Rh6BG207600

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6B
OG0017005
Physical Location & Seq
Forward (+)
39071903 .. 39088551
16649 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6BG207600.1

Sequence Viewer

Length: 645 bp
ATGGACATTTGGGTGGAAAGAGAAATGAAAACATTGACGAATGAAGCAGACTTTAATGACGTCAACATCCTTCATGATAGCAAGGGGAATCTTCCTCGCATGTTGAAGAATCTGGACTCATTCTTTCTGCTGTTTATTTGTAATGACTGGATGAACAAATATCTCATTGTGAGATGGCACGAGATATGTAATCTGTTCTGCCAGTTGTTCTATGTTGTTTGTGATGCGACAGCTATGATGCTGATGATGTTGTTGTGTTTTATTAGTGGAGCTTTGTGGACCGAAAGATGTCGTGGGGGATATGTCCCTGTGACATCTTTTGCAACCAAAACTCTATCTCTTTCTTCAAGTTGTCGGTGCCCTCAATCTAATCTATTGCTGTTTGGTCCGAATGTGGAGAAAGACTGGATTAAAAGTGTTGAAGAGTTTAAGACTCCGCTACGCAAGTGTAAGATGTCCCGGATGAGTTTGCATATTGGTGGCTCGTTCATATGGCCAAAAAATTTGGTACAAGCGCAGCTGAAGCAGGGGTGTGGCATGAGCATTTGCGGTCTGGGATCAGTGCACTTTAGAGGAGGAGCAACTTCCTTGCATCGCAGTTCCCAAGGATTGGGTGAACAGCTGAGGTGGATTATCTTCCGCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

214

Amino Acids

24.55

Weight (kDa)

8.9

Isoelectric Point (pI)

50.31

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 63
AccB1I GGYRCC 1 cut(s) 357
AccB7I CCANNNNNTGG 1 cut(s) 610
AciI CCGC 3 cut(s) 437, 549, 640
AclWI GGATC 1 cut(s) 565
AcoI YGGCCR 1 cut(s) 494
AcsI RAATTY 1 cut(s) 502
AcuI CTGAAG 1 cut(s) 542
AcyI GRCGYC 1 cut(s) 60
AfaI GTAC 1 cut(s) 510
AfiI CCNNNNNNNGG 1 cut(s) 610
AgsI TTSAA 3 cut(s) 106, 348, 422
AluBI AGCT 4 cut(s) 233, 272, 520, 622
AluI AGCT 4 cut(s) 233, 272, 520, 622
Alw21I GWGCWC 1 cut(s) 567
Alw44I GTGCAC 1 cut(s) 563
AlwI GGATC 1 cut(s) 565
AoxI GGCC 1 cut(s) 494
ApaLI GTGCAC 1 cut(s) 563
ApeKI GCWGC 1 cut(s) 517
ApoI RAATTY 1 cut(s) 502
AspLEI GCGC 1 cut(s) 517
AspS9I GGNCC 2 cut(s) 279, 386
AsuC2I CCSGG 1 cut(s) 460
AsuHPI GGTGA 1 cut(s) 626
AvaII GGWCC 2 cut(s) 279, 386
BaeGI GKGCMC 2 cut(s) 362, 567
BalI TGGCCA 1 cut(s) 496
BanI GGYRCC 1 cut(s) 357
BauI CACGAG 1 cut(s) 179
Bbv12I GWGCWC 1 cut(s) 567
BbvCI CCTCAGC 1 cut(s) 623
BbvI GCAGC 1 cut(s) 529
BccI CCATC 1 cut(s) 168
BcnI CCSGG 1 cut(s) 460
BfaI CTAG 1 cut(s) 643
BisI GCNGC 1 cut(s) 518
BlsI GCNGC 1 cut(s) 519
Bme1390I CCNGG 1 cut(s) 460
Bme18I GGWCC 2 cut(s) 279, 386
BmgT120I GGNCC 2 cut(s) 279, 386
BmiI GGNNCC 1 cut(s) 359
BmrFI CCNGG 1 cut(s) 460
BmsI GCATC 3 cut(s) 214, 228, 601
Bpu10I CCTNAGC 1 cut(s) 623
BpuMI CCSGG 1 cut(s) 460
BsaHI GRCGYC 1 cut(s) 60
BsaJI CCNNGG 1 cut(s) 604
Bsc4I CCNNNNNNNGG 1 cut(s) 610
Bse1I ACTGG 3 cut(s) 152, 202, 410
BseDI CCNNGG 1 cut(s) 604
BseGI GGATG 3 cut(s) 66, 156, 468
BseLI CCNNNNNNNGG 1 cut(s) 610
BseMII CTCAG 1 cut(s) 614
BseNI ACTGG 3 cut(s) 152, 202, 410
BseRI GAGGAG 2 cut(s) 588, 591
BseSI GKGCMC 2 cut(s) 362, 567
BseXI GCAGC 1 cut(s) 529
BshFI GGCC 1 cut(s) 496
BshNI GGYRCC 1 cut(s) 357
BsiHKAI GWGCWC 1 cut(s) 567
BsiSI CCGG 1 cut(s) 460
BslFI GGGAC 2 cut(s) 290, 442
BslI CCNNNNNNNGG 1 cut(s) 610
BsmFI GGGAC 2 cut(s) 290, 442
BsnI GGCC 1 cut(s) 496
Bsp1286I GDGCHC 2 cut(s) 362, 567
Bsp143I GATC 1 cut(s) 557
BspACI CCGC 3 cut(s) 437, 549, 640
BspANI GGCC 1 cut(s) 496
BspCNI CTCAG 1 cut(s) 615
BspHI TCATGA 1 cut(s) 73
BspLI GGNNCC 1 cut(s) 359
BspPI GGATC 1 cut(s) 565
BspT107I GGYRCC 1 cut(s) 357
BsrI ACTGG 3 cut(s) 152, 202, 410
BssECI CCNNGG 1 cut(s) 604
BssMI GATC 1 cut(s) 557
BssNI GRCGYC 1 cut(s) 60
BssSI CACGAG 1 cut(s) 179
BssT1I CCWWGG 1 cut(s) 604
Bst2BI CACGAG 1 cut(s) 179
Bst6I CTCTTC 1 cut(s) 417
BstACI GRCGYC 1 cut(s) 60
BstDEI CTNAG 1 cut(s) 623
BstF5I GGATG 3 cut(s) 66, 156, 468
BstHHI GCGC 1 cut(s) 517
BstKTI GATC 1 cut(s) 560
BstMBI GATC 1 cut(s) 557
BstMWI GCNNNNNNNGC 1 cut(s) 523
BstNSI RCATGY 1 cut(s) 103
BstSCI CCNGG 1 cut(s) 458
BstSLI GKGCMC 2 cut(s) 362, 567
BstV1I GCAGC 1 cut(s) 529
BsuRI GGCC 1 cut(s) 496
BtgZI GCGATG 1 cut(s) 578
BtsCI GGATG 3 cut(s) 66, 156, 468
BtsIMutI CAGTG 1 cut(s) 567
CciI TCATGA 1 cut(s) 73
CfoI GCGC 1 cut(s) 517
Cfr13I GGNCC 2 cut(s) 279, 386
Csp6I GTAC 1 cut(s) 509
CviAII CATG 3 cut(s) 74, 100, 538
CviJI RGCY 6 cut(s) 233, 272, 483, 496, 520, 622
CviKI_1 RGCY 6 cut(s) 233, 272, 483, 496, 520, 622
CviQI GTAC 1 cut(s) 509
DdeI CTNAG 1 cut(s) 623
DpnI GATC 1 cut(s) 559
DpnII GATC 1 cut(s) 557
EaeI YGGCCR 1 cut(s) 494
Eam1104I CTCTTC 1 cut(s) 417
EarI CTCTTC 1 cut(s) 417
Eco130I CCWWGG 1 cut(s) 604
Eco47I GGWCC 2 cut(s) 279, 386
Eco57I CTGAAG 1 cut(s) 542
EcoT14I CCWWGG 1 cut(s) 604
ErhI CCWWGG 1 cut(s) 604
FaeI CATG 3 cut(s) 77, 103, 541
FaqI GGGAC 2 cut(s) 290, 442
FatI CATG 3 cut(s) 73, 99, 537
FauNDI CATATG 1 cut(s) 491
Fnu4HI GCNGC 1 cut(s) 518
FokI GGATG 3 cut(s) 53, 163, 475
Fsp4HI GCNGC 1 cut(s) 518
FspBI CTAG 1 cut(s) 643
GlaI GCGC 1 cut(s) 516
GluI GCNGC 1 cut(s) 518
HaeIII GGCC 1 cut(s) 496
HapII CCGG 1 cut(s) 460
HhaI GCGC 1 cut(s) 517
Hin1I GRCGYC 1 cut(s) 60
Hin1II CATG 3 cut(s) 77, 103, 541
Hin6I GCGC 1 cut(s) 515
HinP1I GCGC 1 cut(s) 515
HincII GTYRAC 1 cut(s) 64
HindII GTYRAC 1 cut(s) 64
HinfI GANTC 4 cut(s) 88, 109, 116, 433
HpaII CCGG 1 cut(s) 460
HphI GGTGA 1 cut(s) 626
Hpy166II GTNNAC 4 cut(s) 64, 279, 565, 617
Hpy188I TCNGA 1 cut(s) 390
Hpy188III TCNNGA 2 cut(s) 74, 113
Hpy8I GTNNAC 4 cut(s) 64, 279, 565, 617
HpyAV CCTTC 1 cut(s) 80
HpyCH4IV ACGT 1 cut(s) 60
HpyCH4V TGCA 4 cut(s) 323, 472, 565, 592
HpyF10VI GCNNNNNNNGC 1 cut(s) 523
HpyF3I CTNAG 1 cut(s) 623
HpySE526I ACGT 1 cut(s) 60
Hsp92I GRCGYC 1 cut(s) 60
Hsp92II CATG 3 cut(s) 77, 103, 541
HspAI GCGC 1 cut(s) 515
Kzo9I GATC 1 cut(s) 557
LmnI GCTCC 2 cut(s) 269, 578
LpnPI CCDG 8 cut(s) 98, 133, 215, 321, 391, 473, 512, 539
Lsp1109I GCAGC 1 cut(s) 529
LweI GCATC 3 cut(s) 214, 228, 601
MaeI CTAG 1 cut(s) 643
MaeII ACGT 1 cut(s) 60
MaeIII GTNAC 1 cut(s) 310
MalI GATC 1 cut(s) 559
MboI GATC 1 cut(s) 557
MboII GAAGA 5 cut(s) 83, 118, 336, 434, 628
MhlI GDGCHC 2 cut(s) 362, 567
MlsI TGGCCA 1 cut(s) 496
MluCI AATT 1 cut(s) 502
MluNI TGGCCA 1 cut(s) 496
MlyI GAGTC 2 cut(s) 110, 427
MnlI CCTC 5 cut(s) 105, 372, 566, 569, 618
Mox20I TGGCCA 1 cut(s) 496
MscI TGGCCA 1 cut(s) 496
MseI TTAA 3 cut(s) 54, 411, 429
MslI CAYNNNNRTG 2 cut(s) 11, 477
Msp20I TGGCCA 1 cut(s) 496
MspA1I CMGCKG 2 cut(s) 520, 622
MspI CCGG 1 cut(s) 460
MspR9I CCNGG 1 cut(s) 460
MwoI GCNNNNNNNGC 1 cut(s) 523
NciI CCSGG 1 cut(s) 460
NdeI CATATG 1 cut(s) 491
NdeII GATC 1 cut(s) 557
NlaIII CATG 3 cut(s) 77, 103, 541
NlaIV GGNNCC 1 cut(s) 359
NmuCI GTSAC 1 cut(s) 310
NspI RCATGY 1 cut(s) 103
PagI TCATGA 1 cut(s) 73
PfeI GAWTC 2 cut(s) 88, 109
PflMI CCANNNNNTGG 1 cut(s) 610
PfoI TCCNGGA 1 cut(s) 458
PkrI GCNGC 1 cut(s) 519
PleI GAGTC 2 cut(s) 110, 427
PpsI GAGTC 2 cut(s) 110, 427
PspN4I GGNNCC 1 cut(s) 359
PspPI GGNCC 2 cut(s) 279, 386
PvuII CAGCTG 2 cut(s) 520, 622
RsaI GTAC 1 cut(s) 510
RsaNI GTAC 1 cut(s) 509
RseI CAYNNNNRTG 2 cut(s) 11, 477
SaqAI TTAA 3 cut(s) 54, 411, 429
SatI GCNGC 1 cut(s) 518
Sau3AI GATC 1 cut(s) 557
Sau96I GGNCC 2 cut(s) 279, 386
SchI GAGTC 2 cut(s) 110, 427
ScrFI CCNGG 1 cut(s) 460
SduI GDGCHC 2 cut(s) 362, 567
SetI ASST 6 cut(s) 63, 235, 274, 522, 624, 629
SfaNI GCATC 3 cut(s) 214, 228, 601
SinI GGWCC 2 cut(s) 279, 386
SmiMI CAYNNNNRTG 2 cut(s) 11, 477
Sse9I AATT 1 cut(s) 502
SsiI CCGC 3 cut(s) 437, 549, 640
SspMI CTAG 1 cut(s) 643
StyD4I CCNGG 1 cut(s) 458
StyI CCWWGG 1 cut(s) 604
TaiI ACGT 1 cut(s) 63
TaqII GACCGA 1 cut(s) 296
TasI AATT 1 cut(s) 502
TfiI GAWTC 2 cut(s) 88, 109
Tru1I TTAA 3 cut(s) 54, 411, 429
Tru9I TTAA 3 cut(s) 54, 411, 429
TscAI CASTG 1 cut(s) 567
TseFI GTSAC 1 cut(s) 310
TseI GCWGC 1 cut(s) 517
Tsp45I GTSAC 1 cut(s) 310
TspDTI ATGAA 5 cut(s) 41, 57, 62, 167, 478
TspRI CASTG 1 cut(s) 567
Van91I CCANNNNNTGG 1 cut(s) 610
VneI GTGCAC 1 cut(s) 563
VpaK11BI GGWCC 2 cut(s) 279, 386
XapI RAATTY 1 cut(s) 502
XceI RCATGY 1 cut(s) 103
XspI CTAG 1 cut(s) 643
ZraI GACGTC 1 cut(s) 61
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.