Rroxscaffold_7G00193410

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000007
OG0017005
Physical Location & Seq
Reverse (-)
34912715 .. 34914833
2119 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_7G00193410.1

Sequence Viewer

Length: 558 bp
ATGATGCTGATGGTCTTGTTGTGTTTTATTAGTGGAGCTTTGTGGACTGAAAGATGTCGTGGGGGATATGTCCTTATGGCATCTTTTGGAACCAAAACTCTATCGTCTTTCTTCAAGTTGCCAGTGCCCCCAAGTGATGCTATGCAAGTGAGATGCGTTGACATCCTTCGTGATAGCAAGGGGAATCTTCCTCGCATGTTGAAGAATCTAAACCCATTCTTTATGCTGTTTATTTGTACTAAATGGATGAACAAATATCCCATGAACGGGCCCCACGCGCGAGTAAAGGCAAAAAATCCCGACGGCTTGTTTCTCTCCCGGCCGAATGCCGCGGCGCCTCGCCGTCGCGTTTCGGTCCGGAAGGGATGCGATGATGAGATGCGGAGGGTGATCCGAGAAGAAGCGGGATCCGGGCAAGAAGGTTGGGTCTTCGACCTTGGGCTGGACGGACGGTTCTCGTTCGTCCCTCTCGGATCGGAGACGATGGTGGGTGTGGAGCAGCGACTCGATGGCCCTTTTCGGTGGTGGGATGCGGAGCTACCATTCGGCGATCCGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

185

Amino Acids

20.97

Weight (kDa)

9.43

Isoelectric Point (pI)

44.79

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 334
AccII CGCG 4 cut(s) 278, 280, 332, 348
AccIII TCCGGA 1 cut(s) 357
AciI CCGC 5 cut(s) 330, 332, 382, 404, 533
AclWI GGATC 5 cut(s) 385, 402, 415, 481, 545
AcoI YGGCCR 1 cut(s) 320
AcyI GRCGYC 1 cut(s) 335
AfaI GTAC 1 cut(s) 238
AfiI CCNNNNNNNGG 3 cut(s) 266, 267, 442
AgsI TTSAA 2 cut(s) 115, 202
AloI GAACNNNNNNTCC 2 cut(s) 437, 469
AluBI AGCT 2 cut(s) 38, 538
AluI AGCT 2 cut(s) 38, 538
Alw26I GTCTC 1 cut(s) 473
AlwI GGATC 5 cut(s) 385, 402, 415, 481, 545
Aor13HI TCCGGA 1 cut(s) 357
AoxI GGCC 3 cut(s) 269, 320, 511
ApaI GGGCCC 1 cut(s) 273
ApeKI GCWGC 1 cut(s) 499
AspLEI GCGC 2 cut(s) 280, 337
AspS9I GGNCC 4 cut(s) 269, 270, 355, 512
AsuC2I CCSGG 2 cut(s) 319, 412
AsuHPI GGTGA 1 cut(s) 400
AvaII GGWCC 1 cut(s) 355
BaeGI GKGCMC 2 cut(s) 129, 273
BamHI GGATCC 1 cut(s) 407
BanI GGYRCC 1 cut(s) 334
BanII GRGCYC 1 cut(s) 273
BbsI GAAGAC 1 cut(s) 421
BbvI GCAGC 1 cut(s) 511
BccI CCATC 3 cut(s) 4, 478, 503
BceAI ACGGC 2 cut(s) 319, 327
BcnI CCSGG 2 cut(s) 319, 412
BcoDI GTCTC 1 cut(s) 473
BfoI RGCGCY 1 cut(s) 338
BisI GCNGC 3 cut(s) 330, 333, 500
BlsI GCNGC 3 cut(s) 331, 334, 501
Bme1390I CCNGG 2 cut(s) 319, 412
Bme18I GGWCC 1 cut(s) 355
BmgT120I GGNCC 4 cut(s) 269, 270, 355, 512
BmiI GGNNCC 5 cut(s) 91, 271, 272, 336, 409
BmrFI CCNGG 2 cut(s) 319, 412
BmsI GCATC 6 cut(s) 89, 127, 143, 356, 369, 520
BpiI GAAGAC 1 cut(s) 421
BpuMI CCSGG 2 cut(s) 319, 412
BsaHI GRCGYC 1 cut(s) 335
BsaJI CCNNGG 2 cut(s) 330, 436
BsaWI WCCGGW 1 cut(s) 357
Bsc4I CCNNNNNNNGG 3 cut(s) 266, 267, 442
Bse1I ACTGG 1 cut(s) 122
BseAI TCCGGA 1 cut(s) 357
BseDI CCNNGG 2 cut(s) 330, 436
BseGI GGATG 4 cut(s) 162, 252, 371, 535
BseLI CCNNNNNNNGG 3 cut(s) 266, 267, 442
BseNI ACTGG 1 cut(s) 122
BseSI GKGCMC 2 cut(s) 129, 273
BseX3I CGGCCG 1 cut(s) 320
BseXI GCAGC 1 cut(s) 511
Bsh1236I CGCG 4 cut(s) 278, 280, 332, 348
Bsh1285I CGRYCG 1 cut(s) 323
BshFI GGCC 3 cut(s) 271, 322, 513
BshNI GGYRCC 1 cut(s) 334
BsiEI CGRYCG 1 cut(s) 323
BsiSI CCGG 3 cut(s) 319, 358, 411
BslFI GGGAC 1 cut(s) 449
BslI CCNNNNNNNGG 3 cut(s) 266, 267, 442
BsmAI GTCTC 1 cut(s) 473
BsmBI CGTCTC 1 cut(s) 473
BsmFI GGGAC 1 cut(s) 449
BsmI GAATGC 1 cut(s) 331
BsnI GGCC 3 cut(s) 271, 322, 513
Bsp120I GGGCCC 1 cut(s) 269
Bsp1286I GDGCHC 2 cut(s) 129, 273
Bsp13I TCCGGA 1 cut(s) 357
Bsp143I GATC 4 cut(s) 390, 407, 473, 550
BspACI CCGC 5 cut(s) 330, 332, 382, 404, 533
BspANI GGCC 3 cut(s) 271, 322, 513
BspEI TCCGGA 1 cut(s) 357
BspFNI CGCG 4 cut(s) 278, 280, 332, 348
BspLI GGNNCC 5 cut(s) 91, 271, 272, 336, 409
BspPI GGATC 5 cut(s) 385, 402, 415, 481, 545
BspT107I GGYRCC 1 cut(s) 334
BsrI ACTGG 1 cut(s) 122
BssECI CCNNGG 2 cut(s) 330, 436
BssMI GATC 4 cut(s) 390, 407, 473, 550
BssNI GRCGYC 1 cut(s) 335
BssT1I CCWWGG 1 cut(s) 436
Bst4CI ACNGT 1 cut(s) 453
BstACI GRCGYC 1 cut(s) 335
BstDSI CCRYGG 1 cut(s) 330
BstF5I GGATG 4 cut(s) 162, 252, 371, 535
BstFNI CGCG 4 cut(s) 278, 280, 332, 348
BstH2I RGCGCY 1 cut(s) 338
BstHHI GCGC 2 cut(s) 280, 337
BstKTI GATC 4 cut(s) 393, 410, 476, 553
BstMAI GTCTC 1 cut(s) 473
BstMBI GATC 4 cut(s) 390, 407, 473, 550
BstMCI CGRYCG 1 cut(s) 323
BstMWI GCNNNNNNNGC 1 cut(s) 277
BstNSI RCATGY 1 cut(s) 199
BstSCI CCNGG 2 cut(s) 317, 410
BstSLI GKGCMC 2 cut(s) 129, 273
BstUI CGCG 4 cut(s) 278, 280, 332, 348
BstV1I GCAGC 1 cut(s) 511
BstV2I GAAGAC 1 cut(s) 421
BstX2I RGATCY 1 cut(s) 407
BstYI RGATCY 1 cut(s) 407
BstZI CGGCCG 1 cut(s) 320
BsuRI GGCC 3 cut(s) 271, 322, 513
BtgI CCRYGG 1 cut(s) 330
BtgZI GCGATG 1 cut(s) 384
BtsCI GGATG 4 cut(s) 162, 252, 371, 535
BtsIMutI CAGTG 1 cut(s) 129
CfoI GCGC 2 cut(s) 280, 337
Cfr13I GGNCC 4 cut(s) 269, 270, 355, 512
Cfr42I CCGCGG 1 cut(s) 333
CpoI CGGWCCG 1 cut(s) 355
Csp6I GTAC 1 cut(s) 237
CspI CGGWCCG 1 cut(s) 355
CviAII CATG 2 cut(s) 196, 262
CviJI RGCY 7 cut(s) 38, 271, 306, 322, 442, 513, 538
CviKI_1 RGCY 7 cut(s) 38, 271, 306, 322, 442, 513, 538
CviQI GTAC 1 cut(s) 237
DinI GGCGCC 1 cut(s) 336
DpnI GATC 4 cut(s) 392, 409, 475, 552
DpnII GATC 4 cut(s) 390, 407, 473, 550
EaeI YGGCCR 1 cut(s) 320
EagI CGGCCG 1 cut(s) 320
EclXI CGGCCG 1 cut(s) 320
Eco130I CCWWGG 1 cut(s) 436
Eco24I GRGCYC 1 cut(s) 273
Eco47I GGWCC 1 cut(s) 355
Eco52I CGGCCG 1 cut(s) 320
EcoO109I RGGNCCY 1 cut(s) 270
EcoT14I CCWWGG 1 cut(s) 436
EcoT38I GRGCYC 1 cut(s) 273
EgeI GGCGCC 1 cut(s) 336
EheI GGCGCC 1 cut(s) 336
ErhI CCWWGG 1 cut(s) 436
Esp3I CGTCTC 1 cut(s) 473
FaeI CATG 2 cut(s) 199, 265
FaiI YATR 6 cut(s) 69, 77, 143, 197, 224, 263
FaqI GGGAC 1 cut(s) 449
FatI CATG 2 cut(s) 195, 261
FauI CCCGC 1 cut(s) 397
Fnu4HI GCNGC 3 cut(s) 330, 333, 500
FokI GGATG 4 cut(s) 149, 259, 378, 542
FriOI GRGCYC 1 cut(s) 273
Fsp4HI GCNGC 3 cut(s) 330, 333, 500
GlaI GCGC 2 cut(s) 279, 336
GluI GCNGC 3 cut(s) 330, 333, 500
HaeII RGCGCY 1 cut(s) 338
HaeIII GGCC 3 cut(s) 271, 322, 513
HapII CCGG 3 cut(s) 319, 358, 411
HhaI GCGC 2 cut(s) 280, 337
Hin1I GRCGYC 1 cut(s) 335
Hin1II CATG 2 cut(s) 199, 265
Hin6I GCGC 2 cut(s) 278, 335
HinP1I GCGC 2 cut(s) 278, 335
HincII GTYRAC 1 cut(s) 160
HindII GTYRAC 1 cut(s) 160
HinfI GANTC 3 cut(s) 184, 205, 504
HpaII CCGG 3 cut(s) 319, 358, 411
HphI GGTGA 1 cut(s) 400
Hpy166II GTNNAC 2 cut(s) 45, 160
Hpy188I TCNGA 3 cut(s) 395, 473, 478
Hpy188III TCNNGA 3 cut(s) 170, 299, 358
Hpy8I GTNNAC 2 cut(s) 45, 160
Hpy99I CGWCG 2 cut(s) 305, 348
HpyAV CCTTC 3 cut(s) 176, 355, 413
HpyCH4III ACNGT 1 cut(s) 453
HpyCH4V TGCA 1 cut(s) 145
HpyF10VI GCNNNNNNNGC 1 cut(s) 277
Hsp92I GRCGYC 1 cut(s) 335
Hsp92II CATG 2 cut(s) 199, 265
HspAI GCGC 2 cut(s) 278, 335
KasI GGCGCC 1 cut(s) 334
Kpn2I TCCGGA 1 cut(s) 357
KspI CCGCGG 1 cut(s) 333
Kzo9I GATC 4 cut(s) 390, 407, 473, 550
LmnI GCTCC 3 cut(s) 35, 496, 535
LpnPI CCDG 5 cut(s) 135, 332, 371, 424, 428
Lsp1109I GCAGC 1 cut(s) 511
LweI GCATC 6 cut(s) 89, 127, 143, 356, 369, 520
MalI GATC 4 cut(s) 392, 409, 475, 552
MboI GATC 4 cut(s) 390, 407, 473, 550
MboII GAAGA 5 cut(s) 103, 179, 214, 410, 421
MflI RGATCY 1 cut(s) 407
MhlI GDGCHC 2 cut(s) 129, 273
Mly113I GGCGCC 1 cut(s) 335
MlyI GAGTC 1 cut(s) 498
MnlI CCTC 4 cut(s) 201, 348, 378, 477
MroI TCCGGA 1 cut(s) 357
MspA1I CMGCKG 1 cut(s) 332
MspI CCGG 3 cut(s) 319, 358, 411
MspR9I CCNGG 2 cut(s) 319, 412
Mva1269I GAATGC 1 cut(s) 331
MvnI CGCG 4 cut(s) 278, 280, 332, 348
MwoI GCNNNNNNNGC 1 cut(s) 277
NarI GGCGCC 1 cut(s) 335
NciI CCSGG 2 cut(s) 319, 412
NdeII GATC 4 cut(s) 390, 407, 473, 550
NlaIII CATG 2 cut(s) 199, 265
NlaIV GGNNCC 5 cut(s) 91, 271, 272, 336, 409
NspI RCATGY 1 cut(s) 199
PctI GAATGC 1 cut(s) 331
PfeI GAWTC 2 cut(s) 184, 205
PkrI GCNGC 3 cut(s) 331, 334, 501
PleI GAGTC 1 cut(s) 498
PluTI GGCGCC 1 cut(s) 338
PpsI GAGTC 1 cut(s) 498
PspN4I GGNNCC 5 cut(s) 91, 271, 272, 336, 409
PspOMI GGGCCC 1 cut(s) 269
PspPI GGNCC 4 cut(s) 269, 270, 355, 512
PsuI RGATCY 1 cut(s) 407
RsaI GTAC 1 cut(s) 238
RsaNI GTAC 1 cut(s) 237
Rsr2I CGGWCCG 1 cut(s) 355
RsrII CGGWCCG 1 cut(s) 355
SacII CCGCGG 1 cut(s) 333
SatI GCNGC 3 cut(s) 330, 333, 500
Sau3AI GATC 4 cut(s) 390, 407, 473, 550
Sau96I GGNCC 4 cut(s) 269, 270, 355, 512
SchI GAGTC 1 cut(s) 498
ScrFI CCNGG 2 cut(s) 319, 412
SduI GDGCHC 2 cut(s) 129, 273
SetI ASST 4 cut(s) 40, 424, 438, 540
SfaNI GCATC 6 cut(s) 89, 127, 143, 356, 369, 520
SfoI GGCGCC 1 cut(s) 336
Sfr303I CCGCGG 1 cut(s) 333
SgrBI CCGCGG 1 cut(s) 333
SinI GGWCC 1 cut(s) 355
SsiI CCGC 5 cut(s) 330, 332, 382, 404, 533
SspDI GGCGCC 1 cut(s) 334
StyD4I CCNGG 2 cut(s) 317, 410
StyI CCWWGG 1 cut(s) 436
TaaI ACNGT 1 cut(s) 453
TaqI TCGA 2 cut(s) 432, 507
TaqII GACCGA 1 cut(s) 343
TatI WGTACW 1 cut(s) 236
TauI GCSGC 2 cut(s) 332, 335
TfiI GAWTC 2 cut(s) 184, 205
TscAI CASTG 1 cut(s) 129
TseI GCWGC 1 cut(s) 499
TspDTI ATGAA 2 cut(s) 263, 278
TspGWI ACGGA 2 cut(s) 462, 543
TspRI CASTG 1 cut(s) 129
VpaK11BI GGWCC 1 cut(s) 355
XceI RCATGY 1 cut(s) 199
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.