Rh5AG416700

Belongs to the AAA ATPase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5A
OG0017005
Physical Location & Seq
Forward (+)
71894752 .. 71911557
16806 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5AG416700.1

Sequence Viewer

Length: 1272 bp
ATGAGGATGATTTGGGTGGCTTGGCAGACTAGGTCGTGCCAGACTGTCGGTGGGGAGCGGTGGAGGTGGGATGAGCGGCTGTCTCAGAGCCTGAGCAGAAACGAAGAAGAAGAGAAGAAAACTCAAGCAGTTAAGGGTGAGAATGCGGTGATTGCCCTTTTTGGGGTGGCGAAATACAAGCAGCCATCTGTTATCTTCGTCGAAAATATTGACTGTATTTTATCAGCGTGTGAAAGTGAAGGTCGGGATGATAAATTTATGCGGACCAGAAATAGATTTATGAAGGAGAAACAGTTGGTTGAATGGGAGGGTGGACAGATTCTTGTGATTGGTTCAAGTACTAGACCGGAAGTGCTTTCCCAAGAAGTGTTAAACGTGTTTCGGAATAGGTTATATCTACCCTTGCCCTCGTTCAAAGCTAGGTGGTCCATTATCGAGGGATTTTTGGAGAGAGGAGGACTGTTTCGCCTGTCATGGTCTGACTTGCATGATATTTGCCACATGACTGCAGGTTACTCTGCTACGGAATTAGAGGCGAGTGGTGCAATGAAAGTGAGATGTGTTGACATCCTTCGTGATATCAAGGGGAATCTTCCTGGCATGTTGAAGAATGTGGACCCATTTTTTTATTCTGTTTATTTGTTACCGCATGAACAAAAAGATGCCGCGGGGCGTATGTCCCTGTGGCATCTTTTGCAACCAACACTCTTTTTTGTTTCTCCAAGTTGCTGGTGCCCCCAGGCAAATTTGTTGCTGTTTGGTCCGGAGGGATTTGGTAAAATGTTGTTCGCCCAAGGAATTGCGGGGGAAGCGAAAGCCACGTTTTTCCATTATAATGCTGCTTTGTCGGATACTGAAAATGGTGAGAATGCGGTGATTGCCCTTTTTGGGGTGGCGAAATGCAAGCAGCCATCTGTTATCTTCGTCGAAAATATTGACTGTATTTTATCAGCGTGTGAAAGTGAAGGTCGGGATGATAAATTTATGCGGACCAGAAATAGATTTATGAAGGAGAAACAGTTGGTTGAATGGGAGGGTGGACAGATTCTTGTGATTGGTTCAAGTACTAGACCGGAAGTGCTTTCCCAAGAAGTGTTAAACGTGTTTCGGAATAGGTTATATCTACCCTTGCCCTCGTTCAAAGCTAGGTGGTCCATTATCGAGGGATTTTTGGAGAGAGGAGGACTGTTTCGCCTGTCATGGTCTGACTTGCATGATATTTGCCACATGACTGCAGGTATTGCAGGGGAACAAGGCAATTGTAGTCGATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000003 GO:0000018 GO:0000228 GO:0000280 GO:0000287 GO:0001503 GO:0001649 GO:0003674 GO:0003824 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005694 GO:0005737 GO:0006139 GO:0006163 GO:0006282 GO:0006725 GO:0006753 GO:0006793 GO:0006796 GO:0006807 GO:0006996 GO:0007049 GO:0007140 GO:0007276 GO:0008150 GO:0008152 GO:0008283 GO:0009117 GO:0009123 GO:0009126 GO:0009141 GO:0009144 GO:0009150 GO:0009161 GO:0009167 GO:0009199 GO:0009205 GO:0009259 GO:0009314 GO:0009628 GO:0009892 GO:0009987 GO:0010212 GO:0010520 GO:0010564 GO:0010569 GO:0010605 GO:0010639 GO:0010941 GO:0010948 GO:0016043 GO:0016787 GO:0017144 GO:0019219 GO:0019222 GO:0019637 GO:0019693 GO:0019953 GO:0022402 GO:0022412 GO:0022414 GO:0030154 GO:0031323 GO:0031324 GO:0031974 GO:0031981 GO:0032501 GO:0032502 GO:0032504 GO:0033043 GO:0033687 GO:0034641 GO:0040020 GO:0042981 GO:0043066 GO:0043067 GO:0043069 GO:0043167 GO:0043169 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044237 GO:0044238 GO:0044281 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044464 GO:0044703 GO:0045128 GO:0045786 GO:0045835 GO:0045910 GO:0045934 GO:0046034 GO:0046483 GO:0046872 GO:0048232 GO:0048285 GO:0048471 GO:0048519 GO:0048523 GO:0048583 GO:0048609 GO:0048869 GO:0050789 GO:0050794 GO:0050896 GO:0051052 GO:0051053 GO:0051128 GO:0051129 GO:0051171 GO:0051172 GO:0051321 GO:0051445 GO:0051447 GO:0051704 GO:0051716 GO:0051726 GO:0051783 GO:0051784 GO:0055086 GO:0060255 GO:0060548 GO:0060631 GO:0065007 GO:0070013 GO:0071214 GO:0071478 GO:0071479 GO:0071704 GO:0071840 GO:0072521 GO:0080090 GO:0080134 GO:0080135 GO:0104004 GO:0110029 GO:0140013 GO:1901135 GO:1901360 GO:1901564 GO:1903046 GO:2000241 GO:2000242 GO:2000779 GO:2001020
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
AAA Vps4_C

Protein Analysis

423

Amino Acids

48.11

Weight (kDa)

7.03

Isoelectric Point (pI)

53.14

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
AAA PF00004 43 - 134 4.9e-07 ATPase family associated with various cellular activities (AAA)
AAA PF00004 250 - 376 7.7e-15 ATPase family associated with various cellular activities (AAA)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 834
Acc36I ACCTGC 2 cut(s) 500, 1226
AccB1I GGYRCC 1 cut(s) 732
AccBSI CCGCTC 2 cut(s) 58, 76
AccII CGCG 1 cut(s) 668
AccIII TCCGGA 1 cut(s) 763
AcsI RAATTY 3 cut(s) 254, 745, 980
AfaI GTAC 2 cut(s) 340, 1066
AfiI CCNNNNNNNGG 4 cut(s) 162, 163, 888, 889
AflIII ACRYGT 2 cut(s) 375, 1101
AgsI TTSAA 7 cut(s) 302, 336, 415, 607, 1028, 1062, 1141
AjnI CCWGG 2 cut(s) 595, 738
AluBI AGCT 2 cut(s) 419, 1145
AluI AGCT 2 cut(s) 419, 1145
Alw26I GTCTC 1 cut(s) 87
AlwNI CAGNNNCTG 1 cut(s) 91
Aor13HI TCCGGA 1 cut(s) 763
ApeKI GCWGC 3 cut(s) 181, 839, 907
ApoI RAATTY 3 cut(s) 254, 745, 980
AspS9I GGNCC 6 cut(s) 264, 426, 616, 761, 990, 1152
AsuHPI GGTGA 4 cut(s) 149, 160, 875, 886
AvaII GGWCC 6 cut(s) 264, 426, 616, 761, 990, 1152
BaeGI GKGCMC 1 cut(s) 737
BanI GGYRCC 1 cut(s) 732
BbvI GCAGC 3 cut(s) 193, 826, 919
BccI CCATC 2 cut(s) 193, 919
BciT130I CCWGG 2 cut(s) 597, 740
BciVI GTATCC 1 cut(s) 844
BcoDI GTCTC 1 cut(s) 87
BfaI CTAG 5 cut(s) 30, 342, 420, 1068, 1146
BfmI CTRYAG 2 cut(s) 507, 1233
BfuAI ACCTGC 2 cut(s) 500, 1226
BfuI GTATCC 1 cut(s) 844
BisI GCNGC 5 cut(s) 77, 182, 666, 840, 908
BlsI GCNGC 5 cut(s) 78, 183, 667, 841, 909
BmcAI AGTACT 2 cut(s) 340, 1066
Bme1390I CCNGG 2 cut(s) 597, 740
Bme18I GGWCC 6 cut(s) 264, 426, 616, 761, 990, 1152
BmgT120I GGNCC 6 cut(s) 264, 426, 616, 761, 990, 1152
BmiI GGNNCC 2 cut(s) 618, 734
BmrFI CCNGG 2 cut(s) 597, 740
BmsI GCATC 2 cut(s) 652, 697
Bpu10I CCTNAGC 1 cut(s) 92
BpuEI CTTGAG 1 cut(s) 108
BsaJI CCNNGG 3 cut(s) 666, 738, 793
BsaWI WCCGGW 3 cut(s) 346, 763, 1072
BsaXI ACNNNNNCTCC 4 cut(s) 278, 308, 1004, 1034
Bsc4I CCNNNNNNNGG 4 cut(s) 162, 163, 888, 889
Bse3DI GCAATG 1 cut(s) 552
BseAI TCCGGA 1 cut(s) 763
BseBI CCWGG 2 cut(s) 597, 740
BseDI CCNNGG 3 cut(s) 666, 738, 793
BseGI GGATG 5 cut(s) 12, 76, 253, 567, 979
BseLI CCNNNNNNNGG 4 cut(s) 162, 163, 888, 889
BseMI GCAATG 1 cut(s) 552
BseMII CTCAG 2 cut(s) 83, 98
BseRI GAGGAG 2 cut(s) 468, 1194
BseSI GKGCMC 1 cut(s) 737
BseXI GCAGC 3 cut(s) 193, 826, 919
Bsh1236I CGCG 1 cut(s) 668
BshNI GGYRCC 1 cut(s) 732
BsiSI CCGG 3 cut(s) 347, 764, 1073
BslFI GGGAC 1 cut(s) 664
BslI CCNNNNNNNGG 4 cut(s) 162, 163, 888, 889
BsmAI GTCTC 1 cut(s) 87
BsmFI GGGAC 1 cut(s) 664
BsmI GAATGC 2 cut(s) 148, 874
Bsp1286I GDGCHC 1 cut(s) 737
Bsp13I TCCGGA 1 cut(s) 763
BspCNI CTCAG 2 cut(s) 84, 97
BspEI TCCGGA 1 cut(s) 763
BspFNI CGCG 1 cut(s) 668
BspLI GGNNCC 2 cut(s) 618, 734
BspMAI CTGCAG 2 cut(s) 511, 1237
BspMI ACCTGC 2 cut(s) 500, 1226
BspT107I GGYRCC 1 cut(s) 732
BsrBI CCGCTC 2 cut(s) 58, 76
BsrDI GCAATG 1 cut(s) 552
BssECI CCNNGG 3 cut(s) 666, 738, 793
BssT1I CCWWGG 1 cut(s) 793
Bst2UI CCWGG 2 cut(s) 597, 740
Bst4CI ACNGT 7 cut(s) 46, 215, 294, 462, 941, 1020, 1188
Bst6I CTCTTC 1 cut(s) 105
BstAPI GCANNNNNTGC 2 cut(s) 694, 1241
BstC8I GCNNGC 1 cut(s) 905
BstDEI CTNAG 2 cut(s) 84, 92
BstDSI CCRYGG 1 cut(s) 666
BstF5I GGATG 5 cut(s) 12, 76, 253, 567, 979
BstFNI CGCG 1 cut(s) 668
BstMAI GTCTC 1 cut(s) 87
BstMWI GCNNNNNNNGC 6 cut(s) 152, 542, 694, 809, 878, 1241
BstNI CCWGG 2 cut(s) 597, 740
BstNSI RCATGY 1 cut(s) 604
BstSCI CCNGG 2 cut(s) 595, 738
BstSFI CTRYAG 2 cut(s) 507, 1233
BstSLI GKGCMC 1 cut(s) 737
BstUI CGCG 1 cut(s) 668
BstV1I GCAGC 3 cut(s) 193, 826, 919
BstXI CCANNNNNNTGG 1 cut(s) 729
BsuI GTATCC 1 cut(s) 844
BtgI CCRYGG 1 cut(s) 666
BtsCI GGATG 5 cut(s) 12, 76, 253, 567, 979
BveI ACCTGC 2 cut(s) 500, 1226
Cac8I GCNNGC 1 cut(s) 905
CaiI CAGNNNCTG 1 cut(s) 91
Cfr13I GGNCC 6 cut(s) 264, 426, 616, 761, 990, 1152
Cfr42I CCGCGG 1 cut(s) 669
Csp6I GTAC 2 cut(s) 339, 1065
CviAII CATG 8 cut(s) 474, 488, 502, 601, 650, 1200, 1214, 1228
CviJI RGCY 8 cut(s) 20, 79, 90, 184, 419, 818, 910, 1145
CviKI_1 RGCY 8 cut(s) 20, 79, 90, 184, 419, 818, 910, 1145
CviQI GTAC 2 cut(s) 339, 1065
DdeI CTNAG 2 cut(s) 84, 92
Eam1104I CTCTTC 1 cut(s) 105
EarI CTCTTC 1 cut(s) 105
Eco130I CCWWGG 1 cut(s) 793
Eco32I GATATC 1 cut(s) 580
Eco47I GGWCC 6 cut(s) 264, 426, 616, 761, 990, 1152
EcoRII CCWGG 2 cut(s) 595, 738
EcoRV GATATC 1 cut(s) 580
EcoT14I CCWWGG 1 cut(s) 793
ErhI CCWWGG 1 cut(s) 793
FaeI CATG 8 cut(s) 477, 491, 505, 604, 653, 1203, 1217, 1231
FaqI GGGAC 1 cut(s) 664
FatI CATG 8 cut(s) 473, 487, 501, 600, 649, 1199, 1213, 1227
FauI CCCGC 2 cut(s) 661, 796
Fnu4HI GCNGC 5 cut(s) 77, 182, 666, 840, 908
FokI GGATG 5 cut(s) 19, 83, 260, 554, 986
Fsp4HI GCNGC 5 cut(s) 77, 182, 666, 840, 908
FspBI CTAG 5 cut(s) 30, 342, 420, 1068, 1146
GluI GCNGC 5 cut(s) 77, 182, 666, 840, 908
HapII CCGG 3 cut(s) 347, 764, 1073
Hin1II CATG 8 cut(s) 477, 491, 505, 604, 653, 1203, 1217, 1231
HincII GTYRAC 1 cut(s) 565
HindII GTYRAC 1 cut(s) 565
HinfI GANTC 3 cut(s) 319, 589, 1045
HpaII CCGG 3 cut(s) 347, 764, 1073
HphI GGTGA 4 cut(s) 149, 160, 875, 886
Hpy166II GTNNAC 4 cut(s) 314, 565, 616, 1040
Hpy188I TCNGA 6 cut(s) 87, 384, 481, 850, 1110, 1207
Hpy188III TCNNGA 4 cut(s) 245, 575, 764, 971
Hpy8I GTNNAC 4 cut(s) 314, 565, 616, 1040
Hpy99I CGWCG 2 cut(s) 203, 929
HpyAV CCTTC 5 cut(s) 233, 277, 581, 959, 1003
HpyCH4III ACNGT 7 cut(s) 46, 215, 294, 462, 941, 1020, 1188
HpyCH4IV ACGT 3 cut(s) 375, 821, 1101
HpyCH4V TGCA 8 cut(s) 487, 509, 545, 697, 903, 1213, 1235, 1244
HpyF10VI GCNNNNNNNGC 6 cut(s) 152, 542, 694, 809, 878, 1241
HpyF3I CTNAG 2 cut(s) 84, 92
HpySE526I ACGT 3 cut(s) 375, 821, 1101
Hsp92II CATG 8 cut(s) 477, 491, 505, 604, 653, 1203, 1217, 1231
Kpn2I TCCGGA 1 cut(s) 763
KspI CCGCGG 1 cut(s) 669
LmnI GCTCC 1 cut(s) 55
Lsp1109I GCAGC 3 cut(s) 193, 826, 919
LweI GCATC 2 cut(s) 652, 697
MaeI CTAG 5 cut(s) 30, 342, 420, 1068, 1146
MaeII ACGT 3 cut(s) 375, 821, 1101
MaeIII GTNAC 2 cut(s) 512, 642
MbiI CCGCTC 2 cut(s) 58, 76
MboII GAAGA 8 cut(s) 116, 119, 122, 127, 187, 584, 619, 913
MfeI CAATTG 1 cut(s) 1258
MhlI GDGCHC 1 cut(s) 737
MluCI AATT 6 cut(s) 254, 527, 745, 798, 980, 1258
MmeI TCCRAC 1 cut(s) 828
MroI TCCGGA 1 cut(s) 763
MseI TTAA 3 cut(s) 132, 371, 1097
MslI CAYNNNNRTG 1 cut(s) 834
MspA1I CMGCKG 1 cut(s) 668
MspI CCGG 3 cut(s) 347, 764, 1073
MspR9I CCNGG 2 cut(s) 597, 740
MunI CAATTG 1 cut(s) 1258
Mva1269I GAATGC 2 cut(s) 148, 874
MvaI CCWGG 2 cut(s) 597, 740
MvnI CGCG 1 cut(s) 668
MwoI GCNNNNNNNGC 6 cut(s) 152, 542, 694, 809, 878, 1241
NlaIII CATG 8 cut(s) 477, 491, 505, 604, 653, 1203, 1217, 1231
NlaIV GGNNCC 2 cut(s) 618, 734
NspI RCATGY 1 cut(s) 604
PctI GAATGC 2 cut(s) 148, 874
PfeI GAWTC 3 cut(s) 319, 589, 1045
PflFI GACNNNGTC 1 cut(s) 31
PkrI GCNGC 5 cut(s) 78, 183, 667, 841, 909
PsiI TTATAA 1 cut(s) 834
Psp6I CCWGG 2 cut(s) 595, 738
PspGI CCWGG 2 cut(s) 595, 738
PspN4I GGNNCC 2 cut(s) 618, 734
PspPI GGNCC 6 cut(s) 264, 426, 616, 761, 990, 1152
PstI CTGCAG 2 cut(s) 511, 1237
PstNI CAGNNNCTG 1 cut(s) 91
PsyI GACNNNGTC 1 cut(s) 31
RsaI GTAC 2 cut(s) 340, 1066
RsaNI GTAC 2 cut(s) 339, 1065
RseI CAYNNNNRTG 1 cut(s) 834
SacII CCGCGG 1 cut(s) 669
SaqAI TTAA 3 cut(s) 132, 371, 1097
SatI GCNGC 5 cut(s) 77, 182, 666, 840, 908
Sau96I GGNCC 6 cut(s) 264, 426, 616, 761, 990, 1152
ScaI AGTACT 2 cut(s) 340, 1066
ScrFI CCNGG 2 cut(s) 597, 740
SduI GDGCHC 1 cut(s) 737
SfaNI GCATC 2 cut(s) 652, 697
SfcI CTRYAG 2 cut(s) 507, 1233
Sfr303I CCGCGG 1 cut(s) 669
SgrBI CCGCGG 1 cut(s) 669
SinI GGWCC 6 cut(s) 264, 426, 616, 761, 990, 1152
SmiMI CAYNNNNRTG 1 cut(s) 834
SmlI CTYRAG 1 cut(s) 123
SmoI CTYRAG 1 cut(s) 123
Sse9I AATT 6 cut(s) 254, 527, 745, 798, 980, 1258
SspI AATATT 2 cut(s) 208, 934
SspMI CTAG 5 cut(s) 30, 342, 420, 1068, 1146
StyD4I CCNGG 2 cut(s) 595, 738
StyI CCWWGG 1 cut(s) 793
TaaI ACNGT 7 cut(s) 46, 215, 294, 462, 941, 1020, 1188
TaiI ACGT 3 cut(s) 378, 824, 1104
TaqI TCGA 5 cut(s) 201, 435, 927, 1161, 1267
TasI AATT 6 cut(s) 254, 527, 745, 798, 980, 1258
TatI WGTACW 2 cut(s) 338, 1064
TauI GCSGC 2 cut(s) 79, 668
TfiI GAWTC 3 cut(s) 319, 589, 1045
Tru1I TTAA 3 cut(s) 132, 371, 1097
Tru9I TTAA 3 cut(s) 132, 371, 1097
TseI GCWGC 3 cut(s) 181, 839, 907
TspDTI ATGAA 4 cut(s) 296, 563, 666, 1022
TspGWI ACGGA 1 cut(s) 539
Tth111I GACNNNGTC 1 cut(s) 31
VpaK11BI GGWCC 6 cut(s) 264, 426, 616, 761, 990, 1152
XapI RAATTY 3 cut(s) 254, 745, 980
XceI RCATGY 1 cut(s) 604
XcmI CCANNNNNNNNNTGG 1 cut(s) 47
XspI CTAG 5 cut(s) 30, 342, 420, 1068, 1146
ZrmI AGTACT 2 cut(s) 340, 1066
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.