Rh3BG332400

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3B
OG0017005
Physical Location & Seq
Forward (+)
35038413 .. 35039634
1222 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3BG332400.1

Sequence Viewer

Length: 450 bp
ATGAAAATTCATCCTCACTTACGAACTACGCGCGATTCTGTCAAGTTTGTTCTCAATGCTATGACAATGATGCTGTATTGTAAGGATGGTTATCTAGTTACGCAGCATGGGCTTAGTCAAATAATGGTTTATGAGTGGTTTACTGCTTTTGATAATTTTCATAAGACGAAGATTAATGTGCAGTACCTTATAAGTAGCCTCCCTAAATACCATTTGCGGTCCTCTTTACAGTGGGGGTTGAATTTTTTCTTAAATAAATCTAGATTGGTTCATCTATTGCGTCAAAATTCACCAGTCAGAATCTCAAAGGCTTCACACGTGCATGTATCCTTCCAAGAGGAAGTGGAAGCCATAGCTGCAATACAGGGCACTGATGGGCAGTGGATTGATGGTCGCGTACTTTCCGTAAGGGCCATTTCAGATGAATTGAGTGGTGCTATGCAACGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

149

Amino Acids

17.22

Weight (kDa)

9.67

Isoelectric Point (pI)

30.24

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 191
AccII CGCG 3 cut(s) 31, 33, 396
AciI CCGC 1 cut(s) 217
AclI AACGTT 1 cut(s) 445
AcsI RAATTY 3 cut(s) 6, 241, 286
AcvI CACGTG 1 cut(s) 319
AfaI GTAC 2 cut(s) 185, 399
AflIII ACRYGT 1 cut(s) 316
AgsI TTSAA 1 cut(s) 241
AluBI AGCT 1 cut(s) 356
AluI AGCT 1 cut(s) 356
AoxI GGCC 1 cut(s) 411
ApeKI GCWGC 2 cut(s) 103, 356
ApoI RAATTY 3 cut(s) 6, 241, 286
AseI ATTAAT 1 cut(s) 174
Asp700I GAANNNNTTC 1 cut(s) 245
AspLEI GCGC 1 cut(s) 33
AspS9I GGNCC 2 cut(s) 219, 411
AsuHPI GGTGA 1 cut(s) 282
AvaII GGWCC 1 cut(s) 219
BaeGI GKGCMC 1 cut(s) 371
BbrPI CACGTG 1 cut(s) 319
BbvI GCAGC 2 cut(s) 115, 343
BccI CCATC 3 cut(s) 80, 368, 383
BciVI GTATCC 1 cut(s) 337
BfaI CTAG 2 cut(s) 95, 261
BfuI GTATCC 1 cut(s) 337
BisI GCNGC 2 cut(s) 104, 357
BlsI GCNGC 2 cut(s) 105, 358
Bme18I GGWCC 1 cut(s) 219
BmgT120I GGNCC 2 cut(s) 219, 411
BmsI GCATC 1 cut(s) 60
BsaAI YACGTR 1 cut(s) 319
BsaBI GATNNNNATC 1 cut(s) 90
Bse1I ACTGG 1 cut(s) 293
Bse8I GATNNNNATC 1 cut(s) 90
BseGI GGATG 2 cut(s) 10, 91
BseJI GATNNNNATC 1 cut(s) 90
BseNI ACTGG 1 cut(s) 293
BseSI GKGCMC 1 cut(s) 371
BseXI GCAGC 2 cut(s) 115, 343
BsgI GTGCAG 1 cut(s) 200
Bsh1236I CGCG 3 cut(s) 31, 33, 396
BshFI GGCC 1 cut(s) 413
BsnI GGCC 1 cut(s) 413
Bsp1286I GDGCHC 1 cut(s) 371
BspACI CCGC 1 cut(s) 217
BspANI GGCC 1 cut(s) 413
BspFNI CGCG 3 cut(s) 31, 33, 396
BsrI ACTGG 1 cut(s) 293
Bst4CI ACNGT 1 cut(s) 231
BstBAI YACGTR 1 cut(s) 319
BstDEI CTNAG 1 cut(s) 113
BstF5I GGATG 2 cut(s) 10, 91
BstFNI CGCG 3 cut(s) 31, 33, 396
BstHHI GCGC 1 cut(s) 33
BstMWI GCNNNNNNNGC 2 cut(s) 109, 356
BstNSI RCATGY 1 cut(s) 326
BstSLI GKGCMC 1 cut(s) 371
BstUI CGCG 3 cut(s) 31, 33, 396
BstV1I GCAGC 2 cut(s) 115, 343
BsuI GTATCC 1 cut(s) 337
BsuRI GGCC 1 cut(s) 413
BtsCI GGATG 2 cut(s) 10, 91
BtsI GCAGTG 1 cut(s) 386
BtsIMutI CAGTG 3 cut(s) 236, 369, 386
CfoI GCGC 1 cut(s) 33
Cfr13I GGNCC 2 cut(s) 219, 411
CseI GACGC 1 cut(s) 269
Csp6I GTAC 2 cut(s) 184, 398
CviAII CATG 2 cut(s) 107, 323
CviJI RGCY 6 cut(s) 112, 198, 311, 350, 356, 413
CviKI_1 RGCY 6 cut(s) 112, 198, 311, 350, 356, 413
CviQI GTAC 2 cut(s) 184, 398
DdeI CTNAG 1 cut(s) 113
Eco47I GGWCC 1 cut(s) 219
Eco72I CACGTG 1 cut(s) 319
FaeI CATG 2 cut(s) 110, 326
FaiI YATR 8 cut(s) 62, 108, 132, 162, 191, 324, 353, 440
FatI CATG 2 cut(s) 106, 322
Fnu4HI GCNGC 2 cut(s) 104, 357
FokI GGATG 1 cut(s) 98
Fsp4HI GCNGC 2 cut(s) 104, 357
FspBI CTAG 2 cut(s) 95, 261
GlaI GCGC 1 cut(s) 32
GluI GCNGC 2 cut(s) 104, 357
HaeIII GGCC 1 cut(s) 413
HgaI GACGC 1 cut(s) 269
HhaI GCGC 1 cut(s) 33
Hin1II CATG 2 cut(s) 110, 326
Hin6I GCGC 1 cut(s) 31
HinP1I GCGC 1 cut(s) 31
HinfI GANTC 2 cut(s) 35, 300
HphI GGTGA 1 cut(s) 282
Hpy166II GTNNAC 1 cut(s) 141
Hpy188I TCNGA 2 cut(s) 299, 421
Hpy188III TCNNGA 1 cut(s) 261
Hpy8I GTNNAC 1 cut(s) 141
HpyAV CCTTC 1 cut(s) 340
HpyCH4III ACNGT 1 cut(s) 231
HpyCH4IV ACGT 2 cut(s) 318, 445
HpyCH4V TGCA 4 cut(s) 181, 322, 359, 442
HpyF10VI GCNNNNNNNGC 2 cut(s) 109, 356
HpyF3I CTNAG 1 cut(s) 113
HpySE526I ACGT 2 cut(s) 318, 445
Hsp92II CATG 2 cut(s) 110, 326
HspAI GCGC 1 cut(s) 31
LpnPI CCDG 2 cut(s) 306, 350
Lsp1109I GCAGC 2 cut(s) 115, 343
LweI GCATC 1 cut(s) 60
MaeI CTAG 2 cut(s) 95, 261
MaeII ACGT 2 cut(s) 318, 445
MaeIII GTNAC 1 cut(s) 97
MboII GAAGA 1 cut(s) 181
MhlI GDGCHC 1 cut(s) 371
MluCI AATT 5 cut(s) 6, 154, 241, 286, 425
MnlI CCTC 4 cut(s) 24, 209, 232, 331
MroXI GAANNNNTTC 1 cut(s) 245
MseI TTAA 2 cut(s) 174, 251
MslI CAYNNNNRTG 1 cut(s) 321
MvnI CGCG 3 cut(s) 31, 33, 396
MwoI GCNNNNNNNGC 2 cut(s) 109, 356
NlaIII CATG 2 cut(s) 110, 326
NspI RCATGY 1 cut(s) 326
PdmI GAANNNNTTC 1 cut(s) 245
PfeI GAWTC 2 cut(s) 35, 300
PkrI GCNGC 2 cut(s) 105, 358
PmaCI CACGTG 1 cut(s) 319
PmlI CACGTG 1 cut(s) 319
Ppu21I YACGTR 1 cut(s) 319
PshBI ATTAAT 1 cut(s) 174
PsiI TTATAA 1 cut(s) 191
Psp1406I AACGTT 1 cut(s) 445
PspCI CACGTG 1 cut(s) 319
PspPI GGNCC 2 cut(s) 219, 411
RsaI GTAC 2 cut(s) 185, 399
RsaNI GTAC 2 cut(s) 184, 398
RseI CAYNNNNRTG 1 cut(s) 321
SaqAI TTAA 2 cut(s) 174, 251
SatI GCNGC 2 cut(s) 104, 357
Sau96I GGNCC 2 cut(s) 219, 411
SduI GDGCHC 1 cut(s) 371
SetI ASST 4 cut(s) 189, 321, 358, 448
SfaNI GCATC 1 cut(s) 60
SinI GGWCC 1 cut(s) 219
SmiMI CAYNNNNRTG 1 cut(s) 321
Sse9I AATT 5 cut(s) 6, 154, 241, 286, 425
SsiI CCGC 1 cut(s) 217
SspMI CTAG 2 cut(s) 95, 261
TaaI ACNGT 1 cut(s) 231
TaiI ACGT 2 cut(s) 321, 448
TasI AATT 5 cut(s) 6, 154, 241, 286, 425
TfiI GAWTC 2 cut(s) 35, 300
Tru1I TTAA 2 cut(s) 174, 251
Tru9I TTAA 2 cut(s) 174, 251
TscAI CASTG 3 cut(s) 236, 376, 386
TseI GCWGC 2 cut(s) 103, 356
TspDTI ATGAA 4 cut(s) 17, 149, 260, 438
TspGWI ACGGA 1 cut(s) 394
TspRI CASTG 3 cut(s) 236, 376, 386
VpaK11BI GGWCC 1 cut(s) 219
VspI ATTAAT 1 cut(s) 174
XapI RAATTY 3 cut(s) 6, 241, 286
XbaI TCTAGA 1 cut(s) 260
XceI RCATGY 1 cut(s) 326
XmnI GAANNNNTTC 1 cut(s) 245
XspI CTAG 2 cut(s) 95, 261
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.