RLG00000035651

Belongs to the AAA ATPase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr7
OG0017005
Physical Location & Seq
Forward (+)
69853984 .. 69854912
929 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000035651

Sequence Viewer

Length: 405 bp
ATGAAAGTGAGATGTGTTGACATCCTTCGTGATATCATGAGGAATCTTCCTGGCATGTTGAAGAATGTGGATCCATTTTTTATTCTGTTTATTTGTTACCGCATGAACAAGTATCCCGTTGTGAGATGGCATGAGATAGATGCCGTGGGGCGTATGTCCCTATGGCATCTTTTGCAACCAACACTCTTTTGTGTTTCTCCAAGTTGCTGGTGCCCCCAGGCAAATTTGTTGCTGTTTGGTCCGGAGGGATCTGGTAAAATGTTGTTCGCCCAAGGAATTGCGGGAGAAGCGAAAGCCACGTTTTTCCATTATAATGCTGCTTTGTCGGATACTGAAAATGTGAATGCTTTTCTGGTCTTCAGTCTTCAAATGTATGATTGCCGGCTTTTCTGGTTATCTTTGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000003 GO:0000018 GO:0000228 GO:0000280 GO:0000287 GO:0001503 GO:0001649 GO:0003674 GO:0003824 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005694 GO:0005737 GO:0006139 GO:0006163 GO:0006282 GO:0006725 GO:0006753 GO:0006793 GO:0006796 GO:0006807 GO:0006996 GO:0007049 GO:0007140 GO:0007276 GO:0008150 GO:0008152 GO:0008283 GO:0009117 GO:0009123 GO:0009126 GO:0009141 GO:0009144 GO:0009150 GO:0009161 GO:0009167 GO:0009199 GO:0009205 GO:0009259 GO:0009314 GO:0009628 GO:0009892 GO:0009987 GO:0010212 GO:0010520 GO:0010564 GO:0010569 GO:0010605 GO:0010639 GO:0010941 GO:0010948 GO:0016043 GO:0016787 GO:0017144 GO:0019219 GO:0019222 GO:0019637 GO:0019693 GO:0019953 GO:0022402 GO:0022412 GO:0022414 GO:0030154 GO:0031323 GO:0031324 GO:0031974 GO:0031981 GO:0032501 GO:0032502 GO:0032504 GO:0033043 GO:0033687 GO:0034641 GO:0040020 GO:0042981 GO:0043066 GO:0043067 GO:0043069 GO:0043167 GO:0043169 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044237 GO:0044238 GO:0044281 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044464 GO:0044703 GO:0045128 GO:0045786 GO:0045835 GO:0045910 GO:0045934 GO:0046034 GO:0046483 GO:0046872 GO:0048232 GO:0048285 GO:0048471 GO:0048519 GO:0048523 GO:0048583 GO:0048609 GO:0048869 GO:0050789 GO:0050794 GO:0050896 GO:0051052 GO:0051053 GO:0051128 GO:0051129 GO:0051171 GO:0051172 GO:0051321 GO:0051445 GO:0051447 GO:0051704 GO:0051716 GO:0051726 GO:0051783 GO:0051784 GO:0055086 GO:0060255 GO:0060548 GO:0060631 GO:0065007 GO:0070013 GO:0071214 GO:0071478 GO:0071479 GO:0071704 GO:0071840 GO:0072521 GO:0080090 GO:0080134 GO:0080135 GO:0104004 GO:0110029 GO:0140013 GO:1901135 GO:1901360 GO:1901564 GO:1903046 GO:2000241 GO:2000242 GO:2000779 GO:2001020
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
AAA Vps4_C

Protein Analysis

135

Amino Acids

15.48

Weight (kDa)

8.25

Isoelectric Point (pI)

58.32

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Style Settings
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 312
AccB1I GGYRCC 1 cut(s) 210
AccIII TCCGGA 1 cut(s) 241
AciI CCGC 2 cut(s) 100, 281
AclWI GGATC 3 cut(s) 65, 78, 256
AcsI RAATTY 1 cut(s) 223
AcuI CTGAAG 1 cut(s) 343
AgsI TTSAA 2 cut(s) 61, 368
AjnI CCWGG 2 cut(s) 49, 216
AlwI GGATC 3 cut(s) 65, 78, 256
Aor13HI TCCGGA 1 cut(s) 241
ApeKI GCWGC 1 cut(s) 317
ApoI RAATTY 1 cut(s) 223
AspS9I GGNCC 1 cut(s) 239
AvaII GGWCC 1 cut(s) 239
BaeGI GKGCMC 1 cut(s) 215
BamHI GGATCC 1 cut(s) 70
BanI GGYRCC 1 cut(s) 210
BbsI GAAGAC 2 cut(s) 349, 356
BbvI GCAGC 1 cut(s) 304
BccI CCATC 1 cut(s) 120
BceAI ACGGC 1 cut(s) 128
BciT130I CCWGG 2 cut(s) 51, 218
BciVI GTATCC 2 cut(s) 123, 322
BfuI GTATCC 2 cut(s) 123, 322
BisI GCNGC 1 cut(s) 318
BlsI GCNGC 1 cut(s) 319
Bme1390I CCNGG 2 cut(s) 51, 218
Bme18I GGWCC 1 cut(s) 239
BmgT120I GGNCC 1 cut(s) 239
BmiI GGNNCC 2 cut(s) 72, 212
BmrFI CCNGG 2 cut(s) 51, 218
BmsI GCATC 2 cut(s) 130, 175
BpiI GAAGAC 2 cut(s) 349, 356
BsaJI CCNNGG 3 cut(s) 144, 216, 271
BsaWI WCCGGW 1 cut(s) 241
Bse118I RCCGGY 1 cut(s) 381
BseAI TCCGGA 1 cut(s) 241
BseBI CCWGG 2 cut(s) 51, 218
BseDI CCNNGG 3 cut(s) 144, 216, 271
BseGI GGATG 1 cut(s) 21
BseSI GKGCMC 1 cut(s) 215
BseXI GCAGC 1 cut(s) 304
BshNI GGYRCC 1 cut(s) 210
BsiSI CCGG 2 cut(s) 242, 382
BslFI GGGAC 1 cut(s) 142
BsmFI GGGAC 1 cut(s) 142
BsmI GAATGC 1 cut(s) 349
Bsp1286I GDGCHC 1 cut(s) 215
Bsp13I TCCGGA 1 cut(s) 241
Bsp143I GATC 2 cut(s) 70, 248
BspACI CCGC 2 cut(s) 100, 281
BspEI TCCGGA 1 cut(s) 241
BspHI TCATGA 1 cut(s) 36
BspLI GGNNCC 2 cut(s) 72, 212
BspPI GGATC 3 cut(s) 65, 78, 256
BspT107I GGYRCC 1 cut(s) 210
BsrFI RCCGGY 1 cut(s) 381
BssAI RCCGGY 1 cut(s) 381
BssECI CCNNGG 3 cut(s) 144, 216, 271
BssMI GATC 2 cut(s) 70, 248
BssT1I CCWWGG 1 cut(s) 271
Bst2UI CCWGG 2 cut(s) 51, 218
BstAPI GCANNNNNTGC 1 cut(s) 172
BstC8I GCNNGC 1 cut(s) 383
BstDSI CCRYGG 1 cut(s) 144
BstF5I GGATG 1 cut(s) 21
BstKTI GATC 2 cut(s) 73, 251
BstMBI GATC 2 cut(s) 70, 248
BstMWI GCNNNNNNNGC 2 cut(s) 172, 287
BstNI CCWGG 2 cut(s) 51, 218
BstNSI RCATGY 1 cut(s) 58
BstSCI CCNGG 2 cut(s) 49, 216
BstSLI GKGCMC 1 cut(s) 215
BstV1I GCAGC 1 cut(s) 304
BstV2I GAAGAC 2 cut(s) 349, 356
BstX2I RGATCY 2 cut(s) 70, 248
BstXI CCANNNNNNTGG 1 cut(s) 207
BstYI RGATCY 2 cut(s) 70, 248
BsuI GTATCC 2 cut(s) 123, 322
BtgI CCRYGG 1 cut(s) 144
BtsCI GGATG 1 cut(s) 21
Cac8I GCNNGC 1 cut(s) 383
CciI TCATGA 1 cut(s) 36
Cfr10I RCCGGY 1 cut(s) 381
Cfr13I GGNCC 1 cut(s) 239
CviAII CATG 4 cut(s) 37, 55, 103, 131
CviJI RGCY 2 cut(s) 296, 385
CviKI_1 RGCY 2 cut(s) 296, 385
DpnI GATC 2 cut(s) 72, 250
DpnII GATC 2 cut(s) 70, 248
Eco130I CCWWGG 1 cut(s) 271
Eco32I GATATC 1 cut(s) 34
Eco47I GGWCC 1 cut(s) 239
Eco57I CTGAAG 1 cut(s) 343
EcoRII CCWGG 2 cut(s) 49, 216
EcoRV GATATC 1 cut(s) 34
EcoT14I CCWWGG 1 cut(s) 271
ErhI CCWWGG 1 cut(s) 271
FaeI CATG 4 cut(s) 40, 58, 106, 134
FaiI YATR 8 cut(s) 38, 56, 104, 132, 155, 163, 312, 375
FaqI GGGAC 1 cut(s) 142
FatI CATG 4 cut(s) 36, 54, 102, 130
FauI CCCGC 1 cut(s) 274
Fnu4HI GCNGC 1 cut(s) 318
FokI GGATG 1 cut(s) 8
Fsp4HI GCNGC 1 cut(s) 318
GluI GCNGC 1 cut(s) 318
HapII CCGG 2 cut(s) 242, 382
Hin1II CATG 4 cut(s) 40, 58, 106, 134
HincII GTYRAC 1 cut(s) 19
HindII GTYRAC 1 cut(s) 19
HinfI GANTC 1 cut(s) 43
HpaII CCGG 2 cut(s) 242, 382
Hpy166II GTNNAC 1 cut(s) 19
Hpy188I TCNGA 1 cut(s) 328
Hpy188III TCNNGA 3 cut(s) 29, 37, 242
Hpy8I GTNNAC 1 cut(s) 19
HpyAV CCTTC 1 cut(s) 35
HpyCH4IV ACGT 1 cut(s) 299
HpyCH4V TGCA 1 cut(s) 175
HpyF10VI GCNNNNNNNGC 2 cut(s) 172, 287
HpySE526I ACGT 1 cut(s) 299
Hsp92II CATG 4 cut(s) 40, 58, 106, 134
Kpn2I TCCGGA 1 cut(s) 241
KroI GCCGGC 1 cut(s) 381
KroNI GCCGGC 1 cut(s) 383
Kzo9I GATC 2 cut(s) 70, 248
Lsp1109I GCAGC 1 cut(s) 304
LweI GCATC 2 cut(s) 130, 175
MaeII ACGT 1 cut(s) 299
MaeIII GTNAC 1 cut(s) 95
MalI GATC 2 cut(s) 72, 250
MboI GATC 2 cut(s) 70, 248
MboII GAAGA 4 cut(s) 38, 73, 349, 356
MflI RGATCY 2 cut(s) 70, 248
MhlI GDGCHC 1 cut(s) 215
MluCI AATT 2 cut(s) 223, 276
MmeI TCCRAC 1 cut(s) 306
MnlI CCTC 2 cut(s) 33, 238
MroI TCCGGA 1 cut(s) 241
MroNI GCCGGC 1 cut(s) 381
MslI CAYNNNNRTG 1 cut(s) 312
MspI CCGG 2 cut(s) 242, 382
MspR9I CCNGG 2 cut(s) 51, 218
Mva1269I GAATGC 1 cut(s) 349
MvaI CCWGG 2 cut(s) 51, 218
MwoI GCNNNNNNNGC 2 cut(s) 172, 287
NaeI GCCGGC 1 cut(s) 383
NdeII GATC 2 cut(s) 70, 248
NgoMIV GCCGGC 1 cut(s) 381
NlaIII CATG 4 cut(s) 40, 58, 106, 134
NlaIV GGNNCC 2 cut(s) 72, 212
NspI RCATGY 1 cut(s) 58
PagI TCATGA 1 cut(s) 36
PctI GAATGC 1 cut(s) 349
PdiI GCCGGC 1 cut(s) 383
PfeI GAWTC 1 cut(s) 43
PkrI GCNGC 1 cut(s) 319
PsiI TTATAA 1 cut(s) 312
Psp6I CCWGG 2 cut(s) 49, 216
PspGI CCWGG 2 cut(s) 49, 216
PspN4I GGNNCC 2 cut(s) 72, 212
PspPI GGNCC 1 cut(s) 239
PsuI RGATCY 2 cut(s) 70, 248
RseI CAYNNNNRTG 1 cut(s) 312
SatI GCNGC 1 cut(s) 318
Sau3AI GATC 2 cut(s) 70, 248
Sau96I GGNCC 1 cut(s) 239
ScrFI CCNGG 2 cut(s) 51, 218
SduI GDGCHC 1 cut(s) 215
SetI ASST 1 cut(s) 302
SfaNI GCATC 2 cut(s) 130, 175
SinI GGWCC 1 cut(s) 239
SmiMI CAYNNNNRTG 1 cut(s) 312
Sse9I AATT 2 cut(s) 223, 276
SsiI CCGC 2 cut(s) 100, 281
StyD4I CCNGG 2 cut(s) 49, 216
StyI CCWWGG 1 cut(s) 271
TaiI ACGT 1 cut(s) 302
TasI AATT 2 cut(s) 223, 276
TfiI GAWTC 1 cut(s) 43
TseI GCWGC 1 cut(s) 317
TspDTI ATGAA 2 cut(s) 17, 119
VpaK11BI GGWCC 1 cut(s) 239
XapI RAATTY 1 cut(s) 223
XceI RCATGY 1 cut(s) 58
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.