Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000006

Orthogroup ID

OG0017399

Physical Location & Seq

Genomic Coordinates Reverse (-)

20864992 .. 20867050

Gene Structure 2059 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_6G00398980.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 234 bp

ATGAGAGGTGAAGGAGCTATTGCAGTATTGGACGCTGCCATTGGAGGTTGGTTAGATAGAAACAGGCTTGTGGTGGTCTCAAGGGAGATTAAGAGTGTACTAATTCAGCTCTATGCTCGCCGAGGAGATGCTGTTCTTGATCTTGCATGCGGAAAGGGAGGTGATCTCATCAAATGGGACAAGGCCAAAATTGGGTACTATGTTGGCATTGATATTGCTGAAGGCTCTGTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001510 GO:0003674 GO:0003824 GO:0004482 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005845 GO:0006139 GO:0006370 GO:0006396 GO:0006397 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008168 GO:0008170 GO:0008173 GO:0008174 GO:0008757 GO:0009451 GO:0009452 GO:0009987 GO:0010467 GO:0016070 GO:0016071 GO:0016556 GO:0016740 GO:0016741 GO:0032259 GO:0032991 GO:0034518 GO:0034641 GO:0036260 GO:0036265 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043414 GO:0044237 GO:0044238 GO:0044260 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0080009 GO:0090304 GO:0106005 GO:0140098 GO:1901360

KEGG Pathways

Metabolic & Signaling

ko03015 map03015

Pfam Domains

Protein Families

Pox_MCEL

Protein Analysis

77

Amino Acids

8.26

Weight (kDa)

7.86

Isoelectric Point (pI)

24.54

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
mRNA_G-N7_MeTrfase	PF03291	29 - 77	2.7e-18	mRNA (guanine-N(7))-methyltransferase domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

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Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0017399)

Species	Orthologous Gene IDs
prunus_persica	Prupe.4G197400_v2.0.a1
rosa_chinensis	RchiOBHm_Chr6g0247051
rosa_multiflora	Rmu_sc0002556.1_g000021
rosa_roxburghii	Rroxscaffold_4G00316890 Rroxscaffold_6G00398980
rosa_samantha	Rh4CG160100 Rh5AG063200 Rh5AG444200 Rh5AG444300 Rh6CG423800
rosa_wichuraiana	Rw0G022830 Rw1G010880 Rw2G019180

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	150
AfaI	GTAC	2 cut(s)	99, 197
AfiI	CCNNNNNNNGG	1 cut(s)	192
AloI	GAACNNNNNNTCC	2 cut(s)	117, 149
AluBI	AGCT	2 cut(s)	17, 109
AluI	AGCT	2 cut(s)	17, 109
Alw26I	GTCTC	1 cut(s)	82
AoxI	GGCC	1 cut(s)	183
ApeKI	GCWGC	1 cut(s)	35
AsuHPI	GGTGA	2 cut(s)	20, 173
BbvI	GCAGC	1 cut(s)	22
BcoDI	GTCTC	1 cut(s)	82
BisI	GCNGC	1 cut(s)	36
BlsI	GCNGC	1 cut(s)	37
BmsI	GCATC	1 cut(s)	118
BplI	GAGNNNNNCTC	2 cut(s)	150, 182
BpuEI	CTTGAG	1 cut(s)	64
BsaI	GGTCTC	1 cut(s)	82
BsaJI	CCNNGG	1 cut(s)	121
BsaXI	ACNNNNNCTCC	2 cut(s)	117, 147
Bsc4I	CCNNNNNNNGG	1 cut(s)	192
BseDI	CCNNGG	1 cut(s)	121
BseLI	CCNNNNNNNGG	1 cut(s)	192
BseRI	GAGGAG	1 cut(s)	138
BseXI	GCAGC	1 cut(s)	22
BshFI	GGCC	1 cut(s)	185
BslFI	GGGAC	1 cut(s)	191
BslI	CCNNNNNNNGG	1 cut(s)	192
BsmAI	GTCTC	1 cut(s)	82
BsmFI	GGGAC	1 cut(s)	191
BsnI	GGCC	1 cut(s)	185
Bso31I	GGTCTC	1 cut(s)	82
Bsp143I	GATC	2 cut(s)	139, 163
BspACI	CCGC	1 cut(s)	150
BspANI	GGCC	1 cut(s)	185
BspTNI	GGTCTC	1 cut(s)	82
BssECI	CCNNGG	1 cut(s)	121
BssMI	GATC	2 cut(s)	139, 163
BstC8I	GCNNGC	2 cut(s)	118, 148
BstKTI	GATC	2 cut(s)	142, 166
BstMAI	GTCTC	1 cut(s)	82
BstMBI	GATC	2 cut(s)	139, 163
BstNSI	RCATGY	1 cut(s)	150
BstV1I	GCAGC	1 cut(s)	22
BsuRI	GGCC	1 cut(s)	185
Cac8I	GCNNGC	2 cut(s)	118, 148
CseI	GACGC	1 cut(s)	41
Csp6I	GTAC	2 cut(s)	98, 196
CviAII	CATG	1 cut(s)	147
CviJI	RGCY	5 cut(s)	17, 67, 109, 185, 225
CviKI_1	RGCY	5 cut(s)	17, 67, 109, 185, 225
CviQI	GTAC	2 cut(s)	98, 196
DpnI	GATC	2 cut(s)	141, 165
DpnII	GATC	2 cut(s)	139, 163
Eco31I	GGTCTC	1 cut(s)	82
FaeI	CATG	1 cut(s)	150
FaiI	YATR	3 cut(s)	114, 148, 201
FaqI	GGGAC	1 cut(s)	191
FatI	CATG	1 cut(s)	146
Fnu4HI	GCNGC	1 cut(s)	36
Fsp4HI	GCNGC	1 cut(s)	36
GluI	GCNGC	1 cut(s)	36
HaeIII	GGCC	1 cut(s)	185
HgaI	GACGC	1 cut(s)	41
Hin1II	CATG	1 cut(s)	150
HphI	GGTGA	2 cut(s)	20, 173
Hpy166II	GTNNAC	1 cut(s)	98
Hpy188III	TCNNGA	1 cut(s)	137
Hpy8I	GTNNAC	1 cut(s)	98
HpyAV	CCTTC	2 cut(s)	5, 215
HpyCH4V	TGCA	2 cut(s)	23, 146
Hsp92II	CATG	1 cut(s)	150
Kzo9I	GATC	2 cut(s)	139, 163
LmnI	GCTCC	1 cut(s)	14
LpnPI	CCDG	1 cut(s)	49
Lsp1109I	GCAGC	1 cut(s)	22
LweI	GCATC	1 cut(s)	118
MalI	GATC	2 cut(s)	141, 165
MboI	GATC	2 cut(s)	139, 163
MluCI	AATT	2 cut(s)	102, 189
MnlI	CCTC	3 cut(s)	38, 116, 152
MseI	TTAA	2 cut(s)	90, 232
NdeII	GATC	2 cut(s)	139, 163
NlaIII	CATG	1 cut(s)	150
NmeAIII	GCCGAG	1 cut(s)	146
NspI	RCATGY	1 cut(s)	150
PaeI	GCATGC	1 cut(s)	150
PkrI	GCNGC	1 cut(s)	37
RsaI	GTAC	2 cut(s)	99, 197
RsaNI	GTAC	2 cut(s)	98, 196
SaqAI	TTAA	2 cut(s)	90, 232
SatI	GCNGC	1 cut(s)	36
Sau3AI	GATC	2 cut(s)	139, 163
SetI	ASST	5 cut(s)	10, 19, 49, 111, 163
SfaNI	GCATC	1 cut(s)	118
SgeI	CNNG	9 cut(s)	76, 80, 93, 129, 134, 149, 155, 159, 193
SmlI	CTYRAG	1 cut(s)	79
SmoI	CTYRAG	1 cut(s)	79
SphI	GCATGC	1 cut(s)	150
Sse9I	AATT	2 cut(s)	102, 189
SsiI	CCGC	1 cut(s)	150
TasI	AATT	2 cut(s)	102, 189
TatI	WGTACW	1 cut(s)	97
Tru1I	TTAA	2 cut(s)	90, 232
Tru9I	TTAA	2 cut(s)	90, 232
TseI	GCWGC	1 cut(s)	35
XceI	RCATGY	1 cut(s)	150

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.