 cut(s)	206, 219, 290
AoxI	GGCC	1 cut(s)	120
Asp700I	GAANNNNTTC	1 cut(s)	310
AspS9I	GGNCC	2 cut(s)	249, 296
AsuHPI	GGTGA	1 cut(s)	110
AvaII	GGWCC	2 cut(s)	249, 296
BamHI	GGATCC	1 cut(s)	211
Bme18I	GGWCC	2 cut(s)	249, 296
BmgT120I	GGNCC	2 cut(s)	249, 296
BmiI	GGNNCC	2 cut(s)	6, 213
BmsI	GCATC	2 cut(s)	55, 325
BplI	GAGNNNNNCTC	2 cut(s)	87, 119
BsaJI	CCNNGG	2 cut(s)	58, 252
BsaWI	WCCGGW	1 cut(s)	302
BsaXI	ACNNNNNCTCC	2 cut(s)	54, 84
Bsc4I	CCNNNNNNNGG	1 cut(s)	129
BseDI	CCNNGG	2 cut(s)	58, 252
BseLI	CCNNNNNNNGG	1 cut(s)	129
BseRI	GAGGAG	1 cut(s)	75
BshFI	GGCC	1 cut(s)	122
BsiSI	CCGG	1 cut(s)	303
BslFI	GGGAC	1 cut(s)	128
BslI	CCNNNNNNNGG	1 cut(s)	129
BsmFI	GGGAC	1 cut(s)	128
BsnI	GGCC	1 cut(s)	122
Bsp143I	GATC	4 cut(s)	76, 100, 211, 282
BspACI	CCGC	1 cut(s)	87
BspANI	GGCC	1 cut(s)	122
BspLI	GGNNCC	2 cut(s)	6, 213
BspPI	GGATC	3 cut(s)	206, 219, 290
BssECI	CCNNGG	2 cut(s)	58, 252
BssMI	GATC	4 cut(s)	76, 100, 211, 282
BssT1I	CCWWGG	1 cut(s)	252
Bst4CI	ACNGT	1 cut(s)	328
BstC8I	GCNNGC	2 cut(s)	55, 85
BstKTI	GATC	4 cut(s)	79, 103, 214, 285
BstMBI	GATC	4 cut(s)	76, 100, 211, 282
BstNSI	RCATGY	1 cut(s)	87
BstX2I	RGATCY	1 cut(s)	211
BstYI	RGATCY	1 cut(s)	211
BsuRI	GGCC	1 cut(s)	122
Cac8I	GCNNGC	2 cut(s)	55, 85
Cfr13I	GGNCC	2 cut(s)	249, 296
Csp6I	GTAC	2 cut(s)	35, 133
CviAII	CATG	1 cut(s)	84
CviJI	RGCY	6 cut(s)	46, 122, 162, 244, 263, 359
CviKI_1	RGCY	6 cut(s)	46, 122, 162, 244, 263, 359
CviQI	GTAC	2 cut(s)	35, 133
DpnI	GATC	4 cut(s)	78, 102, 213, 284
DpnII	GATC	4 cut(s)	76, 100, 211, 282
Eco130I	CCWWGG	1 cut(s)	252
Eco47I	GGWCC	2 cut(s)	249, 296
Eco57I	CTGAAG	1 cut(s)	177
EcoT14I	CCWWGG	1 cut(s)	252
ErhI	CCWWGG	1 cut(s)	252
FaeI	CATG	1 cut(s)	87
FaiI	YATR	4 cut(s)	51, 85, 138, 279
FaqI	GGGAC	1 cut(s)	128
FatI	CATG	1 cut(s)	83
HaeIII	GGCC	1 cut(s)	122
HapII	CCGG	1 cut(s)	303
Hin1II	CATG	1 cut(s)	87
HpaII	CCGG	1 cut(s)	303
HphI	GGTGA	1 cut(s)	110
Hpy166II	GTNNAC	1 cut(s)	35
Hpy188I	TCNGA	1 cut(s)	293
Hpy188III	TCNNGA	2 cut(s)	74, 199
Hpy8I	GTNNAC	1 cut(s)	35
HpyAV	CCTTC	2 cut(s)	18, 152
HpyCH4III	ACNGT	1 cut(s)	328
HpyCH4V	TGCA	1 cut(s)	83
Hsp92II	CATG	1 cut(s)	87
Kzo9I	GATC	4 cut(s)	76, 100, 211, 282
LpnPI	CCDG	2 cut(s)	254, 316
LweI	GCATC	2 cut(s)	55, 325
MalI	GATC	4 cut(s)	78, 102, 213, 284
MboI	GATC	4 cut(s)	76, 100, 211, 282
MboII	GAAGA	1 cut(s)	318
MflI	RGATCY	1 cut(s)	211
MluCI	AATT	2 cut(s)	39, 126
MnlI	CCTC	3 cut(s)	53, 89, 287
MroXI	GAANNNNTTC	1 cut(s)	310
MseI	TTAA	2 cut(s)	27, 364
MspI	CCGG	1 cut(s)	303
NdeII	GATC	4 cut(s)	76, 100, 211, 282
NlaIII	CATG	1 cut(s)	87
NlaIV	GGNNCC	2 cut(s)	6, 213
NmeAIII	GCCGAG	1 cut(s)	83
NspI	RCATGY	1 cut(s)	87
PaeI	GCATGC	1 cut(s)	87
PdmI	GAANNNNTTC	1 cut(s)	310
PspN4I	GGNNCC	2 cut(s)	6, 213
PspPI	GGNCC	2 cut(s)	249, 296
PsuI	RGATCY	1 cut(s)	211
RsaI	GTAC	2 cut(s)	36, 134
RsaNI	GTAC	2 cut(s)	35, 133
SaqAI	TTAA	2 cut(s)	27, 364
Sau3AI	GATC	4 cut(s)	76, 100, 211, 282
Sau96I	GGNCC	2 cut(s)	249, 296
SetI	ASST	5 cut(s)	48, 100, 246, 265, 361
SfaNI	GCATC	2 cut(s)	55, 325
SinI	GGWCC	2 cut(s)	249, 296
SphI	GCATGC	1 cut(s)	87
Sse9I	AATT	2 cut(s)	39, 126
SsiI	CCGC	1 cut(s)	87
StyI	CCWWGG	1 cut(s)	252
TaaI	ACNGT	1 cut(s)	328
TaqI	TCGA	2 cut(s)	18, 285
TaqII	GACCGA	1 cut(s)	237
TasI	AATT	2 cut(s)	39, 126
TatI	WGTACW	1 cut(s)	34
Tru1I	TTAA	2 cut(s)	27, 364
Tru9I	TTAA	2 cut(s)	27, 364
VpaK11BI	GGWCC	2 cut(s)	249, 296
XceI	RCATGY	1 cut(s)	87
XmnI	GAANNNNTTC	1 cut(s)	310

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.