Rh5DG437300

Belongs to the AAA ATPase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5D
OG0017005
Physical Location & Seq
Forward (+)
69719456 .. 69725060
5605 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5DG437300.1

Sequence Viewer

Length: 852 bp
ATGGCTGAGAAGTTTTATCCTCTGAACTGGTGTCTTGCAAAGCAATGTGCTGGAAGAGTGGATCTTCGTGGACCGAAAGTTGCCGTGGGGCGTATGTCCCTGTGGCATCTTTTGCAACCATCACTCTTTTGTGTTTCTCCAAGTTACTGGTGCCCCCAGGCAAATTTGTTGCTGTTTGGTCCGGAGGGTGAGAATGCGGTGATTTCCCTCTTTGGGGTGGCGAAATGCAAGCAGCCATATGTTATCTTCGTCGAAAATATTGACTATGTTTTATTAGCGTGTGAAAGTGAAGGTCGGGATGATAAATTTATGCGGACTAGAAATAGATTTATGAAGGAGAAACAGTTAATTGAATGGGAGGGTGGACAAGTTAATGTGATTGGTTCAAGTACTAGACCGGAAGTGCTTTCCCAGGAAGTATTAAACGAGTTTCGGAATAGGTTATATCTACCCTTACCCTCATTCAAAGCTAGGTGGTCCATTATCGAGGGATTTTTGGAGAGAGAAGGACTGTTTTGCCTGTCATGGTCTGACTTGCATGATATTTGCCACATGACTGCAGGTTACTCTGGTACAGAATTAGAGGCGGTAGTCAAGCATGCGGTATCTCTCGGTCCATTGTCGAATTTTGATTCAAAATTTTCCTATCACCATTTTTTGGCTCAGGAAACGTTGCTTGCGATGCTGCCGCCATTGACTACAGAGGATTTTGGCAGAGCTACGTCACTTCTGGCGCCATCTGTTTTGGCAGATGATGTCTCGGCTTATGAGGTTTGGGATAAGAAAAATGGCTCTGGAACTGTGAGGAAGAGGAATAGCCGAACAAGGCCGAGTATGAGGAGAAATGTTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000003 GO:0000018 GO:0000228 GO:0000280 GO:0000287 GO:0001503 GO:0001649 GO:0003674 GO:0003824 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005694 GO:0005737 GO:0006139 GO:0006163 GO:0006282 GO:0006725 GO:0006753 GO:0006793 GO:0006796 GO:0006807 GO:0006996 GO:0007049 GO:0007140 GO:0007276 GO:0008150 GO:0008152 GO:0008283 GO:0009117 GO:0009123 GO:0009126 GO:0009141 GO:0009144 GO:0009150 GO:0009161 GO:0009167 GO:0009199 GO:0009205 GO:0009259 GO:0009314 GO:0009628 GO:0009892 GO:0009987 GO:0010212 GO:0010520 GO:0010564 GO:0010569 GO:0010605 GO:0010639 GO:0010941 GO:0010948 GO:0016043 GO:0016787 GO:0017144 GO:0019219 GO:0019222 GO:0019637 GO:0019693 GO:0019953 GO:0022402 GO:0022412 GO:0022414 GO:0030154 GO:0031323 GO:0031324 GO:0031974 GO:0031981 GO:0032501 GO:0032502 GO:0032504 GO:0033043 GO:0033687 GO:0034641 GO:0040020 GO:0042981 GO:0043066 GO:0043067 GO:0043069 GO:0043167 GO:0043169 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044237 GO:0044238 GO:0044281 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044464 GO:0044703 GO:0045128 GO:0045786 GO:0045835 GO:0045910 GO:0045934 GO:0046034 GO:0046483 GO:0046872 GO:0048232 GO:0048285 GO:0048471 GO:0048519 GO:0048523 GO:0048583 GO:0048609 GO:0048869 GO:0050789 GO:0050794 GO:0050896 GO:0051052 GO:0051053 GO:0051128 GO:0051129 GO:0051171 GO:0051172 GO:0051321 GO:0051445 GO:0051447 GO:0051704 GO:0051716 GO:0051726 GO:0051783 GO:0051784 GO:0055086 GO:0060255 GO:0060548 GO:0060631 GO:0065007 GO:0070013 GO:0071214 GO:0071478 GO:0071479 GO:0071704 GO:0071840 GO:0072521 GO:0080090 GO:0080134 GO:0080135 GO:0104004 GO:0110029 GO:0140013 GO:1901135 GO:1901360 GO:1901564 GO:1903046 GO:2000241 GO:2000242 GO:2000779 GO:2001020
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
AAA Vps4_C

Protein Analysis

283

Amino Acids

32.1

Weight (kDa)

8.08

Isoelectric Point (pI)

48.9

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 551
AccB1I GGYRCC 2 cut(s) 150, 733
AccB7I CCANNNNNTGG 1 cut(s) 658
AccIII TCCGGA 1 cut(s) 181
AciI CCGC 5 cut(s) 197, 313, 587, 602, 689
AclI AACGTT 1 cut(s) 671
AclWI GGATC 1 cut(s) 69
AcsI RAATTY 4 cut(s) 163, 305, 625, 638
AcyI GRCGYC 1 cut(s) 734
AfaI GTAC 2 cut(s) 391, 574
AfiI CCNNNNNNNGG 3 cut(s) 213, 214, 658
AgsI TTSAA 4 cut(s) 353, 387, 466, 636
AjnI CCWGG 2 cut(s) 156, 411
AluBI AGCT 2 cut(s) 470, 719
AluI AGCT 2 cut(s) 470, 719
Alw26I GTCTC 1 cut(s) 763
AlwI GGATC 1 cut(s) 69
Aor13HI TCCGGA 1 cut(s) 181
AoxI GGCC 1 cut(s) 827
ApeKI GCWGC 2 cut(s) 232, 685
ApoI RAATTY 4 cut(s) 163, 305, 625, 638
AspLEI GCGC 1 cut(s) 736
AspS9I GGNCC 4 cut(s) 71, 179, 477, 614
AsuHPI GGTGA 3 cut(s) 200, 211, 641
AvaII GGWCC 4 cut(s) 71, 179, 477, 614
BaeGI GKGCMC 1 cut(s) 155
BanI GGYRCC 2 cut(s) 150, 733
BbvI GCAGC 2 cut(s) 244, 672
BccI CCATC 2 cut(s) 127, 745
BceAI ACGGC 1 cut(s) 68
BciT130I CCWGG 2 cut(s) 158, 413
BcoDI GTCTC 1 cut(s) 763
BfaI CTAG 3 cut(s) 318, 393, 471
BfmI CTRYAG 2 cut(s) 558, 699
BfoI RGCGCY 1 cut(s) 737
BfuAI ACCTGC 1 cut(s) 551
BisI GCNGC 3 cut(s) 233, 686, 689
BlsI GCNGC 3 cut(s) 234, 687, 690
BmcAI AGTACT 1 cut(s) 391
Bme1390I CCNGG 2 cut(s) 158, 413
Bme18I GGWCC 4 cut(s) 71, 179, 477, 614
BmgT120I GGNCC 4 cut(s) 71, 179, 477, 614
BmiI GGNNCC 2 cut(s) 152, 735
BmrFI CCNGG 2 cut(s) 158, 413
BmsI GCATC 2 cut(s) 115, 672
Bpu10I CCTNAGC 1 cut(s) 663
BsaHI GRCGYC 1 cut(s) 734
BsaJI CCNNGG 3 cut(s) 84, 156, 411
BsaWI WCCGGW 2 cut(s) 181, 397
BsaXI ACNNNNNCTCC 2 cut(s) 329, 359
Bsc4I CCNNNNNNNGG 3 cut(s) 213, 214, 658
Bse1I ACTGG 2 cut(s) 32, 152
Bse3DI GCAATG 1 cut(s) 50
BseAI TCCGGA 1 cut(s) 181
BseBI CCWGG 2 cut(s) 158, 413
BseDI CCNNGG 3 cut(s) 84, 156, 411
BseGI GGATG 1 cut(s) 304
BseLI CCNNNNNNNGG 3 cut(s) 213, 214, 658
BseMI GCAATG 1 cut(s) 50
BseMII CTCAG 1 cut(s) 677
BseNI ACTGG 2 cut(s) 32, 152
BseSI GKGCMC 1 cut(s) 155
BseXI GCAGC 2 cut(s) 244, 672
BshFI GGCC 1 cut(s) 829
BshNI GGYRCC 2 cut(s) 150, 733
BsiSI CCGG 2 cut(s) 182, 398
BslFI GGGAC 1 cut(s) 82
BslI CCNNNNNNNGG 3 cut(s) 213, 214, 658
BsmAI GTCTC 1 cut(s) 763
BsmFI GGGAC 1 cut(s) 82
BsmI GAATGC 1 cut(s) 199
BsnI GGCC 1 cut(s) 829
Bsp1286I GDGCHC 1 cut(s) 155
Bsp13I TCCGGA 1 cut(s) 181
Bsp143I GATC 1 cut(s) 61
BspACI CCGC 5 cut(s) 197, 313, 587, 602, 689
BspANI GGCC 1 cut(s) 829
BspCNI CTCAG 1 cut(s) 676
BspEI TCCGGA 1 cut(s) 181
BspLI GGNNCC 2 cut(s) 152, 735
BspMAI CTGCAG 1 cut(s) 562
BspMI ACCTGC 1 cut(s) 551
BspPI GGATC 1 cut(s) 69
BspT107I GGYRCC 2 cut(s) 150, 733
BsrDI GCAATG 1 cut(s) 50
BsrI ACTGG 2 cut(s) 32, 152
BssECI CCNNGG 3 cut(s) 84, 156, 411
BssMI GATC 1 cut(s) 61
BssNI GRCGYC 1 cut(s) 734
Bst2UI CCWGG 2 cut(s) 158, 413
Bst4CI ACNGT 3 cut(s) 345, 513, 802
Bst6I CTCTTC 2 cut(s) 49, 803
BstACI GRCGYC 1 cut(s) 734
BstAPI GCANNNNNTGC 1 cut(s) 112
BstC8I GCNNGC 3 cut(s) 230, 600, 678
BstDEI CTNAG 2 cut(s) 6, 663
BstDSI CCRYGG 1 cut(s) 84
BstF5I GGATG 1 cut(s) 304
BstH2I RGCGCY 1 cut(s) 737
BstHHI GCGC 1 cut(s) 736
BstKTI GATC 1 cut(s) 64
BstMAI GTCTC 1 cut(s) 763
BstMBI GATC 1 cut(s) 61
BstMWI GCNNNNNNNGC 2 cut(s) 112, 682
BstNI CCWGG 2 cut(s) 158, 413
BstNSI RCATGY 1 cut(s) 602
BstSCI CCNGG 2 cut(s) 156, 411
BstSFI CTRYAG 2 cut(s) 558, 699
BstSLI GKGCMC 1 cut(s) 155
BstV1I GCAGC 2 cut(s) 244, 672
BstX2I RGATCY 1 cut(s) 61
BstXI CCANNNNNNTGG 1 cut(s) 147
BstYI RGATCY 1 cut(s) 61
BsuRI GGCC 1 cut(s) 829
BtgI CCRYGG 1 cut(s) 84
BtgZI GCGATG 1 cut(s) 695
BtsCI GGATG 1 cut(s) 304
BveI ACCTGC 1 cut(s) 551
Cac8I GCNNGC 3 cut(s) 230, 600, 678
CfoI GCGC 1 cut(s) 736
Cfr13I GGNCC 4 cut(s) 71, 179, 477, 614
Csp6I GTAC 2 cut(s) 390, 573
CviAII CATG 4 cut(s) 525, 539, 553, 599
CviJI RGCY 9 cut(s) 5, 235, 470, 662, 719, 764, 792, 819, 829
CviKI_1 RGCY 9 cut(s) 5, 235, 470, 662, 719, 764, 792, 819, 829
CviQI GTAC 2 cut(s) 390, 573
DdeI CTNAG 2 cut(s) 6, 663
DinI GGCGCC 1 cut(s) 735
DpnI GATC 1 cut(s) 63
DpnII GATC 1 cut(s) 61
Eam1104I CTCTTC 2 cut(s) 49, 803
EarI CTCTTC 2 cut(s) 49, 803
Eco47I GGWCC 4 cut(s) 71, 179, 477, 614
EcoRII CCWGG 2 cut(s) 156, 411
EgeI GGCGCC 1 cut(s) 735
EheI GGCGCC 1 cut(s) 735
FaeI CATG 4 cut(s) 528, 542, 556, 602
FaqI GGGAC 1 cut(s) 82
FatI CATG 4 cut(s) 524, 538, 552, 598
FauNDI CATATG 1 cut(s) 238
Fnu4HI GCNGC 3 cut(s) 233, 686, 689
FokI GGATG 1 cut(s) 311
Fsp4HI GCNGC 3 cut(s) 233, 686, 689
FspBI CTAG 3 cut(s) 318, 393, 471
GlaI GCGC 1 cut(s) 735
GluI GCNGC 3 cut(s) 233, 686, 689
HaeII RGCGCY 1 cut(s) 737
HaeIII GGCC 1 cut(s) 829
HapII CCGG 2 cut(s) 182, 398
HhaI GCGC 1 cut(s) 736
Hin1I GRCGYC 1 cut(s) 734
Hin1II CATG 4 cut(s) 528, 542, 556, 602
Hin6I GCGC 1 cut(s) 734
HinP1I GCGC 1 cut(s) 734
HinfI GANTC 1 cut(s) 632
HpaII CCGG 2 cut(s) 182, 398
HphI GGTGA 3 cut(s) 200, 211, 641
Hpy166II GTNNAC 2 cut(s) 71, 365
Hpy188I TCNGA 3 cut(s) 24, 435, 532
Hpy188III TCNNGA 4 cut(s) 182, 296, 665, 795
Hpy8I GTNNAC 2 cut(s) 71, 365
Hpy99I CGWCG 1 cut(s) 254
HpyAV CCTTC 3 cut(s) 284, 328, 500
HpyCH4III ACNGT 3 cut(s) 345, 513, 802
HpyCH4IV ACGT 2 cut(s) 671, 722
HpyCH4V TGCA 5 cut(s) 38, 115, 228, 538, 560
HpyF10VI GCNNNNNNNGC 2 cut(s) 112, 682
HpyF3I CTNAG 2 cut(s) 6, 663
HpySE526I ACGT 2 cut(s) 671, 722
Hsp92I GRCGYC 1 cut(s) 734
Hsp92II CATG 4 cut(s) 528, 542, 556, 602
HspAI GCGC 1 cut(s) 734
KasI GGCGCC 1 cut(s) 733
Kpn2I TCCGGA 1 cut(s) 181
Kzo9I GATC 1 cut(s) 61
Lsp1109I GCAGC 2 cut(s) 244, 672
LweI GCATC 2 cut(s) 115, 672
MaeI CTAG 3 cut(s) 318, 393, 471
MaeII ACGT 2 cut(s) 671, 722
MaeIII GTNAC 3 cut(s) 143, 563, 723
MalI GATC 1 cut(s) 63
MboI GATC 1 cut(s) 61
MboII GAAGA 4 cut(s) 56, 66, 238, 820
MflI RGATCY 1 cut(s) 61
MhlI GDGCHC 1 cut(s) 155
MluCI AATT 6 cut(s) 163, 305, 348, 578, 625, 638
Mly113I GGCGCC 1 cut(s) 734
MroI TCCGGA 1 cut(s) 181
MseI TTAA 3 cut(s) 347, 372, 422
MspI CCGG 2 cut(s) 182, 398
MspR9I CCNGG 2 cut(s) 158, 413
Mva1269I GAATGC 1 cut(s) 199
MvaI CCWGG 2 cut(s) 158, 413
MwoI GCNNNNNNNGC 2 cut(s) 112, 682
NarI GGCGCC 1 cut(s) 734
NdeI CATATG 1 cut(s) 238
NdeII GATC 1 cut(s) 61
NlaIII CATG 4 cut(s) 528, 542, 556, 602
NlaIV GGNNCC 2 cut(s) 152, 735
NmeAIII GCCGAG 1 cut(s) 740
NmuCI GTSAC 1 cut(s) 723
NspI RCATGY 1 cut(s) 602
PaeI GCATGC 1 cut(s) 602
PcsI WCGNNNNNNNCGW 1 cut(s) 677
PctI GAATGC 1 cut(s) 199
PfeI GAWTC 1 cut(s) 632
PflMI CCANNNNNTGG 1 cut(s) 658
PkrI GCNGC 3 cut(s) 234, 687, 690
PluTI GGCGCC 1 cut(s) 737
Psp1406I AACGTT 1 cut(s) 671
Psp6I CCWGG 2 cut(s) 156, 411
PspGI CCWGG 2 cut(s) 156, 411
PspN4I GGNNCC 2 cut(s) 152, 735
PspPI GGNCC 4 cut(s) 71, 179, 477, 614
PstI CTGCAG 1 cut(s) 562
PsuI RGATCY 1 cut(s) 61
RsaI GTAC 2 cut(s) 391, 574
RsaNI GTAC 2 cut(s) 390, 573
SaqAI TTAA 3 cut(s) 347, 372, 422
SatI GCNGC 3 cut(s) 233, 686, 689
Sau3AI GATC 1 cut(s) 61
Sau96I GGNCC 4 cut(s) 71, 179, 477, 614
ScaI AGTACT 1 cut(s) 391
ScrFI CCNGG 2 cut(s) 158, 413
SduI GDGCHC 1 cut(s) 155
SetI ASST 9 cut(s) 295, 443, 472, 476, 565, 674, 721, 725, 774
SfaNI GCATC 2 cut(s) 115, 672
SfcI CTRYAG 2 cut(s) 558, 699
SfoI GGCGCC 1 cut(s) 735
SinI GGWCC 4 cut(s) 71, 179, 477, 614
SphI GCATGC 1 cut(s) 602
Sse9I AATT 6 cut(s) 163, 305, 348, 578, 625, 638
SsiI CCGC 5 cut(s) 197, 313, 587, 602, 689
SspDI GGCGCC 1 cut(s) 733
SspI AATATT 1 cut(s) 259
SspMI CTAG 3 cut(s) 318, 393, 471
StyD4I CCNGG 2 cut(s) 156, 411
TaaI ACNGT 3 cut(s) 345, 513, 802
TaiI ACGT 2 cut(s) 674, 725
TaqI TCGA 3 cut(s) 252, 486, 623
TaqII GACCGA 2 cut(s) 88, 602
TasI AATT 6 cut(s) 163, 305, 348, 578, 625, 638
TatI WGTACW 1 cut(s) 389
TauI GCSGC 1 cut(s) 691
TfiI GAWTC 1 cut(s) 632
Tru1I TTAA 3 cut(s) 347, 372, 422
Tru9I TTAA 3 cut(s) 347, 372, 422
TseFI GTSAC 1 cut(s) 723
TseI GCWGC 2 cut(s) 232, 685
Tsp45I GTSAC 1 cut(s) 723
TspDTI ATGAA 1 cut(s) 347
Van91I CCANNNNNTGG 1 cut(s) 658
VpaK11BI GGWCC 4 cut(s) 71, 179, 477, 614
XapI RAATTY 4 cut(s) 163, 305, 625, 638
XceI RCATGY 1 cut(s) 602
XspI CTAG 3 cut(s) 318, 393, 471
ZrmI AGTACT 1 cut(s) 391
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.