Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0017005

Physical Location & Seq

Genomic Coordinates Forward (+)

37075233 .. 37075547

Gene Structure 315 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ24700

Sequence Viewer

CDS Protein Promoter (2k)

Length: 243 bp

ATGCATTTGTTTCTCATTAGATTTATTTTTTATTTTTTATTTTTGTGGCAGAGTGGTGCTATGCAAGTGAGATTGTTAGTGATTTTTTTCTTAATGTTCGTTGACATCCTTCGTGATAGCAAGGGAAATCTTCCTCGCATGTTGAAGAATCTGGACCCATTCTTTATGTTGTTTATTTGTAATGAATGGATGAACAAATATCCCATTGTGAGATGGCACGAGATAGGTAATCTGTTCTGCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000018 GO:0000228 GO:0000280 GO:0000287 GO:0001503 GO:0001649 GO:0003674 GO:0003824 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005694 GO:0005737 GO:0006139 GO:0006163 GO:0006282 GO:0006725 GO:0006753 GO:0006793 GO:0006796 GO:0006807 GO:0006996 GO:0007049 GO:0007140 GO:0007276 GO:0008150 GO:0008152 GO:0008283 GO:0009117 GO:0009123 GO:0009126 GO:0009141 GO:0009144 GO:0009150 GO:0009161 GO:0009167 GO:0009199 GO:0009205 GO:0009259 GO:0009314 GO:0009628 GO:0009892 GO:0009987 GO:0010212 GO:0010520 GO:0010564 GO:0010569 GO:0010605 GO:0010639 GO:0010941 GO:0010948 GO:0016043 GO:0016787 GO:0017144 GO:0019219 GO:0019222 GO:0019637 GO:0019693 GO:0019953 GO:0022402 GO:0022412 GO:0022414 GO:0030154 GO:0031323 GO:0031324 GO:0031974 GO:0031981 GO:0032501 GO:0032502 GO:0032504 GO:0033043 GO:0033687 GO:0034641 GO:0040020 GO:0042981 GO:0043066 GO:0043067 GO:0043069 GO:0043167 GO:0043169 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044237 GO:0044238 GO:0044281 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044464 GO:0044703 GO:0045128 GO:0045786 GO:0045835 GO:0045910 GO:0045934 GO:0046034 GO:0046483 GO:0046872 GO:0048232 GO:0048285 GO:0048471 GO:0048519 GO:0048523 GO:0048583 GO:0048609 GO:0048869 GO:0050789 GO:0050794 GO:0050896 GO:0051052 GO:0051053 GO:0051128 GO:0051129 GO:0051171 GO:0051172 GO:0051321 GO:0051445 GO:0051447 GO:0051704 GO:0051716 GO:0051726 GO:0051783 GO:0051784 GO:0055086 GO:0060255 GO:0060548 GO:0060631 GO:0065007 GO:0070013 GO:0071214 GO:0071478 GO:0071479 GO:0071704 GO:0071840 GO:0072521 GO:0080090 GO:0080134 GO:0080135 GO:0104004 GO:0110029 GO:0140013 GO:1901135 GO:1901360 GO:1901564 GO:1903046 GO:2000241 GO:2000242 GO:2000779 GO:2001020

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AAA Vps4_C

Protein Analysis

80

Amino Acids

9.9

Weight (kDa)

9.24

Isoelectric Point (pI)

48.64

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0017005)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr5g0063531 RchiOBHm_Chr6g0275311
rosa_laevigata	RLG00000035651
rosa_roxburghii	Rroxscaffold_6G00393190 Rroxscaffold_7G00193410
rosa_rugosa	Rorug05G0358000
rosa_samantha	Rh3BG332400 Rh5AG409400 Rh5AG416700 Rh5BG422400 Rh5CG446400 Rh5DG437300 Rh6BG207600
rosa_wichuraiana	Rw5G038500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AgsI	TTSAA	1 cut(s)	145
AspS9I	GGNCC	1 cut(s)	154
AvaII	GGWCC	1 cut(s)	154
BauI	CACGAG	1 cut(s)	218
BccI	CCATC	1 cut(s)	207
BfaI	CTAG	1 cut(s)	241
Bme18I	GGWCC	1 cut(s)	154
BmgT120I	GGNCC	1 cut(s)	154
BmiI	GGNNCC	1 cut(s)	156
BseGI	GGATG	2 cut(s)	105, 195
BspLI	GGNNCC	1 cut(s)	156
BssSI	CACGAG	1 cut(s)	218
Bst2BI	CACGAG	1 cut(s)	218
BstF5I	GGATG	2 cut(s)	105, 195
BstNSI	RCATGY	1 cut(s)	142
BtsCI	GGATG	2 cut(s)	105, 195
Cfr13I	GGNCC	1 cut(s)	154
CviAII	CATG	1 cut(s)	139
Eco47I	GGWCC	1 cut(s)	154
EcoT22I	ATGCAT	1 cut(s)	6
FaeI	CATG	1 cut(s)	142
FaiI	YATR	3 cut(s)	62, 140, 167
FatI	CATG	1 cut(s)	138
FokI	GGATG	2 cut(s)	92, 202
FspBI	CTAG	1 cut(s)	241
Hin1II	CATG	1 cut(s)	142
HincII	GTYRAC	1 cut(s)	103
HindII	GTYRAC	1 cut(s)	103
HinfI	GANTC	1 cut(s)	148
Hpy166II	GTNNAC	1 cut(s)	103
Hpy188III	TCNNGA	2 cut(s)	113, 152
Hpy8I	GTNNAC	1 cut(s)	103
HpyAV	CCTTC	1 cut(s)	119
HpyCH4V	TGCA	2 cut(s)	4, 64
Hsp92II	CATG	1 cut(s)	142
LpnPI	CCDG	1 cut(s)	137
MaeI	CTAG	1 cut(s)	241
MboII	GAAGA	2 cut(s)	122, 157
MnlI	CCTC	1 cut(s)	144
Mph1103I	ATGCAT	1 cut(s)	6
MseI	TTAA	1 cut(s)	92
NlaIII	CATG	1 cut(s)	142
NlaIV	GGNNCC	1 cut(s)	156
NsiI	ATGCAT	1 cut(s)	6
NspI	RCATGY	1 cut(s)	142
PfeI	GAWTC	1 cut(s)	148
PspN4I	GGNNCC	1 cut(s)	156
PspPI	GGNCC	1 cut(s)	154
SaqAI	TTAA	1 cut(s)	92
Sau96I	GGNCC	1 cut(s)	154
SetI	ASST	1 cut(s)	229
SgeI	CNNG	8 cut(s)	77, 125, 133, 147, 151, 164, 230, 232
SinI	GGWCC	1 cut(s)	154
SspMI	CTAG	1 cut(s)	241
TfiI	GAWTC	1 cut(s)	148
Tru1I	TTAA	1 cut(s)	92
Tru9I	TTAA	1 cut(s)	92
TspDTI	ATGAA	2 cut(s)	198, 206
VpaK11BI	GGWCC	1 cut(s)	154
XceI	RCATGY	1 cut(s)	142
XspI	CTAG	1 cut(s)	241
Zsp2I	ATGCAT	1 cut(s)	6

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.