Rh5CG446400

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5C
OG0017005
Physical Location & Seq
Forward (+)
61937861 .. 61938225
365 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5CG446400.1

Sequence Viewer

Length: 333 bp
ATGAGCGATAGCGAAAGATCTACTGATGTGAACCTGGTATGGGTTCTAGGTGGTGATGAGAAGACGAGATTTCAGCTATGGAGAAGGGATTTTGTGTTTGCGTTGATGTTGTGTATCCCAACGCCACCGCACCGACACAAGACAAAGCCAACCACACCAGAAGATGGCCGACATCCCAGATCGAAACCAGTGAAGAATCGGAGACCCACTGGGCTCGACACCTCTAAGAGATCGAGAATCCGGCCACTGCCACTCCACCGTCCAAAGCCGAGACACCCTCAGCAACCAGCAAATCGAACCCCGCTGGCAAATCGCAACACGCCGGAAGACTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

110

Amino Acids

12.83

Weight (kDa)

11.41

Isoelectric Point (pI)

71.65

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 164
AciI CCGC 2 cut(s) 128, 302
AcoI YGGCCR 2 cut(s) 166, 242
AfiI CCNNNNNNNGG 2 cut(s) 40, 164
AjnI CCWGG 1 cut(s) 33
AluBI AGCT 1 cut(s) 76
AluI AGCT 1 cut(s) 76
Alw26I GTCTC 2 cut(s) 196, 265
AoxI GGCC 2 cut(s) 166, 242
AsuHPI GGTGA 1 cut(s) 65
BanII GRGCYC 1 cut(s) 216
BbsI GAAGAC 1 cut(s) 68
BbvCI CCTCAGC 1 cut(s) 279
BccI CCATC 1 cut(s) 158
BciT130I CCWGG 1 cut(s) 35
BciVI GTATCC 1 cut(s) 125
BcoDI GTCTC 2 cut(s) 196, 265
BfaI CTAG 1 cut(s) 47
BfuI GTATCC 1 cut(s) 125
BglII AGATCT 1 cut(s) 17
Bme1390I CCNGG 1 cut(s) 35
BmrFI CCNGG 1 cut(s) 35
BmrI ACTGGG 1 cut(s) 219
BmuI ACTGGG 1 cut(s) 219
BpiI GAAGAC 1 cut(s) 68
BplI GAGNNNNNCTC 2 cut(s) 262, 294
Bpu10I CCTNAGC 1 cut(s) 279
BsaI GGTCTC 1 cut(s) 196
BsaXI ACNNNNNCTCC 2 cut(s) 237, 267
Bsc4I CCNNNNNNNGG 2 cut(s) 40, 164
Bse1I ACTGG 2 cut(s) 188, 214
BseBI CCWGG 1 cut(s) 35
BseGI GGATG 1 cut(s) 172
BseLI CCNNNNNNNGG 2 cut(s) 40, 164
BseMII CTCAG 1 cut(s) 293
BseNI ACTGG 2 cut(s) 188, 214
BshFI GGCC 2 cut(s) 168, 244
BsiSI CCGG 2 cut(s) 241, 323
BslI CCNNNNNNNGG 2 cut(s) 40, 164
BsmAI GTCTC 2 cut(s) 196, 265
BsnI GGCC 2 cut(s) 168, 244
Bso31I GGTCTC 1 cut(s) 196
Bsp1286I GDGCHC 1 cut(s) 216
Bsp143I GATC 3 cut(s) 17, 179, 230
BspACI CCGC 2 cut(s) 128, 302
BspANI GGCC 2 cut(s) 168, 244
BspCNI CTCAG 1 cut(s) 292
BspTNI GGTCTC 1 cut(s) 196
BsrI ACTGG 2 cut(s) 188, 214
BssMI GATC 3 cut(s) 17, 179, 230
Bst2UI CCWGG 1 cut(s) 35
Bst4CI ACNGT 1 cut(s) 260
BstC8I GCNNGC 1 cut(s) 306
BstDEI CTNAG 2 cut(s) 225, 279
BstF5I GGATG 1 cut(s) 172
BstKTI GATC 3 cut(s) 20, 182, 233
BstMAI GTCTC 2 cut(s) 196, 265
BstMBI GATC 3 cut(s) 17, 179, 230
BstNI CCWGG 1 cut(s) 35
BstSCI CCNGG 1 cut(s) 33
BstV2I GAAGAC 1 cut(s) 68
BstX2I RGATCY 1 cut(s) 17
BstYI RGATCY 1 cut(s) 17
BsuI GTATCC 1 cut(s) 125
BsuRI GGCC 2 cut(s) 168, 244
BtsCI GGATG 1 cut(s) 172
BtsI GCAGTG 1 cut(s) 245
BtsIMutI CAGTG 3 cut(s) 195, 207, 245
Cac8I GCNNGC 1 cut(s) 306
CsiI ACCWGGT 1 cut(s) 33
CviJI RGCY 6 cut(s) 76, 148, 168, 214, 244, 268
CviKI_1 RGCY 6 cut(s) 76, 148, 168, 214, 244, 268
DdeI CTNAG 2 cut(s) 225, 279
DpnI GATC 3 cut(s) 19, 181, 232
DpnII GATC 3 cut(s) 17, 179, 230
EaeI YGGCCR 2 cut(s) 166, 242
Eco24I GRGCYC 1 cut(s) 216
Eco31I GGTCTC 1 cut(s) 196
EcoRII CCWGG 1 cut(s) 33
EcoT38I GRGCYC 1 cut(s) 216
FaiI YATR 2 cut(s) 40, 79
FauI CCCGC 1 cut(s) 309
FokI GGATG 1 cut(s) 159
FriOI GRGCYC 1 cut(s) 216
FspBI CTAG 1 cut(s) 47
HaeIII GGCC 2 cut(s) 168, 244
HapII CCGG 2 cut(s) 241, 323
HinfI GANTC 2 cut(s) 196, 237
HpaII CCGG 2 cut(s) 241, 323
HphI GGTGA 1 cut(s) 65
Hpy166II GTNNAC 1 cut(s) 31
Hpy188I TCNGA 1 cut(s) 201
Hpy188III TCNNGA 1 cut(s) 234
Hpy8I GTNNAC 1 cut(s) 31
HpyAV CCTTC 1 cut(s) 78
HpyCH4III ACNGT 1 cut(s) 260
HpyF3I CTNAG 2 cut(s) 225, 279
Kzo9I GATC 3 cut(s) 17, 179, 230
LpnPI CCDG 9 cut(s) 20, 47, 171, 190, 195, 201, 254, 290, 300
MabI ACCWGGT 1 cut(s) 33
MaeI CTAG 1 cut(s) 47
MalI GATC 3 cut(s) 19, 181, 232
MboI GATC 3 cut(s) 17, 179, 230
MboII GAAGA 3 cut(s) 73, 173, 205
MflI RGATCY 1 cut(s) 17
MhlI GDGCHC 1 cut(s) 216
MnlI CCTC 2 cut(s) 232, 288
MspA1I CMGCKG 1 cut(s) 304
MspI CCGG 2 cut(s) 241, 323
MspR9I CCNGG 1 cut(s) 35
MvaI CCWGG 1 cut(s) 35
NdeII GATC 3 cut(s) 17, 179, 230
NmeAIII GCCGAG 1 cut(s) 294
PfeI GAWTC 2 cut(s) 196, 237
PflMI CCANNNNNTGG 1 cut(s) 164
Psp6I CCWGG 1 cut(s) 33
PspGI CCWGG 1 cut(s) 33
PsuI RGATCY 1 cut(s) 17
Sau3AI GATC 3 cut(s) 17, 179, 230
ScrFI CCNGG 1 cut(s) 35
SduI GDGCHC 1 cut(s) 216
SetI ASST 4 cut(s) 36, 52, 78, 224
SexAI ACCWGGT 1 cut(s) 33
SsiI CCGC 2 cut(s) 128, 302
SspMI CTAG 1 cut(s) 47
StyD4I CCNGG 1 cut(s) 33
TaaI ACNGT 1 cut(s) 260
TaqI TCGA 4 cut(s) 182, 216, 233, 295
TfiI GAWTC 2 cut(s) 196, 237
TscAI CASTG 3 cut(s) 195, 214, 252
TspRI CASTG 3 cut(s) 195, 214, 252
Van91I CCANNNNNTGG 1 cut(s) 164
XspI CTAG 1 cut(s) 47
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.