Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4C

Orthogroup ID

OG0017399

Physical Location & Seq

Genomic Coordinates Reverse (-)

35142194 .. 35154204

Gene Structure 12011 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4CG160100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 519 bp

ATGGTGAAGAAAATGTGGGTGGTGTGTGTGGTGGTTTTGGTCTTGAACTTTGGGGATCCTTTGGTTGATAATGGCAAAATAAACCAGCTTCAATCCTTGGCAAGAGCTGATTACTTGCCTTATGGGATCGACTTCGGCGGACCAACTGGAAGATTTTCCAATGGAAAAACTATTGTTGATGCTGTTGCATATGGTAATGAAGCAGCAGACTTGAAAGTTACACTACTTGGTAGAGGGAAGACTTGCAATTCTGGTACAATTACCACTTTCTTAGCATATCATCCGCCATTAAGAATCGCACATACCGCACTGGTGGTACAAGCATTTACAGTGTGGAATAGTTTCCCGATAAACACAAACCCTAACTGTCCTCCATTCACTAACTGTCCTCCATTCCAGTCTAAATCATTGCTCTTGTTGGTGTCCAATGATGTGTTGGATTTTGTTGCCTCTGATGCTCGACTTGTCTATGTGGGCAAGACTGCTGGGTACCATAGCAGAACCCAGGTGAAGCTCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002376 GO:0005575 GO:0005576 GO:0005618 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006950 GO:0006952 GO:0006955 GO:0008150 GO:0009507 GO:0009534 GO:0009536 GO:0009579 GO:0009605 GO:0009607 GO:0009627 GO:0009814 GO:0030312 GO:0031976 GO:0031984 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0045087 GO:0048046 GO:0050896 GO:0051704 GO:0051707 GO:0071944 GO:0098542

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Lipase_GDSL

Protein Analysis

172

Amino Acids

18.69

Weight (kDa)

9.12

Isoelectric Point (pI)

12.27

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0017399)

Species	Orthologous Gene IDs
prunus_persica	Prupe.4G197400_v2.0.a1
rosa_chinensis	RchiOBHm_Chr6g0247051
rosa_multiflora	Rmu_sc0002556.1_g000021
rosa_roxburghii	Rroxscaffold_4G00316890 Rroxscaffold_6G00398980
rosa_samantha	Rh4CG160100 Rh5AG063200 Rh5AG444200 Rh5AG444300 Rh6CG423800
rosa_wichuraiana	Rw0G022830 Rw1G010880 Rw2G019180

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	489
AccB1I	GGYRCC	1 cut(s)	489
AciI	CCGC	3 cut(s)	138, 284, 306
AclWI	GGATC	3 cut(s)	50, 63, 134
AfaI	GTAC	3 cut(s)	256, 318, 491
AgsI	TTSAA	3 cut(s)	46, 92, 214
AjnI	CCWGG	1 cut(s)	504
AluBI	AGCT	3 cut(s)	88, 107, 514
AluI	AGCT	3 cut(s)	88, 107, 514
AlwI	GGATC	3 cut(s)	50, 63, 134
ApeKI	GCWGC	1 cut(s)	203
Asp700I	GAANNNNTTC	2 cut(s)	154, 341
Asp718I	GGTACC	1 cut(s)	489
AspS9I	GGNCC	1 cut(s)	140
AsuHPI	GGTGA	1 cut(s)	16
AvaII	GGWCC	1 cut(s)	140
BamHI	GGATCC	1 cut(s)	55
BanI	GGYRCC	1 cut(s)	489
BbsI	GAAGAC	1 cut(s)	245
BbvI	GCAGC	1 cut(s)	215
BciT130I	CCWGG	1 cut(s)	506
BisI	GCNGC	1 cut(s)	204
BlsI	GCNGC	1 cut(s)	205
Bme1390I	CCNGG	1 cut(s)	506
Bme18I	GGWCC	1 cut(s)	140
BmgT120I	GGNCC	1 cut(s)	140
BmiI	GGNNCC	2 cut(s)	57, 491
BmrFI	CCNGG	1 cut(s)	506
BmsI	GCATC	2 cut(s)	169, 445
BpiI	GAAGAC	1 cut(s)	245
BsaJI	CCNNGG	2 cut(s)	96, 504
Bse1I	ACTGG	3 cut(s)	151, 315, 397
Bse3DI	GCAATG	1 cut(s)	407
BseBI	CCWGG	1 cut(s)	506
BseDI	CCNNGG	2 cut(s)	96, 504
BseGI	GGATG	1 cut(s)	280
BseMI	GCAATG	1 cut(s)	407
BseNI	ACTGG	3 cut(s)	151, 315, 397
BseXI	GCAGC	1 cut(s)	215
BseYI	CCCAGC	1 cut(s)	485
BshNI	GGYRCC	1 cut(s)	489
Bsp143I	GATC	2 cut(s)	55, 126
BspACI	CCGC	3 cut(s)	138, 284, 306
BspLI	GGNNCC	2 cut(s)	57, 491
BspPI	GGATC	3 cut(s)	50, 63, 134
BspT107I	GGYRCC	1 cut(s)	489
BsrDI	GCAATG	1 cut(s)	407
BsrI	ACTGG	3 cut(s)	151, 315, 397
BssECI	CCNNGG	2 cut(s)	96, 504
BssMI	GATC	2 cut(s)	55, 126
BssT1I	CCWWGG	1 cut(s)	96
Bst2UI	CCWGG	1 cut(s)	506
Bst4CI	ACNGT	3 cut(s)	331, 368, 386
BstDEI	CTNAG	1 cut(s)	271
BstF5I	GGATG	1 cut(s)	280
BstKTI	GATC	2 cut(s)	58, 129
BstMBI	GATC	2 cut(s)	55, 126
BstMWI	GCNNNNNNNGC	2 cut(s)	305, 455
BstNI	CCWGG	1 cut(s)	506
BstSCI	CCNGG	1 cut(s)	504
BstV1I	GCAGC	1 cut(s)	215
BstV2I	GAAGAC	1 cut(s)	245
BstX2I	RGATCY	1 cut(s)	55
BstYI	RGATCY	1 cut(s)	55
BtsCI	GGATG	1 cut(s)	280
BtsIMutI	CAGTG	2 cut(s)	308, 336
Cfr13I	GGNCC	1 cut(s)	140
Csp6I	GTAC	3 cut(s)	255, 317, 490
CviJI	RGCY	3 cut(s)	88, 107, 514
CviKI_1	RGCY	3 cut(s)	88, 107, 514
CviQI	GTAC	3 cut(s)	255, 317, 490
DdeI	CTNAG	1 cut(s)	271
DpnI	GATC	2 cut(s)	57, 128
DpnII	GATC	2 cut(s)	55, 126
EciI	GGCGGA	2 cut(s)	153, 273
Eco130I	CCWWGG	1 cut(s)	96
Eco47I	GGWCC	1 cut(s)	140
EcoRII	CCWGG	1 cut(s)	504
EcoT14I	CCWWGG	1 cut(s)	96
ErhI	CCWWGG	1 cut(s)	96
FaiI	YATR	7 cut(s)	123, 190, 192, 277, 303, 471, 495
FauNDI	CATATG	1 cut(s)	190
Fnu4HI	GCNGC	1 cut(s)	204
FokI	GGATG	1 cut(s)	267
Fsp4HI	GCNGC	1 cut(s)	204
GluI	GCNGC	1 cut(s)	204
GsaI	CCCAGC	1 cut(s)	489
HinfI	GANTC	1 cut(s)	294
HphI	GGTGA	1 cut(s)	16
Hpy188I	TCNGA	1 cut(s)	454
Hpy188III	TCNNGA	2 cut(s)	43, 346
HpyCH4III	ACNGT	3 cut(s)	331, 368, 386
HpyCH4V	TGCA	2 cut(s)	188, 246
HpyF10VI	GCNNNNNNNGC	2 cut(s)	305, 455
HpyF3I	CTNAG	1 cut(s)	271
KpnI	GGTACC	1 cut(s)	493
Kzo9I	GATC	2 cut(s)	55, 126
LpnPI	CCDG	7 cut(s)	98, 132, 237, 296, 410, 471, 491
Lsp1109I	GCAGC	1 cut(s)	215
LweI	GCATC	2 cut(s)	169, 445
MaeIII	GTNAC	1 cut(s)	217
MalI	GATC	2 cut(s)	57, 128
MboI	GATC	2 cut(s)	55, 126
MboII	GAAGA	3 cut(s)	19, 162, 250
MflI	RGATCY	1 cut(s)	55
MluCI	AATT	2 cut(s)	247, 258
MmeI	TCCRAC	1 cut(s)	417
MnlI	CCTC	4 cut(s)	227, 381, 399, 460
MroXI	GAANNNNTTC	2 cut(s)	154, 341
MseI	TTAA	1 cut(s)	290
MspR9I	CCNGG	1 cut(s)	506
MvaI	CCWGG	1 cut(s)	506
MwoI	GCNNNNNNNGC	2 cut(s)	305, 455
NdeI	CATATG	1 cut(s)	190
NdeII	GATC	2 cut(s)	55, 126
NlaIV	GGNNCC	2 cut(s)	57, 491
PdmI	GAANNNNTTC	2 cut(s)	154, 341
PfeI	GAWTC	1 cut(s)	294
PkrI	GCNGC	1 cut(s)	205
Psp6I	CCWGG	1 cut(s)	504
PspFI	CCCAGC	1 cut(s)	485
PspGI	CCWGG	1 cut(s)	504
PspN4I	GGNNCC	2 cut(s)	57, 491
PspPI	GGNCC	1 cut(s)	140
PsuI	RGATCY	1 cut(s)	55
RsaI	GTAC	3 cut(s)	256, 318, 491
RsaNI	GTAC	3 cut(s)	255, 317, 490
SaqAI	TTAA	1 cut(s)	290
SatI	GCNGC	1 cut(s)	204
Sau3AI	GATC	2 cut(s)	55, 126
Sau96I	GGNCC	1 cut(s)	140
ScrFI	CCNGG	1 cut(s)	506
SetI	ASST	4 cut(s)	90, 109, 510, 516
SfaNI	GCATC	2 cut(s)	169, 445
SinI	GGWCC	1 cut(s)	140
Sse9I	AATT	2 cut(s)	247, 258
SsiI	CCGC	3 cut(s)	138, 284, 306
StyD4I	CCNGG	1 cut(s)	504
StyI	CCWWGG	1 cut(s)	96
TaaI	ACNGT	3 cut(s)	331, 368, 386
TaqI	TCGA	2 cut(s)	129, 460
TasI	AATT	2 cut(s)	247, 258
TfiI	GAWTC	1 cut(s)	294
Tru1I	TTAA	1 cut(s)	290
Tru9I	TTAA	1 cut(s)	290
TscAI	CASTG	2 cut(s)	315, 336
TseI	GCWGC	1 cut(s)	203
TspDTI	ATGAA	1 cut(s)	213
TspRI	CASTG	2 cut(s)	315, 336
VpaK11BI	GGWCC	1 cut(s)	140
XcmI	CCANNNNNNNNNTGG	1 cut(s)	433
XmnI	GAANNNNTTC	2 cut(s)	154, 341

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.