Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0007932

Physical Location & Seq

Genomic Coordinates Forward (+)

49931264 .. 49939500

Gene Structure 8237 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ25695

Sequence Viewer

CDS Protein Promoter (2k)

Length: 4629 bp

ATGGGTCTCACTCTCTTGCTTCACAAAATCTCAGCTTCTTCTTCATCTTCAAACCCAGCTCAGCTATCCCAGACGACCCCTTTGGGAGCTGTGCAAGGTCTGCCCTTCCTGGAGCTGTCTTCTATTGTCATCAATTTGGCGCTAGTTCTTGCGTTTCTCTTCATCGTTTCGGCCCGGCGGATGGTTGTCTGTCTGGGCCGGATTAGGGTGCTGAAAGACGATTTGGGTTCGAATGGGAACCCAATTCAGCATGATAGTGCTGTTGATAGGGGAATCCAGGAGGTTAGAGTGGGCACAGACTTTAAATTTTCAGTGTTTTGCTGCTTCTATGTGTTGTTTGTGCAAGTTGTGGTGTTGGGTTTTGATGGGGTTGGTTTGGTTAGAGGAGGAGGAGGGGGTGGTAGTGGGAGGGTGGTGGTTTGGTCTGTGCTTTGCTTACCAGCTGCACAGGGCTTAGCTTGGTTTGTGATGAGCTTCTCGGCTTTGCATTGTAAGTTCAAGGCGGCCGAGAAGTTCCCATTGCTGTTGAGGGGTTGGTGGGCTGTCTCCTTTGTGCTTTGCTTGTGCACTTTGTATGTTGATGGGAGAGGTTTTGTACAAGAAGGCTCGATACACCTTCATTCTCATGTTGTGGCTAATTTCGCAGTCACACCGGCCCTAGCGTTTCTCTGTTTCGTTGCAATTAGGGGTGTGACTGGTGTGATTGTTTGTAGAAACTCTGAGCTTCAAGAGCCATTGCTCGAAGAAGAAGCAGGGTGTCTTAAGGTTACTCCTTATAGTGATGCTGGGATTTTCAGCTTGGCAACACTATCTTGGATAAACCCTCTTCTTTCAATAGGGGCAAAGAGACCGCTTGAGATCAAGGATATTCCTCTTCTTGCACCACAAGATCGAGCCAAGACCAATTATAAGGTCTTGAATTCAAATTGGGAGAAATTGAAGGCTGAAGATCCTTCAAATCAGCCTTCTTTAGCCTGGGCAATTCTCAAGTCATTTTGGAAGGAGGCAGCTTGTAATGCCATTTTCGCCGGCTTGAACACTCTTGTTTCATATGTGGGTCCGTATATGATCAGCTATTTCGTTGATTACTTGGGGGGAATAGAGACTTTCCCCCATGAAGGGTATATCCTTGCTGGGACCTTCTTTGCAGCGAAGCTAGTTGAGACCTTAACAACCCGGCAGTGGTATCTTGGGGTGGACATTTTGGGTATGCATGTAAGATCAGCTCTAACAGCAATGGTATACCGAAAGGGACTCAGGCTTTCCAGCTCAGCCAAGCAAAGTCACACTAGTGGAGAGATTGTTAACTACATGGCTGTTGATGTGCAGAGGGTAGGGGACTATTCCTGGTATCTCCATGACATATGGATGCTTCCTCTGCAAATTGTTCTTGCCCTTGCAATTTTATACAAGAATGTTGGAATTGCTTCTGTTGCTACATTGATTGCCACCATTATCTCCATTGTTCTTACTGTTCCTTTGGCAAAGATACAAGAAGATTATCAAGACAAGTTGATGACGGCAAAGGATGAAAGAATGAGGAAGACTTCTGAGTGCCTGCGGAACATGAGAATTCTTAAGTTGCAAGCTTGGGAGGACAGATACCGACTGATGTTAGAGGAGATGCGTAGTGTGGAGTTTAAGTATCTACGCAAAGCCCTCTACTCGCAAGCTTTTATCACATTCATGTTCTGGAGCTCTCCTATATTTGTTTCAGCTGTCACTTTCGGTACTTCTGTATTTTTGGGTACTCGTCTCACTGCAGGTGGTGTTCTTTCTGCTCTCGCCACTTTCAGGATCCTCCAAGAACCACTCAGGAATTTCCCTGACCTGGTATCAATGATGGCTCAGACAAAAGTTTCCCTTGATCGTATTTCTGGATTCTTGCAGGAGGAAGAGTTACAGGCAGATGCAACAATTGTCCTGCCACGGGGCATCACAAGCACGTCAATAGAAATTAAAGATGGTGTGTTTAGCTGGGACCCTTCCTCTGCAAGACCAACGTTATCGGGAATACAAATGAAAGTGGAAAGAGGGATGCGTGTTGCCGTATGTGGAATGGTTGGTTCTGGAAAATCAAGTTTTCTCTCTTGCATCCTTGGGGAGATCCCGAAAGTCTCCGGTGAAGTAAAGTTATGTGGTACTGCTGCTTATGTTTCTCAGTCAGCATGGATACAGTCTGGTAATATAGAAGAAAATATTCTTTTTGGCAGCCCAATGGAGAAACCAAAGTACAAGAAGGTTATCCATGCTTGTTCACTGAAAAAGGATTTGGAACTTTTCTCACATGGAGATCAAACCATAATTGGTGATAGGGGTATAAATTTGAGTGGTGGCCAGAAGCAACGTGTGCAGCTTGCAAGGGCACTCTATCAGGACGCTGACATTTATTTACTTGACGACCCCTTCAGTGCAGTTGATGCACACACTGGATCAGAGTTGTTTAAGGAATACATATTGACAGCATTAGAAGACAAAACTGTTGTTTTCGTGACCCATCAAGTCGAATTTCTGCCTTCTGCTGATTTAATCCTGGTTCTTAAAGAAGGGTGCATCATACAAGCAGGAAAATATGATGATCTTTTACAGGCAGGAACTGATTTTAAGACACTAGTCTCAGCTCACCATGATGCAATTGAAGCTATGGATATTCCCAATTATTCATCAGGCGACTCTGATCACAACTTGTGTCCAGATGGCTCTGTTGGACTTGGCAAAAATCCTGATTTACCAAGCAGCAGTGTTGATTGTTTGGCAAAGGAAGTGCAAGAAGGTCCATCAGCTTCAGAGCAGAAAGCAATTAAAGAGAAAAAGAAGGCAAAGCGGGCAAGAAAGAAGCAGCTTGTACAAGAAGAGGAAAGGGTAAGAGGAAGAGTCAGCATGAAGGTTTACTTGTCATATATGGCTGCAGCATATAAAGGATCGCTGATTCCACTCATAATTATTGCACAAGCAATATTTCAATTCCTTCAAATTGCTAGTAGTTGGTGGATGGCTTGGGCGAATCCCCAAACACAGGGAGATCAGCCTAAAGTGAGTGCTATGGTCCTTCTTGGTGTTTACATGGCCCTTGCATTTGGGAGCTCTTGGTTTATATTTATTAGGGCTGTGTTGGTTGCTACCTTTGGTCTAGAAGCTGCACAGAAATTGTTTCTGAAGATGCTTAGGAGTGTTTTCCGCGCACCAATGTCTTTCTTTGATTCTACTCCTGCTGGACGGATCTTGAATCGTGTATCAATTGATCAAAGTGTGGTGGATCTTGATATTCCTTTTAGACTTGGTGGGTTCGCTTCAACGACAATACAGCTTATAGGCATTGTTGGTGTGATGACAAAAGTTACCTGGCAAGTTTTGCTTCTTGTTGTTCCTATGGCAATTGCTTGTTTGTGGATGCAGAAATACTACATGGCTTCATCAAGGGAATTAGTCCGAATTGTTAGCATTCAGAAATCTCCAATTATCCATCTTTTCGGTGAGTCAATTGCAGGGGCGGCCACAATAAGAGGATTTGGACAGGAAAAAAGGTTCATGAAAAGGAATCTTTATTTCCTTGATTGTTTTGCTCGCCCATTCTTCTGCAGTATTGCTGCTATTGAATGGCTCTGCCTACGGATGGAATTACTCTCGACTTTTGTATTTGCTTTCTGCATGCTTTTACTTGTGAGCTTTCCACATGGAACCATTGATCCAAGCATGGCGGGTCTTGCTGTAACATATGGCTTGAATTTAAATGCACGGTTATCACGGTGGATACTTAGCTTTTGCAAGCTTGAGAACAAAATTATTTCCATAGAAAGGATTTATCAGTACAGTCAAATCCAAAGTGAAGCTCCCCCAGTTATTGAGGACTCTCGTCCTCCAACTAGATGGCCCGAGAATGGAACAATTGAACTGCATGATTTAAAGGTTCGTTACAAGGAAAATCTTCCTGTAGTGCTTCATGGGGTAACTTGCACTTTTCCTGGCGGAAAGAAGATTGGAATTGTTGGGCGTACTGGAAGTGGCAAATCCACTTTGATCCAGGCCTTATTTCGACTGATTGAACCAGCAGGTGGGAGGATCCTTATAGACAAAATAGATATTTCAACACTCGGTCTTCATGATCTTCGTAGCCGTCTCAGTATCATACCCCAGGATCCTACCTTATTCGAAGGAACTATTAGGGGGAATCTTGATCCCCTTCAAGAGCATTCAGATCATGAAGTTTGGCAGGCACTTGACAAATCTCAGCTTGGAGATGTAATCCGTAAAACAGAGCACAAGCTTGATTCACCAGTGCTAGAAAATGGGGATAATTGGAGCGTGGGGCAGCGACAACTTGTTTCTCTGGGTCGGGCATTGCTTAAGCAGGCCAAAATACTGGTGCTTGATGAAGCAACAGCATCAGTTGATACACAGACAGACAATCTCATCCAGAAAATTATTCGAACAGAGTTTAAGAACTGTACTGTGTGCACTATAGCGCATCGTATACCAACCGTCATTGACAGTGATCTAGTATTGGTTCTGAGTGATGGTCGAGTGGCAGAGTTTGATACTCCTCAACGGCTATTAGAAGATAAATCGTCCATGTTTCTAAAATTGGTAACTGAGTATTCATCAAGGTCAACTGGTATACCGGATTTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000325 GO:0001101 GO:0003674 GO:0003824 GO:0004888 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0006810 GO:0006873 GO:0006875 GO:0006950 GO:0006970 GO:0007154 GO:0007165 GO:0008150 GO:0008281 GO:0009628 GO:0009651 GO:0009719 GO:0009725 GO:0009737 GO:0009738 GO:0009755 GO:0009987 GO:0010033 GO:0010118 GO:0015399 GO:0015405 GO:0016020 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0019725 GO:0022804 GO:0022857 GO:0023052 GO:0030003 GO:0030004 GO:0030007 GO:0031090 GO:0032870 GO:0033993 GO:0038023 GO:0042221 GO:0042592 GO:0042623 GO:0042626 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043492 GO:0044422 GO:0044424 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0048878 GO:0050789 GO:0050794 GO:0050801 GO:0050896 GO:0051179 GO:0051234 GO:0051716 GO:0055065 GO:0055067 GO:0055075 GO:0055080 GO:0055082 GO:0055085 GO:0060089 GO:0065007 GO:0065008 GO:0070887 GO:0071215 GO:0071229 GO:0071310 GO:0071396 GO:0071495 GO:0097305 GO:0097306 GO:0098588 GO:0098771 GO:0098805 GO:1901527 GO:1901700 GO:1901701

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

ABC_membrane ABC_tran

Protein Analysis

1542

Amino Acids

170.61

Weight (kDa)

8.49

Isoelectric Point (pI)

39.28

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ABC_membrane	PF00664	340 - 605	1.7e-29	ABC transporter transmembrane region
ABC_tran	PF00005	669 - 803	2e-18	ABC transporter
ABC_membrane	PF00664	979 - 1221	1.8e-29	ABC transporter transmembrane region
ABC_tran	PF00005	1313 - 1461	1.3e-27	ABC transporter

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

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Orthologous Genes (Group: OG0007932)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G04120 AT1G04120 AT1G04120
fragaria_vesca	FvH4_2g20350 FvH4_2g20350 FvH4_2g20350
malus_domestica	MD05G1187600.v1.1 MD10G1175300.v1.1
prunus_persica	Prupe.8G214600_v2.0.a1 Prupe.8G214600_v2.0.a1 Prupe.8G214600_v2.0.a1
pyrus_communis	pycom05g17240 pycom10g15100
rosa_chinensis	RchiOBHm_Chr6g0286471
rosa_laevigata	RLG00000012569
rosa_multiflora	Rmu_sc0034370.1_g000001
rosa_roxburghii	Rroxscaffold_7G00182310
rosa_rugosa	Rorug06G0179900 Rorug06G0180000
rosa_samantha	Rh6AG292200 Rh6BG295800 Rh6CG296500 Rh6DG288300
rosa_wichuraiana	Rw6G025200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	909
AarI	CACCTGC	2 cut(s)	1754, 4040
Acc36I	ACCTGC	2 cut(s)	1754, 4040
AccB7I	CCANNNNNTGG	1 cut(s)	4052
AccI	GTMKAC	3 cut(s)	1242, 4471, 4615
AccII	CGCG	1 cut(s)	3180
AciI	CCGC	9 cut(s)	178, 503, 851, 1561, 2824, 3178, 3491, 3698, 3966
AclI	AACGTT	1 cut(s)	2003
AcoI	YGGCCR	3 cut(s)	504, 2335, 3492
AcsI	RAATTY	7 cut(s)	305, 919, 1572, 1819, 2323, 2507, 3724
AcuI	CTGAAG	4 cut(s)	966, 2392, 2769, 3176
AfaI	GTAC	9 cut(s)	597, 1732, 1750, 2143, 2234, 2847, 3809, 3994, 4447
AflII	CTTAAG	3 cut(s)	761, 1577, 4343
AflIII	ACRYGT	1 cut(s)	2347
AhlI	ACTAGT	2 cut(s)	1289, 2611
AjiI	CACGTC	1 cut(s)	1947
AjuI	GAANNNNNNNTTGG	4 cut(s)	206, 238, 2255, 2287
AleI	CACNNNNGTG	1 cut(s)	1290
AloI	GAACNNNNNNTCC	4 cut(s)	3509, 3541, 3670, 3702
Alw21I	GWGCWC	5 cut(s)	569, 1700, 3086, 4260, 4457
Alw26I	GTCTC	9 cut(s)	11, 550, 841, 1097, 1157, 1760, 2122, 2620, 4121
Alw44I	GTGCAC	2 cut(s)	565, 4453
AlwNI	CAGNNNCTG	1 cut(s)	2597
Ama87I	CYCGRG	1 cut(s)	3872
ApaLI	GTGCAC	2 cut(s)	565, 4453
ApoI	RAATTY	7 cut(s)	305, 919, 1572, 1819, 2323, 2507, 3724
ArsI	GACNNNNNNTTYG	2 cut(s)	64, 96
Asp700I	GAANNNNTTC	3 cut(s)	1426, 2199, 3924
AspLEI	GCGC	3 cut(s)	142, 3182, 4465
AsuC2I	CCSGG	2 cut(s)	175, 1177
AsuHPI	GGTGA	5 cut(s)	2135, 2321, 2615, 3485, 4263
AsuII	TTCGAA	3 cut(s)	230, 4149, 4426
AvaI	CYCGRG	1 cut(s)	3872
AvaII	GGWCC	5 cut(s)	1058, 1137, 1981, 2774, 3046
BaeGI	GKGCMC	4 cut(s)	296, 569, 2368, 4457
BaeI	ACNNNNGTAYC	2 cut(s)	1722, 1755
BalI	TGGCCA	1 cut(s)	2337
BamHI	GGATCC	3 cut(s)	1797, 4059, 4135
BanII	GRGCYC	2 cut(s)	1700, 3086
BarI	GAAGNNNNNNTAC	2 cut(s)	594, 626
BbsI	GAAGAC	4 cut(s)	111, 1550, 2478, 4088
Bbv12I	GWGCWC	5 cut(s)	569, 1700, 3086, 4260, 4457
BceAI	ACGGC	4 cut(s)	1536, 2033, 4098, 4562
BciVI	GTATCC	2 cut(s)	2166, 3744
BclI	TGATCA	3 cut(s)	1068, 2677, 3241
BcnI	CCSGG	2 cut(s)	175, 1177
BcoDI	GTCTC	9 cut(s)	11, 550, 841, 1097, 1157, 1760, 2122, 2620, 4121
BcuI	ACTAGT	2 cut(s)	1289, 2611
BfmI	CTRYAG	5 cut(s)	1761, 2907, 3577, 3930, 4458
BfoI	RGCGCY	1 cut(s)	143
BfrI	CTTAAG	3 cut(s)	761, 1577, 4343
BfuAI	ACCTGC	2 cut(s)	1754, 4040
BfuI	GTATCC	2 cut(s)	2166, 3744
BlpI	GCTNAGC	3 cut(s)	60, 454, 1270
Bme18I	GGWCC	5 cut(s)	1058, 1137, 1981, 2774, 3046
BmeT110I	CYCGRG	1 cut(s)	3872
BmgBI	CACGTC	1 cut(s)	1947
BmiI	GGNNCC	9 cut(s)	239, 1059, 1138, 1799, 1982, 1983, 3679, 4061, 4137
BmrI	ACTGGG	1 cut(s)	3830
BmuI	ACTGGG	1 cut(s)	3830
BoxI	GACNNNNGTC	2 cut(s)	2612, 3852
BpiI	GAAGAC	4 cut(s)	111, 1550, 2478, 4088
BpmI	CTGGAG	2 cut(s)	131, 1714
Bpu10I	CCTNAGC	1 cut(s)	3164
Bpu1102I	GCTNAGC	3 cut(s)	60, 454, 1270
Bpu14I	TTCGAA	3 cut(s)	230, 4149, 4426
BpuEI	CTTGAG	3 cut(s)	875, 971, 3791
BpuMI	CCSGG	2 cut(s)	175, 1177
BsaI	GGTCTC	3 cut(s)	11, 841, 1157
BsaJI	CCNNGG	4 cut(s)	975, 1928, 2098, 4131
BsaWI	WCCGGW	2 cut(s)	2120, 4618
BsaXI	ACNNNNNCTCC	6 cut(s)	1287, 1317, 1628, 1658, 1883, 1913
Bse118I	RCCGGY	2 cut(s)	652, 1028
Bse1I	ACTGG	7 cut(s)	700, 2434, 3836, 4000, 4274, 4365, 4615
Bse3DI	GCAATG	4 cut(s)	518, 734, 1242, 4337
BseDI	CCNNGG	4 cut(s)	975, 1928, 2098, 4131
BseGI	GGATG	9 cut(s)	186, 1374, 1534, 2043, 2094, 2997, 3396, 3618, 4410
BseMI	GCAATG	4 cut(s)	518, 734, 1242, 4337
BseNI	ACTGG	7 cut(s)	700, 2434, 3836, 4000, 4274, 4365, 4615
BseRI	GAGGAG	5 cut(s)	399, 402, 405, 1634, 4530
BseSI	GKGCMC	4 cut(s)	296, 569, 2368, 4457
BseX3I	CGGCCG	1 cut(s)	504
BseYI	CCCAGC	4 cut(s)	55, 785, 1133, 1977
BsgI	GTGCAG	5 cut(s)	429, 1346, 2372, 2433, 3123
Bsh1236I	CGCG	1 cut(s)	3180
Bsh1285I	CGRYCG	1 cut(s)	507
BsiEI	CGRYCG	1 cut(s)	507
BsiHKAI	GWGCWC	5 cut(s)	569, 1700, 3086, 4260, 4457
BsiHKCI	CYCGRG	1 cut(s)	3872
BsiSI	CCGG	7 cut(s)	175, 199, 653, 1029, 1177, 2121, 4619
BslFI	GGGAC	4 cut(s)	1150, 1266, 1352, 1994
BsmAI	GTCTC	9 cut(s)	11, 550, 841, 1097, 1157, 1760, 2122, 2620, 4121
BsmBI	CGTCTC	2 cut(s)	1760, 4121
BsmFI	GGGAC	4 cut(s)	1150, 1266, 1352, 1994
BsmI	GAATGC	2 cut(s)	3441, 4189
Bso31I	GGTCTC	3 cut(s)	11, 841, 1157
BsoBI	CYCGRG	1 cut(s)	3872
Bsp119I	TTCGAA	3 cut(s)	230, 4149, 4426
Bsp1286I	GDGCHC	7 cut(s)	296, 569, 1700, 2368, 3086, 4260, 4457
Bsp1407I	TGTACA	2 cut(s)	595, 2845
Bsp1720I	GCTNAGC	3 cut(s)	60, 454, 1270
BspACI	CCGC	9 cut(s)	178, 503, 851, 1561, 2824, 3178, 3491, 3698, 3966
BspFNI	CGCG	1 cut(s)	3180
BspHI	TCATGA	3 cut(s)	3528, 4099, 4198
BspLI	GGNNCC	9 cut(s)	239, 1059, 1138, 1799, 1982, 1983, 3679, 4061, 4137
BspMAI	CTGCAG	3 cut(s)	1765, 2911, 3581
BspMI	ACCTGC	2 cut(s)	1754, 4040
BspT104I	TTCGAA	3 cut(s)	230, 4149, 4426
BspTI	CTTAAG	3 cut(s)	761, 1577, 4343
BspTNI	GGTCTC	3 cut(s)	11, 841, 1157
BsrDI	GCAATG	4 cut(s)	518, 734, 1242, 4337
BsrFI	RCCGGY	2 cut(s)	652, 1028
BsrGI	TGTACA	2 cut(s)	595, 2845
BsrI	ACTGG	7 cut(s)	700, 2434, 3836, 4000, 4274, 4365, 4615
BssAI	RCCGGY	2 cut(s)	652, 1028
BssECI	CCNNGG	4 cut(s)	975, 1928, 2098, 4131
BssNAI	GTATAC	3 cut(s)	1243, 4472, 4616
BssT1I	CCWWGG	1 cut(s)	2098
Bst1107I	GTATAC	3 cut(s)	1243, 4472, 4616
Bst6I	CTCTTC	6 cut(s)	164, 831, 879, 1890, 2847, 2866
BstAFI	CTTAAG	3 cut(s)	761, 1577, 4343
BstAPI	GCANNNNNTGC	4 cut(s)	100, 2350, 2420, 3352
BstAUI	TGTACA	2 cut(s)	595, 2845
BstBI	TTCGAA	3 cut(s)	230, 4149, 4426
BstDSI	CCRYGG	1 cut(s)	1928
BstF5I	GGATG	9 cut(s)	186, 1374, 1534, 2043, 2094, 2997, 3396, 3618, 4410
BstFNI	CGCG	1 cut(s)	3180
BstH2I	RGCGCY	1 cut(s)	143
BstHHI	GCGC	3 cut(s)	142, 3182, 4465
BstMAI	GTCTC	9 cut(s)	11, 550, 841, 1097, 1157, 1760, 2122, 2620, 4121
BstMCI	CGRYCG	1 cut(s)	507
BstNSI	RCATGY	2 cut(s)	1217, 3652
BstPAI	GACNNNNGTC	2 cut(s)	2612, 3852
BstSFI	CTRYAG	5 cut(s)	1761, 2907, 3577, 3930, 4458
BstSLI	GKGCMC	4 cut(s)	296, 569, 2368, 4457
BstUI	CGCG	1 cut(s)	3180
BstV2I	GAAGAC	4 cut(s)	111, 1550, 2478, 4088
BstX2I	RGATCY	7 cut(s)	949, 1797, 2106, 3219, 3256, 4059, 4135
BstXI	CCANNNNNNTGG	2 cut(s)	3867, 4360
BstYI	RGATCY	7 cut(s)	949, 1797, 2106, 3219, 3256, 4059, 4135
BstZ17I	GTATAC	3 cut(s)	1243, 4472, 4616
BstZI	CGGCCG	1 cut(s)	504
BsuI	GTATCC	2 cut(s)	2166, 3744
BtgI	CCRYGG	1 cut(s)	1928
BtrI	CACGTC	1 cut(s)	1947
BtsCI	GGATG	9 cut(s)	186, 1374, 1534, 2043, 2094, 2997, 3396, 3618, 4410
BtsI	GCAGTG	3 cut(s)	1187, 1758, 2746
BtsIMutI	CAGTG	9 cut(s)	318, 1187, 1758, 2258, 2416, 2427, 2746, 4281, 4495
BveI	ACCTGC	2 cut(s)	1754, 4040
CaiI	CAGNNNCTG	1 cut(s)	2597
CciI	TCATGA	3 cut(s)	3528, 4099, 4198
CfoI	GCGC	3 cut(s)	142, 3182, 4465
Cfr10I	RCCGGY	2 cut(s)	652, 1028
CseI	GACGC	1 cut(s)	2387
CsiI	ACCWGGT	1 cut(s)	1830
Csp6I	GTAC	9 cut(s)	596, 1731, 1749, 2142, 2233, 2846, 3808, 3993, 4446
CviQI	GTAC	9 cut(s)	596, 1731, 1749, 2142, 2233, 2846, 3808, 3993, 4446
DraI	TTTAAA	3 cut(s)	304, 3729, 3903
EaeI	YGGCCR	3 cut(s)	504, 2335, 3492
EagI	CGGCCG	1 cut(s)	504
Eam1104I	CTCTTC	6 cut(s)	164, 831, 879, 1890, 2847, 2866
EarI	CTCTTC	6 cut(s)	164, 831, 879, 1890, 2847, 2866
EciI	GGCGGA	2 cut(s)	193, 3981
Ecl136II	GAGCTC	2 cut(s)	1698, 3084
EclXI	CGGCCG	1 cut(s)	504
Eco130I	CCWWGG	1 cut(s)	2098
Eco147I	AGGCCT	1 cut(s)	4025
Eco24I	GRGCYC	2 cut(s)	1700, 3086
Eco31I	GGTCTC	3 cut(s)	11, 841, 1157
Eco47I	GGWCC	5 cut(s)	1058, 1137, 1981, 2774, 3046
Eco52I	CGGCCG	1 cut(s)	504
Eco53kI	GAGCTC	2 cut(s)	1698, 3084
Eco57I	CTGAAG	4 cut(s)	966, 2392, 2769, 3176
Eco88I	CYCGRG	1 cut(s)	3872
EcoICRI	GAGCTC	2 cut(s)	1698, 3084
EcoO109I	RGGNCCY	2 cut(s)	1137, 1981
EcoRI	GAATTC	2 cut(s)	919, 1572
EcoT14I	CCWWGG	1 cut(s)	2098
EcoT22I	ATGCAT	1 cut(s)	1215
EcoT38I	GRGCYC	2 cut(s)	1700, 3086
ErhI	CCWWGG	1 cut(s)	2098
Esp3I	CGTCTC	2 cut(s)	1760, 4121
FalI	AAGNNNNNCTT	6 cut(s)	1848, 1880, 2876, 2908, 3339, 3371
FaqI	GGGAC	4 cut(s)	1150, 1266, 1352, 1994
FauI	CCCGC	2 cut(s)	2817, 3691
FauNDI	CATATG	3 cut(s)	1051, 1364, 3715
FbaI	TGATCA	3 cut(s)	1068, 2677, 3241
FblI	GTMKAC	3 cut(s)	1242, 4471, 4615
FokI	GGATG	9 cut(s)	193, 1381, 1541, 2050, 2081, 3004, 3403, 3625, 4397
FriOI	GRGCYC	2 cut(s)	1700, 3086
GlaI	GCGC	3 cut(s)	141, 3181, 4464
GsaI	CCCAGC	4 cut(s)	59, 789, 1137, 1981
GsuI	CTGGAG	2 cut(s)	131, 1714
HaeII	RGCGCY	1 cut(s)	143
HapII	CCGG	7 cut(s)	175, 199, 653, 1029, 1177, 2121, 4619
HgaI	GACGC	1 cut(s)	2387
HhaI	GCGC	3 cut(s)	142, 3182, 4465
Hin6I	GCGC	3 cut(s)	140, 3180, 4463
HinP1I	GCGC	3 cut(s)	140, 3180, 4463
HincII	GTYRAC	2 cut(s)	1306, 4608
HindII	GTYRAC	2 cut(s)	1306, 4608
HindIII	AAGCTT	4 cut(s)	1587, 1671, 3767, 4262
HpaI	GTTAAC	1 cut(s)	1306
HpaII	CCGG	7 cut(s)	175, 199, 653, 1029, 1177, 2121, 4619
HphI	GGTGA	5 cut(s)	2135, 2321, 2615, 3485, 4263
HpyCH4IV	ACGT	3 cut(s)	1946, 2003, 2347
HpySE526I	ACGT	3 cut(s)	1946, 2003, 2347
HspAI	GCGC	3 cut(s)	140, 3180, 4463
KflI	GGGWCCC	1 cut(s)	1981
KroI	GCCGGC	1 cut(s)	1028
KroNI	GCCGGC	1 cut(s)	1030
Ksp22I	TGATCA	3 cut(s)	1068, 2677, 3241
KspAI	GTTAAC	1 cut(s)	1306
LmnI	GCTCC	6 cut(s)	86, 112, 1695, 3081, 3835, 4299
MabI	ACCWGGT	1 cut(s)	1830
MaeII	ACGT	3 cut(s)	1946, 2003, 2347
MfeI	CAATTG	6 cut(s)	1917, 2634, 3237, 3375, 3480, 3885
MflI	RGATCY	7 cut(s)	949, 1797, 2106, 3219, 3256, 4059, 4135
MhlI	GDGCHC	7 cut(s)	296, 569, 1700, 2368, 3086, 4260, 4457
MlsI	TGGCCA	1 cut(s)	2337
MluNI	TGGCCA	1 cut(s)	2337
MlyI	GAGTC	5 cut(s)	1248, 2666, 2883, 3485, 3842
MmeI	TCCRAC	3 cut(s)	1399, 2686, 3884
Mox20I	TGGCCA	1 cut(s)	2337
Mph1103I	ATGCAT	1 cut(s)	1215
MroNI	GCCGGC	1 cut(s)	1028
MroXI	GAANNNNTTC	3 cut(s)	1426, 2199, 3924
MscI	TGGCCA	1 cut(s)	2337
MslI	CAYNNNNRTG	6 cut(s)	255, 624, 1290, 1367, 1685, 2628
Msp20I	TGGCCA	1 cut(s)	2337
MspA1I	CMGCKG	2 cut(s)	443, 1718
MspCI	CTTAAG	3 cut(s)	761, 1577, 4343
MspI	CCGG	7 cut(s)	175, 199, 653, 1029, 1177, 2121, 4619
MunI	CAATTG	6 cut(s)	1917, 2634, 3237, 3375, 3480, 3885
Mva1269I	GAATGC	2 cut(s)	3441, 4189
MvnI	CGCG	1 cut(s)	3180
NaeI	GCCGGC	1 cut(s)	1030
NciI	CCSGG	2 cut(s)	175, 1177
NdeI	CATATG	3 cut(s)	1051, 1364, 3715
NgoMIV	GCCGGC	1 cut(s)	1028
NlaIV	GGNNCC	9 cut(s)	239, 1059, 1138, 1799, 1982, 1983, 3679, 4061, 4137
NmeAIII	GCCGAG	2 cut(s)	458, 532
NmuCI	GTSAC	5 cut(s)	646, 691, 1283, 1720, 2491
NsiI	ATGCAT	1 cut(s)	1215
NspI	RCATGY	2 cut(s)	1217, 3652
NspV	TTCGAA	3 cut(s)	230, 4149, 4426
OliI	CACNNNNGTG	1 cut(s)	1290
PaeI	GCATGC	1 cut(s)	3652
PagI	TCATGA	3 cut(s)	3528, 4099, 4198
PaqCI	CACCTGC	2 cut(s)	1754, 4040
PceI	AGGCCT	1 cut(s)	4025
PctI	GAATGC	2 cut(s)	3441, 4189
PdiI	GCCGGC	1 cut(s)	1030
PdmI	GAANNNNTTC	3 cut(s)	1426, 2199, 3924
PfeI	GAWTC	9 cut(s)	273, 1881, 2929, 3004, 3200, 3226, 3538, 4168, 4268
PflMI	CCANNNNNTGG	1 cut(s)	4052
PfoI	TCCNGGA	2 cut(s)	108, 276
PleI	GAGTC	5 cut(s)	1248, 2666, 2882, 3484, 3842
PpsI	GAGTC	5 cut(s)	1248, 2666, 2882, 3484, 3842
PpuMI	RGGWCCY	2 cut(s)	1137, 1981
PshAI	GACNNNNGTC	2 cut(s)	2612, 3852
PsiI	TTATAA	1 cut(s)	909
Psp124BI	GAGCTC	2 cut(s)	1700, 3086
Psp1406I	AACGTT	1 cut(s)	2003
Psp5II	RGGWCCY	2 cut(s)	1137, 1981
PspFI	CCCAGC	4 cut(s)	55, 785, 1133, 1977
PspN4I	GGNNCC	9 cut(s)	239, 1059, 1138, 1799, 1982, 1983, 3679, 4061, 4137
PspPPI	RGGWCCY	2 cut(s)	1137, 1981
PstI	CTGCAG	3 cut(s)	1765, 2911, 3581
PstNI	CAGNNNCTG	1 cut(s)	2597
PsuI	RGATCY	7 cut(s)	949, 1797, 2106, 3219, 3256, 4059, 4135
PvuII	CAGCTG	2 cut(s)	443, 1718
RsaI	GTAC	9 cut(s)	597, 1732, 1750, 2143, 2234, 2847, 3809, 3994, 4447
RsaNI	GTAC	9 cut(s)	596, 1731, 1749, 2142, 2233, 2846, 3808, 3993, 4446
RseI	CAYNNNNRTG	6 cut(s)	255, 624, 1290, 1367, 1685, 2628
SacI	GAGCTC	2 cut(s)	1700, 3086
SchI	GAGTC	5 cut(s)	1248, 2666, 2883, 3485, 3842
SduI	GDGCHC	7 cut(s)	296, 569, 1700, 2368, 3086, 4260, 4457
SexAI	ACCWGGT	1 cut(s)	1830
SfcI	CTRYAG	5 cut(s)	1761, 2907, 3577, 3930, 4458
SfuI	TTCGAA	3 cut(s)	230, 4149, 4426
SinI	GGWCC	5 cut(s)	1058, 1137, 1981, 2774, 3046
SmiI	ATTTAAAT	1 cut(s)	3729
SmiMI	CAYNNNNRTG	6 cut(s)	255, 624, 1290, 1367, 1685, 2628
SmlI	CTYRAG	6 cut(s)	761, 854, 986, 1577, 3770, 4343
SmoI	CTYRAG	6 cut(s)	761, 854, 986, 1577, 3770, 4343
SpeI	ACTAGT	2 cut(s)	1289, 2611
SphI	GCATGC	1 cut(s)	3652
SseBI	AGGCCT	1 cut(s)	4025
SsiI	CCGC	9 cut(s)	178, 503, 851, 1561, 2824, 3178, 3491, 3698, 3966
SspI	AATATT	2 cut(s)	2200, 2958
SstI	GAGCTC	2 cut(s)	1700, 3086
StuI	AGGCCT	1 cut(s)	4025
StyI	CCWWGG	1 cut(s)	2098
SwaI	ATTTAAAT	1 cut(s)	3729
TaiI	ACGT	3 cut(s)	1949, 2006, 2350
TaqII	GACCGA	1 cut(s)	4082
TatI	WGTACW	5 cut(s)	595, 2232, 2845, 3807, 4445
TauI	GCSGC	2 cut(s)	506, 3494
TfiI	GAWTC	9 cut(s)	273, 1881, 2929, 3004, 3200, 3226, 3538, 4168, 4268
TscAI	CASTG	9 cut(s)	318, 1187, 1765, 2265, 2416, 2434, 2746, 4281, 4495
TseFI	GTSAC	5 cut(s)	646, 691, 1283, 1720, 2491
Tsp45I	GTSAC	5 cut(s)	646, 691, 1283, 1720, 2491
TspGWI	ACGGA	4 cut(s)	1050, 3232, 3625, 4235
TspRI	CASTG	9 cut(s)	318, 1187, 1765, 2265, 2416, 2434, 2746, 4281, 4495
Van91I	CCANNNNNTGG	1 cut(s)	4052
Vha464I	CTTAAG	3 cut(s)	761, 1577, 4343
VneI	GTGCAC	2 cut(s)	565, 4453
VpaK11BI	GGWCC	5 cut(s)	1058, 1137, 1981, 2774, 3046
XapI	RAATTY	7 cut(s)	305, 919, 1572, 1819, 2323, 2507, 3724
XbaI	TCTAGA	1 cut(s)	3130
XceI	RCATGY	2 cut(s)	1217, 3652
XmiI	GTMKAC	3 cut(s)	1242, 4471, 4615
XmnI	GAANNNNTTC	3 cut(s)	1426, 2199, 3924
Zsp2I	ATGCAT	1 cut(s)	1215

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.