Rh5AG409400

Belongs to the AAA ATPase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5A
OG0017005
Physical Location & Seq
Reverse (-)
70756882 .. 70762695
5814 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5AG409400.1

Sequence Viewer

Length: 636 bp
ATGAATTGGAATGATGGTCGCCGAGTTTCTGTAGAATCCATCTCAGATGAATTGAAGTCTCCTCTCAGTTTTTGGAAAGCTTATTCTCCTGACTTCCTGAGTGGTAAAATGGAAGTGAGATGTGTTGACATCCTTCGTGATATCAACGGCAATCTTCCTGGCATGTTGAAGAATGTGGACCTCTTTTTTATTCTGCTTATTTGTAACCGCATGAACAATGGATCTTTGTGGACCGAAAGTTGCCGTGGGGCGTATGTCCCTGTGGCATCTTTTGCAACCATCACTCTTTTGTGTTTCTCCAAGTTGCTGGTGCCCCCAGGCAAATTTGTTGCTGTTTGGTCCGGAGGTTACTCTGGTACGGAATTAGAGGCGGTAGTCAAGCATGCGGTATCTCTCAGTCCATTGTCGAATTTCGATTCAAAATTTTCCGATCACCATTTTTTGGCTCAGGAAACGTTGCTTGTGATGTTGCCGCCATTGACTACAGAGGATTTTCGCCGAGCTACGTCACTTCTTGCGCCATCTGTTTCGGCAGATGATGTCTCGGCTTATGAGGTTTGGGATAAGAAAAACGGCTCTGGAACTCTGAGGAAGAGGAAGAGCCGAACAAGGCCGAGTATGAGGAGAAATGTTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000003 GO:0000018 GO:0000228 GO:0000280 GO:0000287 GO:0001503 GO:0001649 GO:0003674 GO:0003824 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005694 GO:0005737 GO:0006139 GO:0006163 GO:0006282 GO:0006725 GO:0006753 GO:0006793 GO:0006796 GO:0006807 GO:0006996 GO:0007049 GO:0007140 GO:0007276 GO:0008150 GO:0008152 GO:0008283 GO:0009117 GO:0009123 GO:0009126 GO:0009141 GO:0009144 GO:0009150 GO:0009161 GO:0009167 GO:0009199 GO:0009205 GO:0009259 GO:0009314 GO:0009628 GO:0009892 GO:0009987 GO:0010212 GO:0010520 GO:0010564 GO:0010569 GO:0010605 GO:0010639 GO:0010941 GO:0010948 GO:0016043 GO:0016787 GO:0017144 GO:0019219 GO:0019222 GO:0019637 GO:0019693 GO:0019953 GO:0022402 GO:0022412 GO:0022414 GO:0030154 GO:0031323 GO:0031324 GO:0031974 GO:0031981 GO:0032501 GO:0032502 GO:0032504 GO:0033043 GO:0033687 GO:0034641 GO:0040020 GO:0042981 GO:0043066 GO:0043067 GO:0043069 GO:0043167 GO:0043169 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044237 GO:0044238 GO:0044281 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044464 GO:0044703 GO:0045128 GO:0045786 GO:0045835 GO:0045910 GO:0045934 GO:0046034 GO:0046483 GO:0046872 GO:0048232 GO:0048285 GO:0048471 GO:0048519 GO:0048523 GO:0048583 GO:0048609 GO:0048869 GO:0050789 GO:0050794 GO:0050896 GO:0051052 GO:0051053 GO:0051128 GO:0051129 GO:0051171 GO:0051172 GO:0051321 GO:0051445 GO:0051447 GO:0051704 GO:0051716 GO:0051726 GO:0051783 GO:0051784 GO:0055086 GO:0060255 GO:0060548 GO:0060631 GO:0065007 GO:0070013 GO:0071214 GO:0071478 GO:0071479 GO:0071704 GO:0071840 GO:0072521 GO:0080090 GO:0080134 GO:0080135 GO:0104004 GO:0110029 GO:0140013 GO:1901135 GO:1901360 GO:1901564 GO:1903046 GO:2000241 GO:2000242 GO:2000779 GO:2001020
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
AAA Vps4_C

Protein Analysis

211

Amino Acids

23.57

Weight (kDa)

9.1

Isoelectric Point (pI)

40.87

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 310
AccB7I CCANNNNNTGG 1 cut(s) 442
AccIII TCCGGA 1 cut(s) 341
AciI CCGC 4 cut(s) 208, 371, 386, 473
AclI AACGTT 1 cut(s) 455
AclWI GGATC 1 cut(s) 229
AcsI RAATTY 3 cut(s) 323, 409, 422
AfaI GTAC 1 cut(s) 358
AfiI CCNNNNNNNGG 1 cut(s) 442
AgsI TTSAA 3 cut(s) 55, 169, 420
AjnI CCWGG 2 cut(s) 157, 316
AluBI AGCT 2 cut(s) 80, 503
AluI AGCT 2 cut(s) 80, 503
Alw26I GTCTC 2 cut(s) 63, 547
AlwI GGATC 1 cut(s) 229
Aor13HI TCCGGA 1 cut(s) 341
AoxI GGCC 1 cut(s) 611
ApoI RAATTY 3 cut(s) 323, 409, 422
AspLEI GCGC 1 cut(s) 520
AspS9I GGNCC 3 cut(s) 178, 231, 339
AsuHPI GGTGA 1 cut(s) 425
AvaII GGWCC 3 cut(s) 178, 231, 339
BaeGI GKGCMC 1 cut(s) 315
BanI GGYRCC 1 cut(s) 310
BccI CCATC 4 cut(s) 8, 47, 287, 529
BceAI ACGGC 3 cut(s) 163, 228, 589
BciT130I CCWGG 2 cut(s) 159, 318
BcoDI GTCTC 2 cut(s) 63, 547
BfmI CTRYAG 2 cut(s) 30, 483
BisI GCNGC 1 cut(s) 473
BlsI GCNGC 1 cut(s) 474
Bme1390I CCNGG 2 cut(s) 159, 318
Bme18I GGWCC 3 cut(s) 178, 231, 339
BmgT120I GGNCC 3 cut(s) 178, 231, 339
BmiI GGNNCC 1 cut(s) 312
BmrFI CCNGG 2 cut(s) 159, 318
BmsI GCATC 1 cut(s) 275
Bpu10I CCTNAGC 1 cut(s) 447
BsaJI CCNNGG 2 cut(s) 244, 316
BsaWI WCCGGW 1 cut(s) 341
Bsc4I CCNNNNNNNGG 1 cut(s) 442
BseAI TCCGGA 1 cut(s) 341
BseBI CCWGG 2 cut(s) 159, 318
BseDI CCNNGG 2 cut(s) 244, 316
BseGI GGATG 1 cut(s) 129
BseLI CCNNNNNNNGG 1 cut(s) 442
BseMII CTCAG 6 cut(s) 57, 79, 89, 409, 461, 578
BseRI GAGGAG 1 cut(s) 51
BseSI GKGCMC 1 cut(s) 315
BshFI GGCC 1 cut(s) 613
BshNI GGYRCC 1 cut(s) 310
BsiSI CCGG 1 cut(s) 342
BslFI GGGAC 1 cut(s) 242
BslI CCNNNNNNNGG 1 cut(s) 442
BsmAI GTCTC 2 cut(s) 63, 547
BsmFI GGGAC 1 cut(s) 242
BsnI GGCC 1 cut(s) 613
Bsp1286I GDGCHC 1 cut(s) 315
Bsp13I TCCGGA 1 cut(s) 341
Bsp143I GATC 2 cut(s) 221, 430
BspACI CCGC 4 cut(s) 208, 371, 386, 473
BspANI GGCC 1 cut(s) 613
BspCNI CTCAG 6 cut(s) 56, 78, 90, 408, 460, 579
BspEI TCCGGA 1 cut(s) 341
BspLI GGNNCC 1 cut(s) 312
BspPI GGATC 1 cut(s) 229
BspQI GCTCTTC 1 cut(s) 593
BspT107I GGYRCC 1 cut(s) 310
BssECI CCNNGG 2 cut(s) 244, 316
BssMI GATC 2 cut(s) 221, 430
Bst2UI CCWGG 2 cut(s) 159, 318
Bst6I CTCTTC 2 cut(s) 587, 593
BstAPI GCANNNNNTGC 1 cut(s) 272
BstC8I GCNNGC 1 cut(s) 384
BstDEI CTNAG 6 cut(s) 43, 65, 98, 395, 447, 587
BstDSI CCRYGG 1 cut(s) 244
BstF5I GGATG 1 cut(s) 129
BstHHI GCGC 1 cut(s) 520
BstKTI GATC 2 cut(s) 224, 433
BstMAI GTCTC 2 cut(s) 63, 547
BstMBI GATC 2 cut(s) 221, 430
BstMWI GCNNNNNNNGC 1 cut(s) 272
BstNI CCWGG 2 cut(s) 159, 318
BstNSI RCATGY 2 cut(s) 166, 386
BstSCI CCNGG 2 cut(s) 157, 316
BstSFI CTRYAG 2 cut(s) 30, 483
BstSLI GKGCMC 1 cut(s) 315
BstX2I RGATCY 1 cut(s) 221
BstXI CCANNNNNNTGG 1 cut(s) 307
BstYI RGATCY 1 cut(s) 221
BsuRI GGCC 1 cut(s) 613
BtgI CCRYGG 1 cut(s) 244
BtsCI GGATG 1 cut(s) 129
Cac8I GCNNGC 1 cut(s) 384
CfoI GCGC 1 cut(s) 520
Cfr13I GGNCC 3 cut(s) 178, 231, 339
Csp6I GTAC 1 cut(s) 357
CviAII CATG 3 cut(s) 163, 211, 383
CviJI RGCY 7 cut(s) 80, 446, 503, 548, 576, 603, 613
CviKI_1 RGCY 7 cut(s) 80, 446, 503, 548, 576, 603, 613
CviQI GTAC 1 cut(s) 357
DdeI CTNAG 6 cut(s) 43, 65, 98, 395, 447, 587
DpnI GATC 2 cut(s) 223, 432
DpnII GATC 2 cut(s) 221, 430
Eam1104I CTCTTC 2 cut(s) 587, 593
EarI CTCTTC 2 cut(s) 587, 593
Eco32I GATATC 1 cut(s) 142
Eco47I GGWCC 3 cut(s) 178, 231, 339
EcoRII CCWGG 2 cut(s) 157, 316
EcoRV GATATC 1 cut(s) 142
FaeI CATG 3 cut(s) 166, 214, 386
FaiI YATR 6 cut(s) 164, 212, 255, 384, 552, 620
FaqI GGGAC 1 cut(s) 242
FatI CATG 3 cut(s) 162, 210, 382
Fnu4HI GCNGC 1 cut(s) 473
FokI GGATG 1 cut(s) 116
Fsp4HI GCNGC 1 cut(s) 473
GlaI GCGC 1 cut(s) 519
GluI GCNGC 1 cut(s) 473
HaeIII GGCC 1 cut(s) 613
HapII CCGG 1 cut(s) 342
HhaI GCGC 1 cut(s) 520
Hin1II CATG 3 cut(s) 166, 214, 386
Hin6I GCGC 1 cut(s) 518
HinP1I GCGC 1 cut(s) 518
HincII GTYRAC 1 cut(s) 127
HindII GTYRAC 1 cut(s) 127
HindIII AAGCTT 1 cut(s) 78
HinfI GANTC 2 cut(s) 35, 416
HpaII CCGG 1 cut(s) 342
HphI GGTGA 1 cut(s) 425
Hpy166II GTNNAC 3 cut(s) 127, 178, 231
Hpy188I TCNGA 3 cut(s) 46, 430, 588
Hpy188III TCNNGA 6 cut(s) 89, 97, 137, 342, 449, 579
Hpy8I GTNNAC 3 cut(s) 127, 178, 231
HpyAV CCTTC 1 cut(s) 143
HpyCH4IV ACGT 2 cut(s) 455, 506
HpyCH4V TGCA 1 cut(s) 275
HpyF10VI GCNNNNNNNGC 1 cut(s) 272
HpyF3I CTNAG 6 cut(s) 43, 65, 98, 395, 447, 587
HpySE526I ACGT 2 cut(s) 455, 506
Hsp92II CATG 3 cut(s) 166, 214, 386
HspAI GCGC 1 cut(s) 518
Kpn2I TCCGGA 1 cut(s) 341
Kzo9I GATC 2 cut(s) 221, 430
LguI GCTCTTC 1 cut(s) 593
LweI GCATC 1 cut(s) 275
MaeII ACGT 2 cut(s) 455, 506
MaeIII GTNAC 3 cut(s) 203, 347, 507
MalI GATC 2 cut(s) 223, 432
MboI GATC 2 cut(s) 221, 430
MboII GAAGA 4 cut(s) 146, 181, 604, 610
MflI RGATCY 1 cut(s) 221
MhlI GDGCHC 1 cut(s) 315
MluCI AATT 6 cut(s) 4, 50, 323, 362, 409, 422
MnlI CCTC 9 cut(s) 72, 191, 338, 361, 481, 547, 582, 588, 615
MroI TCCGGA 1 cut(s) 341
MspI CCGG 1 cut(s) 342
MspR9I CCNGG 2 cut(s) 159, 318
MvaI CCWGG 2 cut(s) 159, 318
MwoI GCNNNNNNNGC 1 cut(s) 272
NdeII GATC 2 cut(s) 221, 430
NlaIII CATG 3 cut(s) 166, 214, 386
NlaIV GGNNCC 1 cut(s) 312
NmeAIII GCCGAG 3 cut(s) 47, 524, 524
NmuCI GTSAC 1 cut(s) 507
NspI RCATGY 2 cut(s) 166, 386
PaeI GCATGC 1 cut(s) 386
PciSI GCTCTTC 1 cut(s) 593
PfeI GAWTC 2 cut(s) 35, 416
PflMI CCANNNNNTGG 1 cut(s) 442
PkrI GCNGC 1 cut(s) 474
Psp1406I AACGTT 1 cut(s) 455
Psp6I CCWGG 2 cut(s) 157, 316
PspGI CCWGG 2 cut(s) 157, 316
PspN4I GGNNCC 1 cut(s) 312
PspPI GGNCC 3 cut(s) 178, 231, 339
PsuI RGATCY 1 cut(s) 221
RsaI GTAC 1 cut(s) 358
RsaNI GTAC 1 cut(s) 357
SapI GCTCTTC 1 cut(s) 593
SatI GCNGC 1 cut(s) 473
Sau3AI GATC 2 cut(s) 221, 430
Sau96I GGNCC 3 cut(s) 178, 231, 339
ScrFI CCNGG 2 cut(s) 159, 318
SduI GDGCHC 1 cut(s) 315
SetI ASST 7 cut(s) 82, 183, 349, 458, 505, 509, 558
SfaNI GCATC 1 cut(s) 275
SfcI CTRYAG 2 cut(s) 30, 483
SinI GGWCC 3 cut(s) 178, 231, 339
SphI GCATGC 1 cut(s) 386
Sse9I AATT 6 cut(s) 4, 50, 323, 362, 409, 422
SsiI CCGC 4 cut(s) 208, 371, 386, 473
StyD4I CCNGG 2 cut(s) 157, 316
TaiI ACGT 2 cut(s) 458, 509
TaqI TCGA 2 cut(s) 407, 414
TaqII GACCGA 1 cut(s) 248
TasI AATT 6 cut(s) 4, 50, 323, 362, 409, 422
TauI GCSGC 1 cut(s) 475
TfiI GAWTC 2 cut(s) 35, 416
TseFI GTSAC 1 cut(s) 507
Tsp45I GTSAC 1 cut(s) 507
TspDTI ATGAA 3 cut(s) 17, 63, 227
TspGWI ACGGA 1 cut(s) 374
Van91I CCANNNNNTGG 1 cut(s) 442
VpaK11BI GGWCC 3 cut(s) 178, 231, 339
XapI RAATTY 3 cut(s) 323, 409, 422
XceI RCATGY 2 cut(s) 166, 386
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.