Rorug05G0358000

Belongs to the AAA ATPase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000005
OG0017005
Physical Location & Seq
Forward (+)
45420876 .. 45426304
5429 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug05G0358000.1

Sequence Viewer

Length: 1176 bp
ATGGGGAACTTGTGCTTTAAACCAGCAAAGTGTGCTCATGCTTCTTCCAACAACTTCCCTGTCCCTCCTGGAGGTACAAAGTACAATGGGAAGGAACAGCAGGATTTAGCATCCTCCAACCAGGACATACCATTGGGTGGTCCCAATCCTAAAGCTCTAATAGCACCCAATGCAGCTGATACATGTGTTCCTAGCACCCTTAAGTCCTTTAGTTTCATTGATCTCAAGAATGCTACTAGGAACTTCCGCCCAGATAGTCTGCTTGGAGAGGGAGGGTTTGGGTGGGTCTTCAAAGGCTGGATTGATGCAAACACCTTAGCTCCCACTAGACCAGGAACTGGCTTGGTGGTGGCTATCAAGAGGCTCAAGCGAGAAAGCTTTCAAGGTCACAAGGAATGGCTTGCAGAAGTGAACTATCTTGGTCAGCTTCACCATGAAAATCTTGTTAAACTCATAGGGTATTGCTCAGAATCTGACAATAGACTTCTTGTTTACGAGTTTATGCCCAAGGGAAGTTTGGAGAATCATTTGTTTAGGAGTGTACAGCCTATACCATGGGCTATGCGGATGAATATTGCAATTGATGTTGCAAGGGGGTTGTCCTTTTTACATAGTTTAGATGCTAATGTTATCTACCGTGACTTGAAGGCTTCCAACATTCTACTTGATTCAGATTTCAGTGCAAAGCTATCAGATTTTGGTTTAGCAAGGGACGGTCCTACTGGAGACAACACTCATGTTTCAACCAGAGTCGTGGGAACTAGAGGCTATGCTGCACCAGAATATGTTGCTACAGGTCACTTGACACCAAAGAGTGATGTGTACAGCTTCGGTGTCGTTCTGTTAGAGCTACTATCAGGAAGACGAGCAATGGATGATGAGAGAGCTGGGAGTGTGGAGGAAACACTGGTGGATTGGGCAAAGCCATTTTTGATTGATAGTAAACGAGTTCTGAGAATCATGGACACAAGGTTGGGGGGTCAATATCCGAAGAAAGCCGCCCAAGCTGCAGCTGCACTTGCTTTGCAGTGTCTTCATACAGATCCAAAGAATAGGCCACTCATGATCGATGTTCTAGCCACATTGGAACGACTCCACTCAAAGGAGATAGTGCGGACTCAACAACCTAAACTAACCCCTCATGGGGTTAAGCATTCGAACCATCTCACAAGATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000003 GO:0000018 GO:0000228 GO:0000280 GO:0000287 GO:0001503 GO:0001649 GO:0003674 GO:0003824 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005694 GO:0005737 GO:0006139 GO:0006163 GO:0006282 GO:0006725 GO:0006753 GO:0006793 GO:0006796 GO:0006807 GO:0006996 GO:0007049 GO:0007140 GO:0007276 GO:0008150 GO:0008152 GO:0008283 GO:0009117 GO:0009123 GO:0009126 GO:0009141 GO:0009144 GO:0009150 GO:0009161 GO:0009167 GO:0009199 GO:0009205 GO:0009259 GO:0009314 GO:0009628 GO:0009892 GO:0009987 GO:0010212 GO:0010520 GO:0010564 GO:0010569 GO:0010605 GO:0010639 GO:0010941 GO:0010948 GO:0016043 GO:0016787 GO:0017144 GO:0019219 GO:0019222 GO:0019637 GO:0019693 GO:0019953 GO:0022402 GO:0022412 GO:0022414 GO:0030154 GO:0031323 GO:0031324 GO:0031974 GO:0031981 GO:0032501 GO:0032502 GO:0032504 GO:0033043 GO:0033687 GO:0034641 GO:0040020 GO:0042981 GO:0043066 GO:0043067 GO:0043069 GO:0043167 GO:0043169 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044237 GO:0044238 GO:0044281 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044464 GO:0044703 GO:0045128 GO:0045786 GO:0045835 GO:0045910 GO:0045934 GO:0046034 GO:0046483 GO:0046872 GO:0048232 GO:0048285 GO:0048471 GO:0048519 GO:0048523 GO:0048583 GO:0048609 GO:0048869 GO:0050789 GO:0050794 GO:0050896 GO:0051052 GO:0051053 GO:0051128 GO:0051129 GO:0051171 GO:0051172 GO:0051321 GO:0051445 GO:0051447 GO:0051704 GO:0051716 GO:0051726 GO:0051783 GO:0051784 GO:0055086 GO:0060255 GO:0060548 GO:0060631 GO:0065007 GO:0070013 GO:0071214 GO:0071478 GO:0071479 GO:0071704 GO:0071840 GO:0072521 GO:0080090 GO:0080134 GO:0080135 GO:0104004 GO:0110029 GO:0140013 GO:1901135 GO:1901360 GO:1901564 GO:1903046 GO:2000241 GO:2000242 GO:2000779 GO:2001020
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
AAA Vps4_C

Protein Analysis

391

Amino Acids

43.03

Weight (kDa)

9.15

Isoelectric Point (pI)

26.1

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Pkinase PF00069 85 - 359 1.1e-47 Protein kinase domain
PK_Tyr_Ser-Thr PF07714 86 - 360 2.1e-49 Protein tyrosine and serine/threonine kinase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 2 cut(s) 137, 338
AciI CCGC 4 cut(s) 247, 565, 999, 1114
AclWI GGATC 1 cut(s) 1037
AfaI GTAC 4 cut(s) 76, 83, 543, 824
AfiI CCNNNNNNNGG 6 cut(s) 71, 137, 338, 1102, 1143, 1144
AflII CTTAAG 1 cut(s) 200
AflIII ACRYGT 1 cut(s) 182
AgsI TTSAA 4 cut(s) 292, 383, 646, 744
AjnI CCWGG 3 cut(s) 67, 120, 331
Alw21I GWGCWC 1 cut(s) 37
Alw26I GTCTC 1 cut(s) 720
AlwI GGATC 1 cut(s) 1037
AlwNI CAGNNNCTG 2 cut(s) 338, 473
AoxI GGCC 1 cut(s) 1055
ApeKI GCWGC 5 cut(s) 173, 773, 1007, 1010, 1013
Asp700I GAANNNNTTC 1 cut(s) 378
AspS9I GGNCC 2 cut(s) 140, 716
AsuHPI GGTGA 1 cut(s) 422
AsuII TTCGAA 1 cut(s) 1157
AvaII GGWCC 2 cut(s) 140, 716
BaeI ACNNNNGTAYC 2 cut(s) 171, 204
BbsI GAAGAC 3 cut(s) 280, 868, 1025
Bbv12I GWGCWC 1 cut(s) 37
BbvI GCAGC 5 cut(s) 185, 760, 994, 1000, 1022
BccI CCATC 1 cut(s) 1170
BciT130I CCWGG 3 cut(s) 69, 122, 333
BcoDI GTCTC 1 cut(s) 720
BfaI CTAG 5 cut(s) 192, 237, 327, 762, 1076
BfmI CTRYAG 2 cut(s) 792, 1008
BfrI CTTAAG 1 cut(s) 200
BisI GCNGC 6 cut(s) 174, 774, 999, 1008, 1011, 1014
BlsI GCNGC 6 cut(s) 175, 775, 1000, 1009, 1012, 1015
Bme1390I CCNGG 3 cut(s) 69, 122, 333
Bme18I GGWCC 2 cut(s) 140, 716
BmgT120I GGNCC 2 cut(s) 140, 716
BmiI GGNNCC 1 cut(s) 142
BmrFI CCNGG 3 cut(s) 69, 122, 333
BmsI GCATC 3 cut(s) 119, 295, 610
BpiI GAAGAC 3 cut(s) 280, 868, 1025
BpmI CTGGAG 2 cut(s) 90, 744
Bpu10I CCTNAGC 1 cut(s) 316
Bpu14I TTCGAA 1 cut(s) 1157
BpuEI CTTGAG 2 cut(s) 209, 350
Bsa29I ATCGAT 1 cut(s) 1068
BsaJI CCNNGG 2 cut(s) 507, 554
BsaXI ACNNNNNCTCC 2 cut(s) 304, 334
Bsc4I CCNNNNNNNGG 6 cut(s) 71, 137, 338, 1102, 1143, 1144
Bse1I ACTGG 3 cut(s) 343, 727, 912
Bse3DI GCAATG 1 cut(s) 876
BseBI CCWGG 3 cut(s) 69, 122, 333
BseCI ATCGAT 1 cut(s) 1068
BseDI CCNNGG 2 cut(s) 507, 554
BseGI GGATG 3 cut(s) 110, 573, 880
BseLI CCNNNNNNNGG 6 cut(s) 71, 137, 338, 1102, 1143, 1144
BseMI GCAATG 1 cut(s) 876
BseMII CTCAG 2 cut(s) 480, 944
BseNI ACTGG 3 cut(s) 343, 727, 912
BseXI GCAGC 5 cut(s) 185, 760, 994, 1000, 1022
BseYI CCCAGC 1 cut(s) 887
BsgI GTGCAG 2 cut(s) 759, 999
BshFI GGCC 1 cut(s) 1057
BshVI ATCGAT 1 cut(s) 1068
BsiHKAI GWGCWC 1 cut(s) 37
BslFI GGGAC 3 cut(s) 47, 126, 725
BslI CCNNNNNNNGG 6 cut(s) 71, 137, 338, 1102, 1143, 1144
BsmAI GTCTC 1 cut(s) 720
BsmFI GGGAC 3 cut(s) 47, 126, 725
BsmI GAATGC 2 cut(s) 235, 1153
BsnI GGCC 1 cut(s) 1057
Bsp119I TTCGAA 1 cut(s) 1157
Bsp1286I GDGCHC 1 cut(s) 37
Bsp1407I TGTACA 2 cut(s) 541, 822
Bsp143I GATC 3 cut(s) 220, 1042, 1065
Bsp19I CCATGG 1 cut(s) 554
BspACI CCGC 4 cut(s) 247, 565, 999, 1114
BspANI GGCC 1 cut(s) 1057
BspCNI CTCAG 2 cut(s) 479, 945
BspDI ATCGAT 1 cut(s) 1068
BspHI TCATGA 1 cut(s) 1062
BspLI GGNNCC 1 cut(s) 142
BspMAI CTGCAG 1 cut(s) 1012
BspPI GGATC 1 cut(s) 1037
BspT104I TTCGAA 1 cut(s) 1157
BspTI CTTAAG 1 cut(s) 200
BsrDI GCAATG 1 cut(s) 876
BsrGI TGTACA 2 cut(s) 541, 822
BsrI ACTGG 3 cut(s) 343, 727, 912
BssECI CCNNGG 2 cut(s) 507, 554
BssMI GATC 3 cut(s) 220, 1042, 1065
BssT1I CCWWGG 2 cut(s) 507, 554
Bst2UI CCWGG 3 cut(s) 69, 122, 333
Bst4CI ACNGT 2 cut(s) 638, 716
BstAFI CTTAAG 1 cut(s) 200
BstAPI GCANNNNNTGC 2 cut(s) 32, 170
BstAUI TGTACA 2 cut(s) 541, 822
BstBI TTCGAA 1 cut(s) 1157
BstC8I GCNNGC 1 cut(s) 402
BstDEI CTNAG 3 cut(s) 316, 466, 953
BstDSI CCRYGG 1 cut(s) 554
BstENI CCTNNNNNAGG 1 cut(s) 69
BstF5I GGATG 3 cut(s) 110, 573, 880
BstKTI GATC 3 cut(s) 223, 1045, 1068
BstMAI GTCTC 1 cut(s) 720
BstMBI GATC 3 cut(s) 220, 1042, 1065
BstMWI GCNNNNNNNGC 7 cut(s) 32, 161, 170, 1004, 1007, 1013, 1019
BstNI CCWGG 3 cut(s) 69, 122, 333
BstNSI RCATGY 1 cut(s) 186
BstSCI CCNGG 3 cut(s) 67, 120, 331
BstSFI CTRYAG 2 cut(s) 792, 1008
BstV1I GCAGC 5 cut(s) 185, 760, 994, 1000, 1022
BstV2I GAAGAC 3 cut(s) 280, 868, 1025
BstX2I RGATCY 1 cut(s) 1042
BstXI CCANNNNNNTGG 1 cut(s) 754
BstYI RGATCY 1 cut(s) 1042
Bsu15I ATCGAT 1 cut(s) 1068
BsuRI GGCC 1 cut(s) 1057
BsuTUI ATCGAT 1 cut(s) 1068
BtgI CCRYGG 1 cut(s) 554
BtsCI GGATG 3 cut(s) 110, 573, 880
BtsI GCAGTG 1 cut(s) 1034
BtsIMutI CAGTG 3 cut(s) 685, 905, 1034
Cac8I GCNNGC 1 cut(s) 402
CaiI CAGNNNCTG 2 cut(s) 338, 473
CciI TCATGA 1 cut(s) 1062
Cfr13I GGNCC 2 cut(s) 140, 716
ClaI ATCGAT 1 cut(s) 1068
Csp6I GTAC 4 cut(s) 75, 82, 542, 823
CviAII CATG 8 cut(s) 38, 183, 434, 555, 737, 961, 1063, 1142
CviQI GTAC 4 cut(s) 75, 82, 542, 823
DdeI CTNAG 3 cut(s) 316, 466, 953
DpnI GATC 3 cut(s) 222, 1044, 1067
DpnII GATC 3 cut(s) 220, 1042, 1065
DraI TTTAAA 1 cut(s) 19
EciI GGCGGA 1 cut(s) 236
Eco130I CCWWGG 2 cut(s) 507, 554
Eco47I GGWCC 2 cut(s) 140, 716
EcoNI CCTNNNNNAGG 1 cut(s) 69
EcoRII CCWGG 3 cut(s) 67, 120, 331
EcoT14I CCWWGG 2 cut(s) 507, 554
ErhI CCWWGG 2 cut(s) 507, 554
FaeI CATG 8 cut(s) 41, 186, 437, 558, 740, 964, 1066, 1145
FaqI GGGAC 3 cut(s) 47, 126, 725
FatI CATG 8 cut(s) 37, 182, 433, 554, 736, 960, 1062, 1141
Fnu4HI GCNGC 6 cut(s) 174, 774, 999, 1008, 1011, 1014
FokI GGATG 3 cut(s) 97, 580, 887
Fsp4HI GCNGC 6 cut(s) 174, 774, 999, 1008, 1011, 1014
FspBI CTAG 5 cut(s) 192, 237, 327, 762, 1076
GluI GCNGC 6 cut(s) 174, 774, 999, 1008, 1011, 1014
GsaI CCCAGC 1 cut(s) 891
GsuI CTGGAG 2 cut(s) 90, 744
HaeIII GGCC 1 cut(s) 1057
Hin1II CATG 8 cut(s) 41, 186, 437, 558, 740, 964, 1066, 1145
HindIII AAGCTT 1 cut(s) 376
HinfI GANTC 7 cut(s) 470, 523, 668, 750, 957, 1092, 1117
HphI GGTGA 1 cut(s) 422
Hpy166II GTNNAC 5 cut(s) 412, 493, 542, 823, 944
Hpy188I TCNGA 6 cut(s) 469, 475, 673, 694, 954, 990
Hpy188III TCNNGA 4 cut(s) 226, 358, 858, 1063
Hpy8I GTNNAC 5 cut(s) 412, 493, 542, 823, 944
HpyAV CCTTC 2 cut(s) 85, 640
HpyCH4III ACNGT 2 cut(s) 638, 716
HpyF10VI GCNNNNNNNGC 7 cut(s) 32, 161, 170, 1004, 1007, 1013, 1019
HpyF3I CTNAG 3 cut(s) 316, 466, 953
Hsp92II CATG 8 cut(s) 41, 186, 437, 558, 740, 964, 1066, 1145
Kzo9I GATC 3 cut(s) 220, 1042, 1065
LmnI GCTCC 1 cut(s) 325
Lsp1109I GCAGC 5 cut(s) 185, 760, 994, 1000, 1022
LweI GCATC 3 cut(s) 119, 295, 610
MaeI CTAG 5 cut(s) 192, 237, 327, 762, 1076
MaeIII GTNAC 3 cut(s) 386, 638, 797
MalI GATC 3 cut(s) 222, 1044, 1067
MboI GATC 3 cut(s) 220, 1042, 1065
MboII GAAGA 5 cut(s) 36, 280, 873, 1003, 1025
MfeI CAATTG 1 cut(s) 579
MflI RGATCY 1 cut(s) 1042
MhlI GDGCHC 1 cut(s) 37
MluCI AATT 1 cut(s) 579
MlyI GAGTC 3 cut(s) 759, 1086, 1111
MmeI TCCRAC 3 cut(s) 72, 141, 678
MnlI CCTC 9 cut(s) 65, 75, 124, 262, 266, 354, 758, 892, 1149
MroXI GAANNNNTTC 1 cut(s) 378
MseI TTAA 4 cut(s) 18, 201, 447, 1149
MspA1I CMGCKG 2 cut(s) 176, 1013
MspCI CTTAAG 1 cut(s) 200
MspR9I CCNGG 3 cut(s) 69, 122, 333
MunI CAATTG 1 cut(s) 579
Mva1269I GAATGC 2 cut(s) 235, 1153
MvaI CCWGG 3 cut(s) 69, 122, 333
MwoI GCNNNNNNNGC 7 cut(s) 32, 161, 170, 1004, 1007, 1013, 1019
NcoI CCATGG 1 cut(s) 554
NdeII GATC 3 cut(s) 220, 1042, 1065
NlaIII CATG 8 cut(s) 41, 186, 437, 558, 740, 964, 1066, 1145
NlaIV GGNNCC 1 cut(s) 142
NmuCI GTSAC 3 cut(s) 386, 638, 797
NspI RCATGY 1 cut(s) 186
NspV TTCGAA 1 cut(s) 1157
PagI TCATGA 1 cut(s) 1062
PciI ACATGT 1 cut(s) 182
PctI GAATGC 2 cut(s) 235, 1153
PdmI GAANNNNTTC 1 cut(s) 378
PfeI GAWTC 4 cut(s) 470, 523, 668, 957
PflMI CCANNNNNTGG 2 cut(s) 137, 338
PfoI TCCNGGA 1 cut(s) 67
PkrI GCNGC 6 cut(s) 175, 775, 1000, 1009, 1012, 1015
PleI GAGTC 3 cut(s) 758, 1086, 1111
PpsI GAGTC 3 cut(s) 758, 1086, 1111
PscI ACATGT 1 cut(s) 182
Psp6I CCWGG 3 cut(s) 67, 120, 331
PspFI CCCAGC 1 cut(s) 887
PspGI CCWGG 3 cut(s) 67, 120, 331
PspN4I GGNNCC 1 cut(s) 142
PspPI GGNCC 2 cut(s) 140, 716
PstI CTGCAG 1 cut(s) 1012
PstNI CAGNNNCTG 2 cut(s) 338, 473
PsuI RGATCY 1 cut(s) 1042
PvuII CAGCTG 2 cut(s) 176, 1013
RsaI GTAC 4 cut(s) 76, 83, 543, 824
RsaNI GTAC 4 cut(s) 75, 82, 542, 823
SaqAI TTAA 4 cut(s) 18, 201, 447, 1149
SatI GCNGC 6 cut(s) 174, 774, 999, 1008, 1011, 1014
Sau3AI GATC 3 cut(s) 220, 1042, 1065
Sau96I GGNCC 2 cut(s) 140, 716
SchI GAGTC 3 cut(s) 759, 1086, 1111
ScrFI CCNGG 3 cut(s) 69, 122, 333
SduI GDGCHC 1 cut(s) 37
SfaNI GCATC 3 cut(s) 119, 295, 610
SfcI CTRYAG 2 cut(s) 792, 1008
SfuI TTCGAA 1 cut(s) 1157
SinI GGWCC 2 cut(s) 140, 716
SmlI CTYRAG 3 cut(s) 200, 224, 365
SmoI CTYRAG 3 cut(s) 200, 224, 365
Sse9I AATT 1 cut(s) 579
SsiI CCGC 4 cut(s) 247, 565, 999, 1114
SspI AATATT 1 cut(s) 574
SspMI CTAG 5 cut(s) 192, 237, 327, 762, 1076
StyD4I CCNGG 3 cut(s) 67, 120, 331
StyI CCWWGG 2 cut(s) 507, 554
TaaI ACNGT 2 cut(s) 638, 716
TaqI TCGA 2 cut(s) 1068, 1157
TasI AATT 1 cut(s) 579
TatI WGTACW 3 cut(s) 81, 541, 822
TauI GCSGC 1 cut(s) 1001
TfiI GAWTC 4 cut(s) 470, 523, 668, 957
Tru1I TTAA 4 cut(s) 18, 201, 447, 1149
Tru9I TTAA 4 cut(s) 18, 201, 447, 1149
TscAI CASTG 3 cut(s) 685, 912, 1034
TseFI GTSAC 3 cut(s) 386, 638, 797
TseI GCWGC 5 cut(s) 173, 773, 1007, 1010, 1013
Tsp45I GTSAC 3 cut(s) 386, 638, 797
TspDTI ATGAA 4 cut(s) 205, 450, 584, 1025
TspRI CASTG 3 cut(s) 685, 912, 1034
Van91I CCANNNNNTGG 2 cut(s) 137, 338
Vha464I CTTAAG 1 cut(s) 200
VpaK11BI GGWCC 2 cut(s) 140, 716
XagI CCTNNNNNAGG 1 cut(s) 69
XceI RCATGY 1 cut(s) 186
XcmI CCANNNNNNNNNTGG 1 cut(s) 514
XmnI GAANNNNTTC 1 cut(s) 378
XspI CTAG 5 cut(s) 192, 237, 327, 762, 1076
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.