Rh5BG422400

Belongs to the AAA ATPase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5B
OG0017005
Physical Location & Seq
Forward (+)
68231056 .. 68238308
7253 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5BG422400.1

Sequence Viewer

Length: 582 bp
ATGAGCGATAGCGAAAGATCTACTGATGTGAACCTGGTATGGGTTCTAGGTGGTGATGAGAAGACGAGATTTCAGCTATGGAGAAGGGATTTTGTGTTTGCGTTGATGTTGTGTTCAAGTACTAGACCGGAAGTGCTTTCCCAGGAAGTGTTAAACGAGTTTCGGAATAGGTTATATCTACCCTTACCCTCATTCAAAGCTAGGTGGTCCATTATCGAGGGATTTTTGGAGAGAGAAGGACTGTTTTGCCTGTCATGGTCTGACTTGCATGATATTTGCCACAGGACTGCAGGTTACTCTGGTACAGAATTAGAGGCGGTAGTCAAGCATGCGGTATCTCTCGGTCCATTGTCGAATTTTGATTCAAAATTTTCCTATCACCATTTTTTGGCTCAGGAAACGTTGCTTGCGATGCTGCCGCCATTGACTACAGAGGATTTTCGCAGAGCTACGTCACTTCTGGCGCCATCTGTTTTGGCAGATGATGTCTCGGCTTATGAGGTTTGGGATAAGAAAAATGGCTCTGGAACTGTGAGGAAGAGGAATAGCCGAACAAGGCCGAGTATGAGGAGAAATGTTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000003 GO:0000018 GO:0000228 GO:0000280 GO:0000287 GO:0001503 GO:0001649 GO:0003674 GO:0003824 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005694 GO:0005737 GO:0006139 GO:0006163 GO:0006282 GO:0006725 GO:0006753 GO:0006793 GO:0006796 GO:0006807 GO:0006996 GO:0007049 GO:0007140 GO:0007276 GO:0008150 GO:0008152 GO:0008283 GO:0009117 GO:0009123 GO:0009126 GO:0009141 GO:0009144 GO:0009150 GO:0009161 GO:0009167 GO:0009199 GO:0009205 GO:0009259 GO:0009314 GO:0009628 GO:0009892 GO:0009987 GO:0010212 GO:0010520 GO:0010564 GO:0010569 GO:0010605 GO:0010639 GO:0010941 GO:0010948 GO:0016043 GO:0016787 GO:0017144 GO:0019219 GO:0019222 GO:0019637 GO:0019693 GO:0019953 GO:0022402 GO:0022412 GO:0022414 GO:0030154 GO:0031323 GO:0031324 GO:0031974 GO:0031981 GO:0032501 GO:0032502 GO:0032504 GO:0033043 GO:0033687 GO:0034641 GO:0040020 GO:0042981 GO:0043066 GO:0043067 GO:0043069 GO:0043167 GO:0043169 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044237 GO:0044238 GO:0044281 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044464 GO:0044703 GO:0045128 GO:0045786 GO:0045835 GO:0045910 GO:0045934 GO:0046034 GO:0046483 GO:0046872 GO:0048232 GO:0048285 GO:0048471 GO:0048519 GO:0048523 GO:0048583 GO:0048609 GO:0048869 GO:0050789 GO:0050794 GO:0050896 GO:0051052 GO:0051053 GO:0051128 GO:0051129 GO:0051171 GO:0051172 GO:0051321 GO:0051445 GO:0051447 GO:0051704 GO:0051716 GO:0051726 GO:0051783 GO:0051784 GO:0055086 GO:0060255 GO:0060548 GO:0060631 GO:0065007 GO:0070013 GO:0071214 GO:0071478 GO:0071479 GO:0071704 GO:0071840 GO:0072521 GO:0080090 GO:0080134 GO:0080135 GO:0104004 GO:0110029 GO:0140013 GO:1901135 GO:1901360 GO:1901564 GO:1903046 GO:2000241 GO:2000242 GO:2000779 GO:2001020
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
AAA Vps4_C

Protein Analysis

193

Amino Acids

22.15

Weight (kDa)

7.77

Isoelectric Point (pI)

52.72

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 281
AccB1I GGYRCC 1 cut(s) 463
AccB7I CCANNNNNTGG 1 cut(s) 388
AciI CCGC 3 cut(s) 317, 332, 419
AclI AACGTT 1 cut(s) 401
AcsI RAATTY 2 cut(s) 355, 368
AcyI GRCGYC 1 cut(s) 464
AfaI GTAC 2 cut(s) 121, 304
AfiI CCNNNNNNNGG 2 cut(s) 40, 388
AgsI TTSAA 3 cut(s) 117, 196, 366
AjnI CCWGG 2 cut(s) 33, 141
AluBI AGCT 3 cut(s) 76, 200, 449
AluI AGCT 3 cut(s) 76, 200, 449
Alw26I GTCTC 1 cut(s) 493
AoxI GGCC 1 cut(s) 557
ApeKI GCWGC 1 cut(s) 415
ApoI RAATTY 2 cut(s) 355, 368
AspLEI GCGC 1 cut(s) 466
AspS9I GGNCC 2 cut(s) 207, 344
AsuHPI GGTGA 2 cut(s) 65, 371
AvaII GGWCC 2 cut(s) 207, 344
BanI GGYRCC 1 cut(s) 463
BbsI GAAGAC 1 cut(s) 68
BbvI GCAGC 1 cut(s) 402
BccI CCATC 1 cut(s) 475
BciT130I CCWGG 2 cut(s) 35, 143
BcoDI GTCTC 1 cut(s) 493
BfaI CTAG 3 cut(s) 47, 123, 201
BfmI CTRYAG 2 cut(s) 288, 429
BfoI RGCGCY 1 cut(s) 467
BfuAI ACCTGC 1 cut(s) 281
BglII AGATCT 1 cut(s) 17
BisI GCNGC 2 cut(s) 416, 419
BlsI GCNGC 2 cut(s) 417, 420
BmcAI AGTACT 1 cut(s) 121
Bme1390I CCNGG 2 cut(s) 35, 143
Bme18I GGWCC 2 cut(s) 207, 344
BmgT120I GGNCC 2 cut(s) 207, 344
BmiI GGNNCC 1 cut(s) 465
BmrFI CCNGG 2 cut(s) 35, 143
BmsI GCATC 1 cut(s) 402
BpiI GAAGAC 1 cut(s) 68
Bpu10I CCTNAGC 1 cut(s) 393
BsaHI GRCGYC 1 cut(s) 464
BsaJI CCNNGG 1 cut(s) 141
BsaWI WCCGGW 1 cut(s) 127
Bsc4I CCNNNNNNNGG 2 cut(s) 40, 388
BseBI CCWGG 2 cut(s) 35, 143
BseDI CCNNGG 1 cut(s) 141
BseLI CCNNNNNNNGG 2 cut(s) 40, 388
BseMII CTCAG 1 cut(s) 407
BseXI GCAGC 1 cut(s) 402
BshFI GGCC 1 cut(s) 559
BshNI GGYRCC 1 cut(s) 463
BsiSI CCGG 1 cut(s) 128
BslI CCNNNNNNNGG 2 cut(s) 40, 388
BsmAI GTCTC 1 cut(s) 493
BsnI GGCC 1 cut(s) 559
Bsp143I GATC 1 cut(s) 17
BspACI CCGC 3 cut(s) 317, 332, 419
BspANI GGCC 1 cut(s) 559
BspCNI CTCAG 1 cut(s) 406
BspLI GGNNCC 1 cut(s) 465
BspMAI CTGCAG 1 cut(s) 292
BspMI ACCTGC 1 cut(s) 281
BspT107I GGYRCC 1 cut(s) 463
BssECI CCNNGG 1 cut(s) 141
BssMI GATC 1 cut(s) 17
BssNI GRCGYC 1 cut(s) 464
Bst2UI CCWGG 2 cut(s) 35, 143
Bst4CI ACNGT 2 cut(s) 243, 532
Bst6I CTCTTC 1 cut(s) 533
BstACI GRCGYC 1 cut(s) 464
BstC8I GCNNGC 2 cut(s) 330, 408
BstDEI CTNAG 1 cut(s) 393
BstH2I RGCGCY 1 cut(s) 467
BstHHI GCGC 1 cut(s) 466
BstKTI GATC 1 cut(s) 20
BstMAI GTCTC 1 cut(s) 493
BstMBI GATC 1 cut(s) 17
BstMWI GCNNNNNNNGC 1 cut(s) 412
BstNI CCWGG 2 cut(s) 35, 143
BstNSI RCATGY 1 cut(s) 332
BstSCI CCNGG 2 cut(s) 33, 141
BstSFI CTRYAG 2 cut(s) 288, 429
BstV1I GCAGC 1 cut(s) 402
BstV2I GAAGAC 1 cut(s) 68
BstX2I RGATCY 1 cut(s) 17
BstYI RGATCY 1 cut(s) 17
BsuRI GGCC 1 cut(s) 559
BtgZI GCGATG 1 cut(s) 425
BveI ACCTGC 1 cut(s) 281
Cac8I GCNNGC 2 cut(s) 330, 408
CfoI GCGC 1 cut(s) 466
Cfr13I GGNCC 2 cut(s) 207, 344
CsiI ACCWGGT 1 cut(s) 33
Csp6I GTAC 2 cut(s) 120, 303
CviAII CATG 3 cut(s) 255, 269, 329
CviJI RGCY 8 cut(s) 76, 200, 392, 449, 494, 522, 549, 559
CviKI_1 RGCY 8 cut(s) 76, 200, 392, 449, 494, 522, 549, 559
CviQI GTAC 2 cut(s) 120, 303
DdeI CTNAG 1 cut(s) 393
DinI GGCGCC 1 cut(s) 465
DpnI GATC 1 cut(s) 19
DpnII GATC 1 cut(s) 17
Eam1104I CTCTTC 1 cut(s) 533
EarI CTCTTC 1 cut(s) 533
Eco47I GGWCC 2 cut(s) 207, 344
EcoRII CCWGG 2 cut(s) 33, 141
EgeI GGCGCC 1 cut(s) 465
EheI GGCGCC 1 cut(s) 465
FaeI CATG 3 cut(s) 258, 272, 332
FaiI YATR 8 cut(s) 40, 79, 175, 256, 270, 330, 498, 566
FatI CATG 3 cut(s) 254, 268, 328
Fnu4HI GCNGC 2 cut(s) 416, 419
Fsp4HI GCNGC 2 cut(s) 416, 419
FspBI CTAG 3 cut(s) 47, 123, 201
GlaI GCGC 1 cut(s) 465
GluI GCNGC 2 cut(s) 416, 419
HaeII RGCGCY 1 cut(s) 467
HaeIII GGCC 1 cut(s) 559
HapII CCGG 1 cut(s) 128
HhaI GCGC 1 cut(s) 466
Hin1I GRCGYC 1 cut(s) 464
Hin1II CATG 3 cut(s) 258, 272, 332
Hin6I GCGC 1 cut(s) 464
HinP1I GCGC 1 cut(s) 464
HinfI GANTC 1 cut(s) 362
HpaII CCGG 1 cut(s) 128
HphI GGTGA 2 cut(s) 65, 371
Hpy166II GTNNAC 1 cut(s) 31
Hpy188I TCNGA 2 cut(s) 165, 262
Hpy188III TCNNGA 2 cut(s) 395, 525
Hpy8I GTNNAC 1 cut(s) 31
HpyAV CCTTC 2 cut(s) 78, 230
HpyCH4III ACNGT 2 cut(s) 243, 532
HpyCH4IV ACGT 2 cut(s) 401, 452
HpyCH4V TGCA 2 cut(s) 268, 290
HpyF10VI GCNNNNNNNGC 1 cut(s) 412
HpyF3I CTNAG 1 cut(s) 393
HpySE526I ACGT 2 cut(s) 401, 452
Hsp92I GRCGYC 1 cut(s) 464
Hsp92II CATG 3 cut(s) 258, 272, 332
HspAI GCGC 1 cut(s) 464
KasI GGCGCC 1 cut(s) 463
Kzo9I GATC 1 cut(s) 17
Lsp1109I GCAGC 1 cut(s) 402
LweI GCATC 1 cut(s) 402
MabI ACCWGGT 1 cut(s) 33
MaeI CTAG 3 cut(s) 47, 123, 201
MaeII ACGT 2 cut(s) 401, 452
MaeIII GTNAC 2 cut(s) 293, 453
MalI GATC 1 cut(s) 19
MboI GATC 1 cut(s) 17
MboII GAAGA 2 cut(s) 73, 550
MflI RGATCY 1 cut(s) 17
MluCI AATT 3 cut(s) 308, 355, 368
Mly113I GGCGCC 1 cut(s) 464
MnlI CCTC 8 cut(s) 199, 211, 307, 427, 493, 528, 534, 561
MseI TTAA 1 cut(s) 152
MspI CCGG 1 cut(s) 128
MspR9I CCNGG 2 cut(s) 35, 143
MvaI CCWGG 2 cut(s) 35, 143
MwoI GCNNNNNNNGC 1 cut(s) 412
NarI GGCGCC 1 cut(s) 464
NdeII GATC 1 cut(s) 17
NlaIII CATG 3 cut(s) 258, 272, 332
NlaIV GGNNCC 1 cut(s) 465
NmeAIII GCCGAG 1 cut(s) 470
NmuCI GTSAC 1 cut(s) 453
NspI RCATGY 1 cut(s) 332
PaeI GCATGC 1 cut(s) 332
PcsI WCGNNNNNNNCGW 1 cut(s) 407
PfeI GAWTC 1 cut(s) 362
PflMI CCANNNNNTGG 1 cut(s) 388
PkrI GCNGC 2 cut(s) 417, 420
PluTI GGCGCC 1 cut(s) 467
Psp1406I AACGTT 1 cut(s) 401
Psp6I CCWGG 2 cut(s) 33, 141
PspGI CCWGG 2 cut(s) 33, 141
PspN4I GGNNCC 1 cut(s) 465
PspPI GGNCC 2 cut(s) 207, 344
PstI CTGCAG 1 cut(s) 292
PsuI RGATCY 1 cut(s) 17
RsaI GTAC 2 cut(s) 121, 304
RsaNI GTAC 2 cut(s) 120, 303
SaqAI TTAA 1 cut(s) 152
SatI GCNGC 2 cut(s) 416, 419
Sau3AI GATC 1 cut(s) 17
Sau96I GGNCC 2 cut(s) 207, 344
ScaI AGTACT 1 cut(s) 121
ScrFI CCNGG 2 cut(s) 35, 143
SexAI ACCWGGT 1 cut(s) 33
SfaNI GCATC 1 cut(s) 402
SfcI CTRYAG 2 cut(s) 288, 429
SfoI GGCGCC 1 cut(s) 465
SinI GGWCC 2 cut(s) 207, 344
SphI GCATGC 1 cut(s) 332
Sse9I AATT 3 cut(s) 308, 355, 368
SsiI CCGC 3 cut(s) 317, 332, 419
SspDI GGCGCC 1 cut(s) 463
SspMI CTAG 3 cut(s) 47, 123, 201
StyD4I CCNGG 2 cut(s) 33, 141
TaaI ACNGT 2 cut(s) 243, 532
TaiI ACGT 2 cut(s) 404, 455
TaqI TCGA 2 cut(s) 216, 353
TaqII GACCGA 1 cut(s) 332
TasI AATT 3 cut(s) 308, 355, 368
TatI WGTACW 1 cut(s) 119
TauI GCSGC 1 cut(s) 421
TfiI GAWTC 1 cut(s) 362
Tru1I TTAA 1 cut(s) 152
Tru9I TTAA 1 cut(s) 152
TseFI GTSAC 1 cut(s) 453
TseI GCWGC 1 cut(s) 415
Tsp45I GTSAC 1 cut(s) 453
Van91I CCANNNNNTGG 1 cut(s) 388
VpaK11BI GGWCC 2 cut(s) 207, 344
XapI RAATTY 2 cut(s) 355, 368
XceI RCATGY 1 cut(s) 332
XspI CTAG 3 cut(s) 47, 123, 201
ZrmI AGTACT 1 cut(s) 121
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.