Rw5G038500

Belongs to the AAA ATPase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr5
OG0017005
Physical Location & Seq
Forward (+)
67826353 .. 67830122
3770 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw5G038500.1

Sequence Viewer

Length: 831 bp
ATGAACAAGTATCCCGTTGTCAGATGGCATGAGATAGTGGATCTTCGTGGACCGAAAGTTGCCGTGGGGCGTATGTCCCTGTGGCATCTTTTGCAACCATCACTCTTTTGTGTTTCTCCAAGTTACTGGTGCCCCCAGGCAAATTTGTTGCTGTTTGGTCCGGAGGGTGAGAATGCGGTGATTTCCCTCTTTGGGGTGGCGAAATGCAAGCAGCCATATGTTATCTTCGTCGAAAATATTGACTATGTTTTATTAGCGTGTGAAAGTGAAGGTCGGGATGATAAATTTATGCGGACTAGAAATAGATTTATGAAGGAGAAACAGTTAATTGAATGGGAGGGTGGACAAGTTATTGTGATTGGTTCAAGTACTAGACCGGAAGTGCTTTCCCAGGAAGTGTTAAACGAGTTTCGGAATAGGTTATATCTACCCTTACCCTCATTCAAAGCTAGGTGGTCCATTATCGAGGGATTTTTGGAGAGAGAAGGACTGTTTTGCCTGTCATGGTCTGACTTGCATGATATTTGCCACATGACTGCAGGTTACTCTGGTACAGAATTAGAGGCGGTAGTCAAGCATGCGGTATCTCTCGGTCCATTGTCGAATTTTGATTCAAAATTTTCCTATCACCATTTTTTGGCTCAGGAAACGTTGCTTGCGATGCTGCCGCCATTGACTACAGAGGATTTTCGCAGAGCTACGTCACTTCTGGCGCCATCTGTTTTGGCAGATGATGTCTCGGCTTATGAGGTTTGGGATAAGAAAAATGGCTCTGGAACTGTGAGGAAGAGGAATAGCCGAACAAGGCCGAGTATGAGGAGAAATGTTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000003 GO:0000018 GO:0000228 GO:0000280 GO:0000287 GO:0001503 GO:0001649 GO:0003674 GO:0003824 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005694 GO:0005737 GO:0006139 GO:0006163 GO:0006282 GO:0006725 GO:0006753 GO:0006793 GO:0006796 GO:0006807 GO:0006996 GO:0007049 GO:0007140 GO:0007276 GO:0008150 GO:0008152 GO:0008283 GO:0009117 GO:0009123 GO:0009126 GO:0009141 GO:0009144 GO:0009150 GO:0009161 GO:0009167 GO:0009199 GO:0009205 GO:0009259 GO:0009314 GO:0009628 GO:0009892 GO:0009987 GO:0010212 GO:0010520 GO:0010564 GO:0010569 GO:0010605 GO:0010639 GO:0010941 GO:0010948 GO:0016043 GO:0016787 GO:0017144 GO:0019219 GO:0019222 GO:0019637 GO:0019693 GO:0019953 GO:0022402 GO:0022412 GO:0022414 GO:0030154 GO:0031323 GO:0031324 GO:0031974 GO:0031981 GO:0032501 GO:0032502 GO:0032504 GO:0033043 GO:0033687 GO:0034641 GO:0040020 GO:0042981 GO:0043066 GO:0043067 GO:0043069 GO:0043167 GO:0043169 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044237 GO:0044238 GO:0044281 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044464 GO:0044703 GO:0045128 GO:0045786 GO:0045835 GO:0045910 GO:0045934 GO:0046034 GO:0046483 GO:0046872 GO:0048232 GO:0048285 GO:0048471 GO:0048519 GO:0048523 GO:0048583 GO:0048609 GO:0048869 GO:0050789 GO:0050794 GO:0050896 GO:0051052 GO:0051053 GO:0051128 GO:0051129 GO:0051171 GO:0051172 GO:0051321 GO:0051445 GO:0051447 GO:0051704 GO:0051716 GO:0051726 GO:0051783 GO:0051784 GO:0055086 GO:0060255 GO:0060548 GO:0060631 GO:0065007 GO:0070013 GO:0071214 GO:0071478 GO:0071479 GO:0071704 GO:0071840 GO:0072521 GO:0080090 GO:0080134 GO:0080135 GO:0104004 GO:0110029 GO:0140013 GO:1901135 GO:1901360 GO:1901564 GO:1903046 GO:2000241 GO:2000242 GO:2000779 GO:2001020
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
AAA Vps4_C

Protein Analysis

276

Amino Acids

31.54

Weight (kDa)

8.18

Isoelectric Point (pI)

54.0

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
AAA PF00004 55 - 145 2.8e-06 ATPase family associated with various cellular activities (AAA)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 530
AccB1I GGYRCC 2 cut(s) 129, 712
AccB7I CCANNNNNTGG 1 cut(s) 637
AccIII TCCGGA 1 cut(s) 160
AciI CCGC 5 cut(s) 176, 292, 566, 581, 668
AclI AACGTT 1 cut(s) 650
AclWI GGATC 1 cut(s) 48
AcsI RAATTY 4 cut(s) 142, 284, 604, 617
AcyI GRCGYC 1 cut(s) 713
AfaI GTAC 2 cut(s) 370, 553
AfiI CCNNNNNNNGG 3 cut(s) 192, 193, 637
AgsI TTSAA 4 cut(s) 332, 366, 445, 615
AjnI CCWGG 2 cut(s) 135, 390
AluBI AGCT 2 cut(s) 449, 698
AluI AGCT 2 cut(s) 449, 698
Alw26I GTCTC 1 cut(s) 742
AlwI GGATC 1 cut(s) 48
Aor13HI TCCGGA 1 cut(s) 160
AoxI GGCC 1 cut(s) 806
ApeKI GCWGC 2 cut(s) 211, 664
ApoI RAATTY 4 cut(s) 142, 284, 604, 617
AspLEI GCGC 1 cut(s) 715
AspS9I GGNCC 4 cut(s) 50, 158, 456, 593
AsuHPI GGTGA 3 cut(s) 179, 190, 620
AvaII GGWCC 4 cut(s) 50, 158, 456, 593
BaeGI GKGCMC 1 cut(s) 134
BanI GGYRCC 2 cut(s) 129, 712
BbvI GCAGC 2 cut(s) 223, 651
BccI CCATC 3 cut(s) 18, 106, 724
BceAI ACGGC 1 cut(s) 47
BciT130I CCWGG 2 cut(s) 137, 392
BciVI GTATCC 1 cut(s) 21
BcoDI GTCTC 1 cut(s) 742
BfaI CTAG 3 cut(s) 297, 372, 450
BfmI CTRYAG 2 cut(s) 537, 678
BfoI RGCGCY 1 cut(s) 716
BfuAI ACCTGC 1 cut(s) 530
BfuI GTATCC 1 cut(s) 21
BisI GCNGC 3 cut(s) 212, 665, 668
BlsI GCNGC 3 cut(s) 213, 666, 669
BmcAI AGTACT 1 cut(s) 370
Bme1390I CCNGG 2 cut(s) 137, 392
Bme18I GGWCC 4 cut(s) 50, 158, 456, 593
BmgT120I GGNCC 4 cut(s) 50, 158, 456, 593
BmiI GGNNCC 2 cut(s) 131, 714
BmrFI CCNGG 2 cut(s) 137, 392
BmsI GCATC 2 cut(s) 94, 651
Bpu10I CCTNAGC 1 cut(s) 642
BsaHI GRCGYC 1 cut(s) 713
BsaJI CCNNGG 3 cut(s) 63, 135, 390
BsaWI WCCGGW 2 cut(s) 160, 376
BsaXI ACNNNNNCTCC 2 cut(s) 308, 338
Bsc4I CCNNNNNNNGG 3 cut(s) 192, 193, 637
Bse1I ACTGG 1 cut(s) 131
BseAI TCCGGA 1 cut(s) 160
BseBI CCWGG 2 cut(s) 137, 392
BseDI CCNNGG 3 cut(s) 63, 135, 390
BseGI GGATG 1 cut(s) 283
BseLI CCNNNNNNNGG 3 cut(s) 192, 193, 637
BseMII CTCAG 1 cut(s) 656
BseNI ACTGG 1 cut(s) 131
BseSI GKGCMC 1 cut(s) 134
BseXI GCAGC 2 cut(s) 223, 651
BshFI GGCC 1 cut(s) 808
BshNI GGYRCC 2 cut(s) 129, 712
BsiSI CCGG 2 cut(s) 161, 377
BslFI GGGAC 1 cut(s) 61
BslI CCNNNNNNNGG 3 cut(s) 192, 193, 637
BsmAI GTCTC 1 cut(s) 742
BsmFI GGGAC 1 cut(s) 61
BsmI GAATGC 1 cut(s) 178
BsnI GGCC 1 cut(s) 808
Bsp1286I GDGCHC 1 cut(s) 134
Bsp13I TCCGGA 1 cut(s) 160
Bsp143I GATC 1 cut(s) 40
BspACI CCGC 5 cut(s) 176, 292, 566, 581, 668
BspANI GGCC 1 cut(s) 808
BspCNI CTCAG 1 cut(s) 655
BspEI TCCGGA 1 cut(s) 160
BspLI GGNNCC 2 cut(s) 131, 714
BspMAI CTGCAG 1 cut(s) 541
BspMI ACCTGC 1 cut(s) 530
BspPI GGATC 1 cut(s) 48
BspT107I GGYRCC 2 cut(s) 129, 712
BsrI ACTGG 1 cut(s) 131
BssECI CCNNGG 3 cut(s) 63, 135, 390
BssMI GATC 1 cut(s) 40
BssNI GRCGYC 1 cut(s) 713
Bst2UI CCWGG 2 cut(s) 137, 392
Bst4CI ACNGT 3 cut(s) 324, 492, 781
Bst6I CTCTTC 1 cut(s) 782
BstACI GRCGYC 1 cut(s) 713
BstAPI GCANNNNNTGC 1 cut(s) 91
BstC8I GCNNGC 3 cut(s) 209, 579, 657
BstDEI CTNAG 1 cut(s) 642
BstDSI CCRYGG 1 cut(s) 63
BstF5I GGATG 1 cut(s) 283
BstH2I RGCGCY 1 cut(s) 716
BstHHI GCGC 1 cut(s) 715
BstKTI GATC 1 cut(s) 43
BstMAI GTCTC 1 cut(s) 742
BstMBI GATC 1 cut(s) 40
BstMWI GCNNNNNNNGC 2 cut(s) 91, 661
BstNI CCWGG 2 cut(s) 137, 392
BstNSI RCATGY 1 cut(s) 581
BstSCI CCNGG 2 cut(s) 135, 390
BstSFI CTRYAG 2 cut(s) 537, 678
BstSLI GKGCMC 1 cut(s) 134
BstV1I GCAGC 2 cut(s) 223, 651
BstX2I RGATCY 1 cut(s) 40
BstXI CCANNNNNNTGG 1 cut(s) 126
BstYI RGATCY 1 cut(s) 40
BsuI GTATCC 1 cut(s) 21
BsuRI GGCC 1 cut(s) 808
BtgI CCRYGG 1 cut(s) 63
BtgZI GCGATG 1 cut(s) 674
BtsCI GGATG 1 cut(s) 283
BveI ACCTGC 1 cut(s) 530
Cac8I GCNNGC 3 cut(s) 209, 579, 657
CfoI GCGC 1 cut(s) 715
Cfr13I GGNCC 4 cut(s) 50, 158, 456, 593
Csp6I GTAC 2 cut(s) 369, 552
CviAII CATG 5 cut(s) 29, 504, 518, 532, 578
CviJI RGCY 8 cut(s) 214, 449, 641, 698, 743, 771, 798, 808
CviKI_1 RGCY 8 cut(s) 214, 449, 641, 698, 743, 771, 798, 808
CviQI GTAC 2 cut(s) 369, 552
DdeI CTNAG 1 cut(s) 642
DinI GGCGCC 1 cut(s) 714
DpnI GATC 1 cut(s) 42
DpnII GATC 1 cut(s) 40
Eam1104I CTCTTC 1 cut(s) 782
EarI CTCTTC 1 cut(s) 782
Eco47I GGWCC 4 cut(s) 50, 158, 456, 593
EcoRII CCWGG 2 cut(s) 135, 390
EgeI GGCGCC 1 cut(s) 714
EheI GGCGCC 1 cut(s) 714
FaeI CATG 5 cut(s) 32, 507, 521, 535, 581
FaqI GGGAC 1 cut(s) 61
FatI CATG 5 cut(s) 28, 503, 517, 531, 577
FauNDI CATATG 1 cut(s) 217
Fnu4HI GCNGC 3 cut(s) 212, 665, 668
FokI GGATG 1 cut(s) 290
Fsp4HI GCNGC 3 cut(s) 212, 665, 668
FspBI CTAG 3 cut(s) 297, 372, 450
GlaI GCGC 1 cut(s) 714
GluI GCNGC 3 cut(s) 212, 665, 668
HaeII RGCGCY 1 cut(s) 716
HaeIII GGCC 1 cut(s) 808
HapII CCGG 2 cut(s) 161, 377
HhaI GCGC 1 cut(s) 715
Hin1I GRCGYC 1 cut(s) 713
Hin1II CATG 5 cut(s) 32, 507, 521, 535, 581
Hin6I GCGC 1 cut(s) 713
HinP1I GCGC 1 cut(s) 713
HinfI GANTC 1 cut(s) 611
HpaII CCGG 2 cut(s) 161, 377
HphI GGTGA 3 cut(s) 179, 190, 620
Hpy166II GTNNAC 2 cut(s) 50, 344
Hpy188I TCNGA 3 cut(s) 23, 414, 511
Hpy188III TCNNGA 4 cut(s) 161, 275, 644, 774
Hpy8I GTNNAC 2 cut(s) 50, 344
Hpy99I CGWCG 1 cut(s) 233
HpyAV CCTTC 3 cut(s) 263, 307, 479
HpyCH4III ACNGT 3 cut(s) 324, 492, 781
HpyCH4IV ACGT 2 cut(s) 650, 701
HpyCH4V TGCA 4 cut(s) 94, 207, 517, 539
HpyF10VI GCNNNNNNNGC 2 cut(s) 91, 661
HpyF3I CTNAG 1 cut(s) 642
HpySE526I ACGT 2 cut(s) 650, 701
Hsp92I GRCGYC 1 cut(s) 713
Hsp92II CATG 5 cut(s) 32, 507, 521, 535, 581
HspAI GCGC 1 cut(s) 713
KasI GGCGCC 1 cut(s) 712
Kpn2I TCCGGA 1 cut(s) 160
Kzo9I GATC 1 cut(s) 40
Lsp1109I GCAGC 2 cut(s) 223, 651
LweI GCATC 2 cut(s) 94, 651
MaeI CTAG 3 cut(s) 297, 372, 450
MaeII ACGT 2 cut(s) 650, 701
MaeIII GTNAC 3 cut(s) 122, 542, 702
MalI GATC 1 cut(s) 42
MboI GATC 1 cut(s) 40
MboII GAAGA 3 cut(s) 35, 217, 799
MflI RGATCY 1 cut(s) 40
MhlI GDGCHC 1 cut(s) 134
MluCI AATT 6 cut(s) 142, 284, 327, 557, 604, 617
Mly113I GGCGCC 1 cut(s) 713
MroI TCCGGA 1 cut(s) 160
MseI TTAA 2 cut(s) 326, 401
MspI CCGG 2 cut(s) 161, 377
MspR9I CCNGG 2 cut(s) 137, 392
Mva1269I GAATGC 1 cut(s) 178
MvaI CCWGG 2 cut(s) 137, 392
MwoI GCNNNNNNNGC 2 cut(s) 91, 661
NarI GGCGCC 1 cut(s) 713
NdeI CATATG 1 cut(s) 217
NdeII GATC 1 cut(s) 40
NlaIII CATG 5 cut(s) 32, 507, 521, 535, 581
NlaIV GGNNCC 2 cut(s) 131, 714
NmeAIII GCCGAG 1 cut(s) 719
NmuCI GTSAC 1 cut(s) 702
NspI RCATGY 1 cut(s) 581
PaeI GCATGC 1 cut(s) 581
PcsI WCGNNNNNNNCGW 1 cut(s) 656
PctI GAATGC 1 cut(s) 178
PfeI GAWTC 1 cut(s) 611
PflMI CCANNNNNTGG 1 cut(s) 637
PkrI GCNGC 3 cut(s) 213, 666, 669
PluTI GGCGCC 1 cut(s) 716
Psp1406I AACGTT 1 cut(s) 650
Psp6I CCWGG 2 cut(s) 135, 390
PspGI CCWGG 2 cut(s) 135, 390
PspN4I GGNNCC 2 cut(s) 131, 714
PspPI GGNCC 4 cut(s) 50, 158, 456, 593
PstI CTGCAG 1 cut(s) 541
PsuI RGATCY 1 cut(s) 40
RsaI GTAC 2 cut(s) 370, 553
RsaNI GTAC 2 cut(s) 369, 552
SaqAI TTAA 2 cut(s) 326, 401
SatI GCNGC 3 cut(s) 212, 665, 668
Sau3AI GATC 1 cut(s) 40
Sau96I GGNCC 4 cut(s) 50, 158, 456, 593
ScaI AGTACT 1 cut(s) 370
ScrFI CCNGG 2 cut(s) 137, 392
SduI GDGCHC 1 cut(s) 134
SetI ASST 9 cut(s) 274, 422, 451, 455, 544, 653, 700, 704, 753
SfaNI GCATC 2 cut(s) 94, 651
SfcI CTRYAG 2 cut(s) 537, 678
SfoI GGCGCC 1 cut(s) 714
SinI GGWCC 4 cut(s) 50, 158, 456, 593
SphI GCATGC 1 cut(s) 581
Sse9I AATT 6 cut(s) 142, 284, 327, 557, 604, 617
SsiI CCGC 5 cut(s) 176, 292, 566, 581, 668
SspDI GGCGCC 1 cut(s) 712
SspI AATATT 1 cut(s) 238
SspMI CTAG 3 cut(s) 297, 372, 450
StyD4I CCNGG 2 cut(s) 135, 390
TaaI ACNGT 3 cut(s) 324, 492, 781
TaiI ACGT 2 cut(s) 653, 704
TaqI TCGA 3 cut(s) 231, 465, 602
TaqII GACCGA 2 cut(s) 67, 581
TasI AATT 6 cut(s) 142, 284, 327, 557, 604, 617
TatI WGTACW 1 cut(s) 368
TauI GCSGC 1 cut(s) 670
TfiI GAWTC 1 cut(s) 611
Tru1I TTAA 2 cut(s) 326, 401
Tru9I TTAA 2 cut(s) 326, 401
TseFI GTSAC 1 cut(s) 702
TseI GCWGC 2 cut(s) 211, 664
Tsp45I GTSAC 1 cut(s) 702
TspDTI ATGAA 2 cut(s) 17, 326
Van91I CCANNNNNTGG 1 cut(s) 637
VpaK11BI GGWCC 4 cut(s) 50, 158, 456, 593
XapI RAATTY 4 cut(s) 142, 284, 604, 617
XceI RCATGY 1 cut(s) 581
XspI CTAG 3 cut(s) 297, 372, 450
ZrmI AGTACT 1 cut(s) 370
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.