Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000006

Orthogroup ID

OG0007932

Physical Location & Seq

Genomic Coordinates Forward (+)

28427715 .. 28435220

Gene Structure 7506 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug06G0179900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2103 bp

ATGGCTCAGTACAGACAGTCAGGGATGGAGAGGTTGGGATTACGTGGCAGCAACGGCGGGGAAGGACCAGATCACGTCGCTATCGGGATCCGAACGGGTCTACATAAACCGGGTCGGACTCGCCGATCGGGTCGATCCCCACCTAGAATCTCTACTTGTGCTTTAGTTCTCGTTCTCTCCTTGGTTCTCCTTTTTACTGTTGCCGCCTACTTTTACCTCTCCCTCAGCACCACCACACCCACAGGTGCGGAAATAAATAGTAATCGTGCTCAGGAAGATGATTCGAGGAATGATTCTGACTTTCTCACAAATGTGACACGCACTGAGACTTCTAAAGTGCTTAAGTTTGGGAAGGGTTCGGTAACGCATGGCCGGGATTCTAGGTATTGGGATAAAGATGATAGGAGAAGGGATGAAGACTATAATGAGGATGTGGTGGAGCATGGTGGCGCAGGTGTTGATGATGGATCTACTCGTGCGACTCAGGTTAAGAACAGTAAGAACAAGTCCGAGAATGATGACTTTCTTAAAAGTTCCAATAAGAAAGCTGGATTGTACAATGAAGCTGGGCGCAACGAGTTGAAAATTTATGAAGCAGAGTATGAGGCATCTTTGAAGAACAATCGACAGTCTAATGATGTATATTTGGAAACGCGAAATGACGTTATTGATGCTGATGATGAGTATGATGATGGGATTGATTCTCATGAAACTCATATGGAAGAATATGATGATACTAGACATCAAAATGGTGACCATTTTAGTGAAGAAAAATTACATGATGAAGGTGGTAGAGAGTCCATTGATCTTCCTGATGCTGGAATCAATTATGAAAATGTCTCCAAGAAGGTTGATAAAGTCTCCACCAATTCATTTAATGAGCACTCTGCCCAGTACTCTCGGAACCTTGATGAAGTTAACACAAATTCTAGGCATGTTGGTGTAATTTCCGGTCATTCTTCAAGAAAATCGCACTCAGAATCAAAAAGGAAAGCAAAGCGCCACAAATCTTCTGGTTCCTCTTGTGAGATGAAGTTCTTAAACTCCACTGCACAGCTTATAGAGCCTTTAGAAAGTAGAAAATTTGCTAGATTTTCCCTGGAGTATACTGAAATAGAAGACAAGCCCGAAGGAGAAGAGCAATGGGAACCTAGATTTGCAGGACATCAGACTTTGCAAGAACGGGAAAATTCTTTTTTGGCACGTGATCAAAAAATTAACTGTGGCTTTGTTAAAGGTCCTAAAGGATCTCCAAGCACTGGATTTGACTTGTCAGAGGATGATGCAAATTATATCAGCAGATGCCACATTGCTGTTAGCTCTTGTATCTTTGGAAATTCAGATCGCTTGAGAACACCTTACGGTAAAATGGTCTCTCGTTTGTCAAGGAAGAATGTTTGCTTTGTTATGTTCATCGACGAGATTACGTTGCGTACCCTTTCTTCAGAAGGGCACACACTAGATAGCATTGGTTTTATTGGTTTGTGGAAGATTGTTGTGGTGAAGAACCTACCATATACTGATATGCGGAGAGTGGGAAAGATACCAAAGCTTTTGCCTCATAGGCTTTTTCCTTCTGCAAGGTATTCAATCTGGTTGGACAGCAAGTTGCGTCTTCAACTTGACCCCTTACTCATATTGGAATATTTTTTGTGGCGAAAAGGTCATGAGTATGCAATTTCGAATCACTATGATCGACACTGTGTATGGGAAGAGGTTGCCCAGAATAAAAAATTGAACAAGTATAACCATACCATCATAGATCAACAATTTGCATTTTACCAGGACGATGGTCTCACAAGATTCAACGCATTGGATCCGAACAAGCTTCTCCCCAGCAATGTGCCAGAAGGTTCTTTTATCATCCGGGCACACACTCCAATGTCAAATTTGTTTTCCTGTCTTTGGTTCAATGAGGTTGAGCGGTTTACTCCTCGGGATCAGCTAAGTTTTGCCTATACATACCAGAAATTAAGAAGGATGAATCCTGAAAAACCTTTTCGTCTTCATATGTTCAAGGATTGTGAGAGAAGAGCCATAGCTAAGTTGTTTCGCCACAGGTCACAAGAGAAGTCGAGTACTCGGCAAAGAGCTACCGAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000325 GO:0001101 GO:0003674 GO:0003824 GO:0004888 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0006810 GO:0006873 GO:0006875 GO:0006950 GO:0006970 GO:0007154 GO:0007165 GO:0008150 GO:0008281 GO:0009628 GO:0009651 GO:0009719 GO:0009725 GO:0009737 GO:0009738 GO:0009755 GO:0009987 GO:0010033 GO:0010118 GO:0015399 GO:0015405 GO:0016020 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0019725 GO:0022804 GO:0022857 GO:0023052 GO:0030003 GO:0030004 GO:0030007 GO:0031090 GO:0032870 GO:0033993 GO:0038023 GO:0042221 GO:0042592 GO:0042623 GO:0042626 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043492 GO:0044422 GO:0044424 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0048878 GO:0050789 GO:0050794 GO:0050801 GO:0050896 GO:0051179 GO:0051234 GO:0051716 GO:0055065 GO:0055067 GO:0055075 GO:0055080 GO:0055082 GO:0055085 GO:0060089 GO:0065007 GO:0065008 GO:0070887 GO:0071215 GO:0071229 GO:0071310 GO:0071396 GO:0071495 GO:0097305 GO:0097306 GO:0098588 GO:0098771 GO:0098805 GO:1901527 GO:1901700 GO:1901701

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

ABC_membrane ABC_tran

Protein Analysis

700

Amino Acids

80.39

Weight (kDa)

7.67

Isoelectric Point (pI)

44.83

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
TOD1_MUCI70	PF04765	367 - 686	8.2e-144	TOD1/MUCI70, glycosyltransferase-like domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007932)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G04120 AT1G04120 AT1G04120
fragaria_vesca	FvH4_2g20350 FvH4_2g20350 FvH4_2g20350
malus_domestica	MD05G1187600.v1.1 MD10G1175300.v1.1
prunus_persica	Prupe.8G214600_v2.0.a1 Prupe.8G214600_v2.0.a1 Prupe.8G214600_v2.0.a1
pyrus_communis	pycom05g17240 pycom10g15100
rosa_chinensis	RchiOBHm_Chr6g0286471
rosa_laevigata	RLG00000012569
rosa_multiflora	Rmu_sc0034370.1_g000001
rosa_roxburghii	Rroxscaffold_7G00182310
rosa_rugosa	Rorug06G0179900 Rorug06G0180000
rosa_samantha	Rh6AG292200 Rh6BG295800 Rh6CG296500 Rh6DG288300
rosa_wichuraiana	Rw6G025200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	443
Acc36I	ACCTGC	1 cut(s)	443
AccB7I	CCANNNNNTGG	1 cut(s)	1259
AccBSI	CCGCTC	1 cut(s)	1924
AccI	GTMKAC	2 cut(s)	100, 1106
AccII	CGCG	1 cut(s)	655
AciI	CCGC	5 cut(s)	57, 204, 248, 1528, 1924
AclWI	GGATC	8 cut(s)	82, 95, 129, 475, 1255, 1811, 1824, 1947
AcoI	YGGCCR	1 cut(s)	370
AcsI	RAATTY	6 cut(s)	585, 925, 1082, 1189, 1336, 1888
AcuI	CTGAAG	1 cut(s)	1428
AcvI	CACGTG	1 cut(s)	1205
AfaI	GTAC	5 cut(s)	11, 557, 896, 1435, 2080
AfiI	CCNNNNNNNGG	3 cut(s)	818, 1259, 1905
AflII	CTTAAG	1 cut(s)	341
AgsI	TTSAA	9 cut(s)	583, 616, 963, 1590, 1619, 1738, 1807, 1912, 2017
AjiI	CACGTC	1 cut(s)	76
AjnI	CCWGG	2 cut(s)	1098, 1782
AleI	CACNNNNGTG	1 cut(s)	311
AluBI	AGCT	9 cut(s)	548, 566, 1057, 1320, 1552, 1828, 1945, 2042, 2093
AluI	AGCT	9 cut(s)	548, 566, 1057, 1320, 1552, 1828, 1945, 2042, 2093
Alw21I	GWGCWC	2 cut(s)	271, 885
Alw26I	GTCTC	5 cut(s)	320, 844, 865, 1378, 1799
AlwI	GGATC	8 cut(s)	82, 95, 129, 475, 1255, 1811, 1824, 1947
Ama87I	CYCGRG	1 cut(s)	1935
AoxI	GGCC	1 cut(s)	370
ApeKI	GCWGC	1 cut(s)	48
ApoI	RAATTY	6 cut(s)	585, 925, 1082, 1189, 1336, 1888
AspLEI	GCGC	3 cut(s)	452, 573, 1002
AspS9I	GGNCC	2 cut(s)	65, 1238
AsuC2I	CCSGG	3 cut(s)	111, 374, 1868
AsuHPI	GGTGA	2 cut(s)	764, 1513
AsuII	TTCGAA	1 cut(s)	1682
AvaI	CYCGRG	1 cut(s)	1935
AvaII	GGWCC	2 cut(s)	65, 1238
BaeGI	GKGCMC	2 cut(s)	1455, 1873
BamHI	GGATCC	2 cut(s)	87, 1816
BarI	GAAGNNNNNNTAC	4 cut(s)	759, 791, 1426, 1458
BauI	CACGAG	1 cut(s)	474
BbrPI	CACGTG	1 cut(s)	1205
BbsI	GAAGAC	4 cut(s)	423, 1125, 1607, 1997
Bbv12I	GWGCWC	2 cut(s)	271, 885
BbvCI	CCTCAGC	1 cut(s)	224
BbvI	GCAGC	1 cut(s)	60
BccI	CCATC	5 cut(s)	19, 458, 686, 1763, 1784
BceAI	ACGGC	1 cut(s)	70
BciT130I	CCWGG	2 cut(s)	1100, 1784
BclI	TGATCA	1 cut(s)	1207
BcnI	CCSGG	3 cut(s)	111, 374, 1868
BcoDI	GTCTC	5 cut(s)	320, 844, 865, 1378, 1799
BfaI	CTAG	7 cut(s)	144, 381, 738, 930, 1089, 1152, 1460
BfoI	RGCGCY	1 cut(s)	1003
BfrI	CTTAAG	1 cut(s)	341
BfuAI	ACCTGC	1 cut(s)	443
BglI	GCCNNNNNGGC	1 cut(s)	1564
BisI	GCNGC	2 cut(s)	49, 204
BlsI	GCNGC	2 cut(s)	50, 205
BmcAI	AGTACT	2 cut(s)	896, 2080
Bme1390I	CCNGG	5 cut(s)	111, 374, 1100, 1784, 1868
Bme18I	GGWCC	2 cut(s)	65, 1238
BmeT110I	CYCGRG	1 cut(s)	1935
BmgBI	CACGTC	1 cut(s)	76
BmgT120I	GGNCC	2 cut(s)	65, 1238
BmiI	GGNNCC	5 cut(s)	89, 905, 1018, 1149, 1818
BmrFI	CCNGG	5 cut(s)	111, 374, 1100, 1784, 1868
BmrI	ACTGGG	1 cut(s)	886
BmsI	GCATC	5 cut(s)	617, 661, 805, 1273, 1292
BmuI	ACTGGG	1 cut(s)	886
BoxI	GACNNNNGTC	1 cut(s)	1791
BpiI	GAAGAC	4 cut(s)	423, 1125, 1607, 1997
BpmI	CTGGAG	1 cut(s)	1121
Bpu10I	CCTNAGC	2 cut(s)	224, 270
Bpu14I	TTCGAA	1 cut(s)	1682
BpuEI	CTTGAG	1 cut(s)	1369
BpuMI	CCSGG	3 cut(s)	111, 374, 1868
BsaAI	YACGTR	2 cut(s)	44, 1205
BsaI	GGTCTC	2 cut(s)	1378, 1799
BsaJI	CCNNGG	3 cut(s)	180, 1098, 1934
BsaWI	WCCGGW	1 cut(s)	950
Bsc4I	CCNNNNNNNGG	3 cut(s)	818, 1259, 1905
Bse1I	ACTGG	2 cut(s)	892, 1264
Bse3DI	GCAATG	3 cut(s)	1148, 1308, 1846
BseBI	CCWGG	2 cut(s)	1100, 1784
BseDI	CCNNGG	3 cut(s)	180, 1098, 1934
BseGI	GGATG	6 cut(s)	30, 418, 436, 1285, 1863, 1986
BseLI	CCNNNNNNNGG	3 cut(s)	818, 1259, 1905
BseMI	GCAATG	3 cut(s)	1148, 1308, 1846
BseMII	CTCAG	6 cut(s)	20, 238, 284, 315, 497, 990
BseNI	ACTGG	2 cut(s)	892, 1264
BseRI	GAGGAG	1 cut(s)	1923
BseSI	GKGCMC	2 cut(s)	1455, 1873
BseXI	GCAGC	1 cut(s)	60
BseYI	CCCAGC	2 cut(s)	566, 1835
BsgI	GTGCAG	1 cut(s)	1035
Bsh1236I	CGCG	1 cut(s)	655
Bsh1285I	CGRYCG	1 cut(s)	128
BshFI	GGCC	1 cut(s)	372
BsiEI	CGRYCG	1 cut(s)	128
BsiHKAI	GWGCWC	2 cut(s)	271, 885
BsiHKCI	CYCGRG	1 cut(s)	1935
BsiSI	CCGG	4 cut(s)	110, 373, 951, 1867
BslI	CCNNNNNNNGG	3 cut(s)	818, 1259, 1905
BsmAI	GTCTC	5 cut(s)	320, 844, 865, 1378, 1799
BsnI	GGCC	1 cut(s)	372
Bso31I	GGTCTC	2 cut(s)	1378, 1799
BsoBI	CYCGRG	1 cut(s)	1935
Bsp119I	TTCGAA	1 cut(s)	1682
Bsp1286I	GDGCHC	4 cut(s)	271, 885, 1455, 1873
Bsp1407I	TGTACA	1 cut(s)	555
BspACI	CCGC	5 cut(s)	57, 204, 248, 1528, 1924
BspANI	GGCC	1 cut(s)	372
BspCNI	CTCAG	6 cut(s)	19, 237, 283, 316, 496, 989
BspFNI	CGCG	1 cut(s)	655
BspHI	TCATGA	2 cut(s)	706, 1666
BspLI	GGNNCC	5 cut(s)	89, 905, 1018, 1149, 1818
BspMI	ACCTGC	1 cut(s)	443
BspPI	GGATC	8 cut(s)	82, 95, 129, 475, 1255, 1811, 1824, 1947
BspQI	GCTCTTC	2 cut(s)	1131, 2026
BspT104I	TTCGAA	1 cut(s)	1682
BspTI	CTTAAG	1 cut(s)	341
BspTNI	GGTCTC	2 cut(s)	1378, 1799
BsrBI	CCGCTC	1 cut(s)	1924
BsrDI	GCAATG	3 cut(s)	1148, 1308, 1846
BsrGI	TGTACA	1 cut(s)	555
BsrI	ACTGG	2 cut(s)	892, 1264
BssECI	CCNNGG	3 cut(s)	180, 1098, 1934
BssNAI	GTATAC	1 cut(s)	1107
BssSI	CACGAG	1 cut(s)	474
BssT1I	CCWWGG	1 cut(s)	180
Bst1107I	GTATAC	1 cut(s)	1107
Bst2BI	CACGAG	1 cut(s)	474
Bst2UI	CCWGG	2 cut(s)	1100, 1784
Bst4CI	ACNGT	7 cut(s)	18, 199, 497, 630, 1223, 1364, 1703
Bst6I	CTCTTC	3 cut(s)	1131, 1707, 2026
BstAFI	CTTAAG	1 cut(s)	341
BstAUI	TGTACA	1 cut(s)	555
BstBAI	YACGTR	2 cut(s)	44, 1205
BstBI	TTCGAA	1 cut(s)	1682
BstDEI	CTNAG	8 cut(s)	6, 224, 270, 324, 483, 976, 1946, 2043
BstEII	GGTNACC	1 cut(s)	752
BstF5I	GGATG	6 cut(s)	30, 418, 436, 1285, 1863, 1986
BstFNI	CGCG	1 cut(s)	655
BstH2I	RGCGCY	1 cut(s)	1003
BstHHI	GCGC	3 cut(s)	452, 573, 1002
BstMAI	GTCTC	5 cut(s)	320, 844, 865, 1378, 1799
BstMCI	CGRYCG	1 cut(s)	128
BstMWI	GCNNNNNNNGC	3 cut(s)	54, 1063, 1564
BstNI	CCWGG	2 cut(s)	1100, 1784
BstNSI	RCATGY	1 cut(s)	938
BstPAI	GACNNNNGTC	1 cut(s)	1791
BstPI	GGTNACC	1 cut(s)	752
BstSCI	CCNGG	5 cut(s)	109, 372, 1098, 1782, 1866
BstSLI	GKGCMC	2 cut(s)	1455, 1873
BstUI	CGCG	1 cut(s)	655
BstV1I	GCAGC	1 cut(s)	60
BstV2I	GAAGAC	4 cut(s)	423, 1125, 1607, 1997
BstX2I	RGATCY	4 cut(s)	87, 467, 1247, 1816
BstXI	CCANNNNNNTGG	1 cut(s)	1790
BstYI	RGATCY	4 cut(s)	87, 467, 1247, 1816
BstZ17I	GTATAC	1 cut(s)	1107
BsuRI	GGCC	1 cut(s)	372
BtrI	CACGTC	1 cut(s)	76
BtsCI	GGATG	6 cut(s)	30, 418, 436, 1285, 1863, 1986
BtsI	GCAGTG	1 cut(s)	1047
BtsIMutI	CAGTG	4 cut(s)	321, 1047, 1257, 1699
BveI	ACCTGC	1 cut(s)	443
CciI	TCATGA	2 cut(s)	706, 1666
CfoI	GCGC	3 cut(s)	452, 573, 1002
Cfr13I	GGNCC	2 cut(s)	65, 1238
CseI	GACGC	1 cut(s)	1601
Csp6I	GTAC	5 cut(s)	10, 556, 895, 1434, 2079
CviAII	CATG	6 cut(s)	368, 443, 707, 779, 935, 1667
CviQI	GTAC	5 cut(s)	10, 556, 895, 1434, 2079
DdeI	CTNAG	8 cut(s)	6, 224, 270, 324, 483, 976, 1946, 2043
EaeI	YGGCCR	1 cut(s)	370
Eam1104I	CTCTTC	3 cut(s)	1131, 1707, 2026
EarI	CTCTTC	3 cut(s)	1131, 1707, 2026
Eco130I	CCWWGG	1 cut(s)	180
Eco31I	GGTCTC	2 cut(s)	1378, 1799
Eco47I	GGWCC	2 cut(s)	65, 1238
Eco57I	CTGAAG	1 cut(s)	1428
Eco72I	CACGTG	1 cut(s)	1205
Eco88I	CYCGRG	1 cut(s)	1935
Eco91I	GGTNACC	1 cut(s)	752
EcoO109I	RGGNCCY	1 cut(s)	1238
EcoO65I	GGTNACC	1 cut(s)	752
EcoRII	CCWGG	2 cut(s)	1098, 1782
EcoT14I	CCWWGG	1 cut(s)	180
ErhI	CCWWGG	1 cut(s)	180
FaeI	CATG	6 cut(s)	371, 446, 710, 782, 938, 1670
FatI	CATG	6 cut(s)	367, 442, 706, 778, 934, 1666
FauI	CCCGC	1 cut(s)	50
FauNDI	CATATG	2 cut(s)	717, 2010
FbaI	TGATCA	1 cut(s)	1207
FblI	GTMKAC	2 cut(s)	100, 1106
Fnu4HI	GCNGC	2 cut(s)	49, 204
FokI	GGATG	6 cut(s)	37, 425, 443, 1292, 1850, 1993
Fsp4HI	GCNGC	2 cut(s)	49, 204
FspBI	CTAG	7 cut(s)	144, 381, 738, 930, 1089, 1152, 1460
GlaI	GCGC	3 cut(s)	451, 572, 1001
GluI	GCNGC	2 cut(s)	49, 204
GsaI	CCCAGC	2 cut(s)	570, 1839
GsuI	CTGGAG	1 cut(s)	1121
HaeII	RGCGCY	1 cut(s)	1003
HaeIII	GGCC	1 cut(s)	372
HapII	CCGG	4 cut(s)	110, 373, 951, 1867
HgaI	GACGC	1 cut(s)	1601
HhaI	GCGC	3 cut(s)	452, 573, 1002
Hin1II	CATG	6 cut(s)	371, 446, 710, 782, 938, 1670
Hin6I	GCGC	3 cut(s)	450, 571, 1000
HinP1I	GCGC	3 cut(s)	450, 571, 1000
HincII	GTYRAC	1 cut(s)	919
HindII	GTYRAC	1 cut(s)	919
HindIII	AAGCTT	2 cut(s)	1550, 1826
HpaI	GTTAAC	1 cut(s)	919
HpaII	CCGG	4 cut(s)	110, 373, 951, 1867
HphI	GGTGA	2 cut(s)	764, 1513
Hpy166II	GTNNAC	4 cut(s)	101, 919, 1107, 1929
Hpy188III	TCNNGA	8 cut(s)	85, 272, 707, 812, 963, 1667, 1937, 1988
Hpy8I	GTNNAC	4 cut(s)	101, 919, 1107, 1929
Hpy99I	CGWCG	2 cut(s)	80, 1421
HpyCH4III	ACNGT	7 cut(s)	18, 199, 497, 630, 1223, 1364, 1703
HpyCH4IV	ACGT	5 cut(s)	43, 75, 663, 1204, 1427
HpyCH4V	TGCA	7 cut(s)	1052, 1160, 1177, 1286, 1580, 1676, 1775
HpyF10VI	GCNNNNNNNGC	3 cut(s)	54, 1063, 1564
HpyF3I	CTNAG	8 cut(s)	6, 224, 270, 324, 483, 976, 1946, 2043
HpySE526I	ACGT	5 cut(s)	43, 75, 663, 1204, 1427
Hsp92II	CATG	6 cut(s)	371, 446, 710, 782, 938, 1670
HspAI	GCGC	3 cut(s)	450, 571, 1000
Ksp22I	TGATCA	1 cut(s)	1207
KspAI	GTTAAC	1 cut(s)	919
LguI	GCTCTTC	2 cut(s)	1131, 2026
LmnI	GCTCC	1 cut(s)	439
Lsp1109I	GCAGC	1 cut(s)	60
LweI	GCATC	5 cut(s)	617, 661, 805, 1273, 1292
MaeI	CTAG	7 cut(s)	144, 381, 738, 930, 1089, 1152, 1460
MaeII	ACGT	5 cut(s)	43, 75, 663, 1204, 1427
MaeIII	GTNAC	4 cut(s)	313, 361, 752, 2061
MbiI	CCGCTC	1 cut(s)	1924
MflI	RGATCY	4 cut(s)	87, 467, 1247, 1816
MhlI	GDGCHC	4 cut(s)	271, 885, 1455, 1873
MlyI	GAGTC	3 cut(s)	112, 475, 806
MmeI	TCCRAC	2 cut(s)	95, 1578
MseI	TTAA	9 cut(s)	342, 489, 528, 876, 918, 1040, 1218, 1233, 1973
MslI	CAYNNNNRTG	6 cut(s)	311, 747, 762, 939, 1671, 1880
MspCI	CTTAAG	1 cut(s)	341
MspI	CCGG	4 cut(s)	110, 373, 951, 1867
MspR9I	CCNGG	5 cut(s)	111, 374, 1100, 1784, 1868
MvaI	CCWGG	2 cut(s)	1100, 1784
MvnI	CGCG	1 cut(s)	655
MwoI	GCNNNNNNNGC	3 cut(s)	54, 1063, 1564
NciI	CCSGG	3 cut(s)	111, 374, 1868
NdeI	CATATG	2 cut(s)	717, 2010
NlaIII	CATG	6 cut(s)	371, 446, 710, 782, 938, 1670
NlaIV	GGNNCC	5 cut(s)	89, 905, 1018, 1149, 1818
NmeAIII	GCCGAG	1 cut(s)	2062
NmuCI	GTSAC	3 cut(s)	313, 752, 2061
NspI	RCATGY	1 cut(s)	938
NspV	TTCGAA	1 cut(s)	1682
OliI	CACNNNNGTG	1 cut(s)	311
PagI	TCATGA	2 cut(s)	706, 1666
PaqCI	CACCTGC	1 cut(s)	443
PciSI	GCTCTTC	2 cut(s)	1131, 2026
PcsI	WCGNNNNNNNCGW	1 cut(s)	121
PflMI	CCANNNNNTGG	1 cut(s)	1259
PkrI	GCNGC	2 cut(s)	50, 205
Ple19I	CGATCG	1 cut(s)	128
PleI	GAGTC	3 cut(s)	112, 475, 805
PmaCI	CACGTG	1 cut(s)	1205
PmlI	CACGTG	1 cut(s)	1205
PpsI	GAGTC	3 cut(s)	112, 475, 805
Ppu21I	YACGTR	2 cut(s)	44, 1205
PpuMI	RGGWCCY	1 cut(s)	1238
PshAI	GACNNNNGTC	1 cut(s)	1791
Psp5II	RGGWCCY	1 cut(s)	1238
Psp6I	CCWGG	2 cut(s)	1098, 1782
PspCI	CACGTG	1 cut(s)	1205
PspEI	GGTNACC	1 cut(s)	752
PspFI	CCCAGC	2 cut(s)	566, 1835
PspGI	CCWGG	2 cut(s)	1098, 1782
PspN4I	GGNNCC	5 cut(s)	89, 905, 1018, 1149, 1818
PspPI	GGNCC	2 cut(s)	65, 1238
PspPPI	RGGWCCY	1 cut(s)	1238
PsuI	RGATCY	4 cut(s)	87, 467, 1247, 1816
PvuI	CGATCG	1 cut(s)	128
RsaI	GTAC	5 cut(s)	11, 557, 896, 1435, 2080
RsaNI	GTAC	5 cut(s)	10, 556, 895, 1434, 2079
RseI	CAYNNNNRTG	6 cut(s)	311, 747, 762, 939, 1671, 1880
SapI	GCTCTTC	2 cut(s)	1131, 2026
SaqAI	TTAA	9 cut(s)	342, 489, 528, 876, 918, 1040, 1218, 1233, 1973
SatI	GCNGC	2 cut(s)	49, 204
Sau96I	GGNCC	2 cut(s)	65, 1238
ScaI	AGTACT	2 cut(s)	896, 2080
SchI	GAGTC	3 cut(s)	112, 475, 806
ScrFI	CCNGG	5 cut(s)	111, 374, 1100, 1784, 1868
SduI	GDGCHC	4 cut(s)	271, 885, 1455, 1873
SfaNI	GCATC	5 cut(s)	617, 661, 805, 1273, 1292
SfuI	TTCGAA	1 cut(s)	1682
SinI	GGWCC	2 cut(s)	65, 1238
SmiMI	CAYNNNNRTG	6 cut(s)	311, 747, 762, 939, 1671, 1880
SmlI	CTYRAG	2 cut(s)	341, 1348
SmoI	CTYRAG	2 cut(s)	341, 1348
SsiI	CCGC	5 cut(s)	57, 204, 248, 1528, 1924
SspI	AATATT	1 cut(s)	1646
SspMI	CTAG	7 cut(s)	144, 381, 738, 930, 1089, 1152, 1460
StyD4I	CCNGG	5 cut(s)	109, 372, 1098, 1782, 1866
StyI	CCWWGG	1 cut(s)	180
TaaI	ACNGT	7 cut(s)	18, 199, 497, 630, 1223, 1364, 1703
TaiI	ACGT	5 cut(s)	46, 78, 666, 1207, 1430
TaqI	TCGA	7 cut(s)	133, 284, 625, 1416, 1682, 1696, 2075
TatI	WGTACW	4 cut(s)	9, 555, 894, 2078
TauI	GCSGC	1 cut(s)	206
Tru1I	TTAA	9 cut(s)	342, 489, 528, 876, 918, 1040, 1218, 1233, 1973
Tru9I	TTAA	9 cut(s)	342, 489, 528, 876, 918, 1040, 1218, 1233, 1973
TscAI	CASTG	4 cut(s)	328, 1054, 1264, 1706
TseFI	GTSAC	3 cut(s)	313, 752, 2061
TseI	GCWGC	1 cut(s)	48
Tsp45I	GTSAC	3 cut(s)	313, 752, 2061
TspRI	CASTG	4 cut(s)	328, 1054, 1264, 1706
Van91I	CCANNNNNTGG	1 cut(s)	1259
Vha464I	CTTAAG	1 cut(s)	341
VpaK11BI	GGWCC	2 cut(s)	65, 1238
XapI	RAATTY	6 cut(s)	585, 925, 1082, 1189, 1336, 1888
XceI	RCATGY	1 cut(s)	938
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1010
XmiI	GTMKAC	2 cut(s)	100, 1106
XspI	CTAG	7 cut(s)	144, 381, 738, 930, 1089, 1152, 1460
ZrmI	AGTACT	2 cut(s)	896, 2080

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.