Basic Information

Type: Sequence Only

Biological Identity

Species

rosa_samantha

Chromosome

Unknown

Orthogroup ID

OG0007932

Physical Location & Seq

Genomic Coordinates Reverse (-)

0 .. 0

Gene Structure 1 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6AG292200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 4626 bp

ATGGGTCTCACTCTCTTGCTTCACAAAATCTCAGCTTCTTCTTCATCTTCAAACCCAGCTCAGCTATCCCAGACGACCCCTTTGGGAGCTGTGCAAGGTCTGCCCTTCCTGGAGCTGTCTTCTATTGTCATCAATTTGGCGCTAGTTCTTGCGTTTCTCTTCATCGTTTCGGCCCGGCGGATGGTTGTCTGTCTGGGCCGGATTAGGGTGCTGAAAGACGATTTGGGTTCGAATGGGAACCCAATTCAGCATGATAGTGCTGTTGATAGGGGAATCCAGGAGGTTAGAGTGGGCACAGACTTTAAATTTTCAGTGTTCTGCTGCTTCTATGTGTTGTTTGTGCAAGTTGTGGTGTTGGGTTTTGATGGGGTTGGTTTGGTTAGAGGAGGAGGGGTTGGTAGTGGGAGGGTGGTGGTTTGGTCTGTGCTTTGCTTACCAGCTGCACAGGGCTTAGCTTGGTTTGTGATGAGCTTCTCCGCTTTGCATTGTAAGTTCAAGGCGGCCGAGAAGTTCCCATTGCTGTTGAGGTGTTGGTGGGCTGTCTCCTTTGTGCTTTGCTTGTGCACTTTGTATGTTGATGGGAGAGGTTTTGTACAAGAAGGCTCGATACACCTTCATTCTCATGTTGTGGCTAATTTCGCAGTCACACCGGCCCTAGCGTTTCTCTGTTTCGTTGGAGTTAGGGGTGTGACTGGTGTGATTGTTTGTAGAAACTCTGAGCTTCAAGAGCCATTGCTTGAAGAAGAAGCAGGGTGTCTTAAGGTTACTCCTTATAGTGATGCTGGGATTTTCAGCTTGGCAACACTATCTTGGATAAACCCTCTTCTTTCAATAGGGGCAAAGAGACCGCTTGAGATCAAGGATATTCCTCTTCTTGCACCACAAGATCGATCCAAGACCAATTATAAGGTCTTGAATTCAAATTGGGAGAAATTGAAGGCTGAAGATCCTTCAAAGCAGCCTTCTTTAGCCTGGGCAATTCTCAAGTCATTTTGGAAGGAGGCAGCTTGTAATGCCATTTTCGCCGGTTTGAACACTCTTGTTTCATACGTGGGTCCGTATATGATCAGCTATTTCGTTGATTACTTGGGGGGAATAGAGACTTTCCCCCATGAAGGGTATATCCTTGCTGGGACCTTCTTTGCAGCGAAGCTAGTTGAGACCTTAACAACCCGGCAGTGGTATCTTGGGGTGGACATTTTGGGTATGCATGTAAGATCAGCTCTAACGGCAATGGTATACCGAAAGGGACTCAGGCTTTCCAGCTCAGCCAAGCAAAGTCACACAAGTGGAGAGATTGTTAACTACATGGCTGTTGATGTGCAGAGGGTAGGGGACTATTCCTGGTATCTCCATGACATATGGATGCTTCCTCTGCAAATTGTTCTTGCCCTTGCAATTTTATACAAGAATGTTGGAATTGCTTCTGTTGCTACATTGATTGCCACCATTATCTCCATTGTTCTTACTGTTCCTTTGGCAAAGATACAAGAAGATTATCAAGACAAGTTGATGACGGCCAAGGATGAAAGAATGAGGAAGACTTCTGAGTGCCTGCGGAACATGAGAATTCTTAAGTTGCAAGCTTGGGAGGACAGATACCGACTGATGTTAGAGGAGATGCGTAGTGTGGAGTTTAAGTATCTACGCAAAGCCCTCTACTCGCAAGCTTTTATCACATTCATGTTCTGGAGCTCTCCTATATTTGTTTCAGCTGTCACTTTCGGTACTTCTGTATTTTTGGGTACTCGTCTCACTGCAGGTGGTGTTCTTTCTGCTCTCGCCACTTTCAGGATCCTCCAAGAACCACTCAGGAATTTCCCTGACCTGGTATCAATGATGGCTCAGACAAAAGTTTCCCTTGATCGTATTTCTGGATTCTTGCAGGAGGAAGAGTTACAAGCAGATGCAACAATTGTCCTGCCACGGGGCATCACAAGCACGTCAATAGAAATTAAAGATGGCGTGTTTAGCTGGGACCCTTCCTCTGTAAGACCAACGTTATCGGGAATACAAATGAAAGTGGAAAGAGGGATGCGTGTTGCTGTATGTGGAATGGTTGGTTCTGGAAAATCAAGTTTTCTCTCTTGCATCCTTGGGGAGATCCCGAAAGTTTCCGGTGAAGTAAAGTTATGTGGTACTGCTGCTTATGTTTCTCAGTCAGCATGGATACAGTCTGGTAATATAGAAGAAAATATTCTTTTTGGCAGCCCAATGGAGAAACCAAAGTACAAGAAGGTTATCCATGCTTGTTCACTGAAAAAGGATTTGGAACTTTTCTCACATGGAGATCAAACCATAATTGGTGATAGGGGTATAAATTTGAGTGGTGGCCAGAAGCAACGTGTGCAGCTTGCAAGGGCACTCTATCAGGATGCTGACATTTATTTACTTGACGACCCCTTCAGTGCAGTTGATGCACACACTGGATCAGAGTTGTTTAAGGAATACATATTGACAGCATTAGAAGACAAAACTGTTGTTTTCGTGACCCATCAAGTCGAATTTCTGCCTTCTGCTGATTTAATCCTGGTTCTTAAAGAAGGGCGCATCATACAAGCAGGAAAATATGATGATCTTTTACAGGCAGGAACTGATTTTAAGACACTAGTCTCAGCTCACCATGATGCAATTGAAGCTATGGATATTCCCAATTATTCGTCAGGCGACTCTGATCACAACTTGTGTCCAGATGGCTCTGTTGGACTTGGCAAAAATCCTGATTTACCAAGCAGCAGTGTTGATTGTTTGGCAAAGGAAGTGCAAGAAGGTCCATCAGCTTCAGAGCAGAAAGCAATTAAAGAGAAAAAGAAGGCAAAGCGGGCAAGAAAGAAGCAGCTTGTACAAGAAGAGGAAAGGGTAAGAGGAAGAGTCAGCATGAAGGTTTACTTGTCATATATGGCTGCAGCATATAAAGGATCGCTGATTCCACTCATAATTATTGCACAAGCAATATTTCAATTCCTTCAAATTGCTAGTAGTTGGTGGATGGCTTGGGCGAATCCCCAAACACAGGGAGATCAGCCTAAAGTGAGTGCTATGGTCCTTCTTGGTGTTTACATGGCCCTTGCATTTGGGAGCTCTTGGTTTATATTTATTAGGGCTGTGTTGGTAGCTACCTTTGGTCTAGAAGCTGCACAGAAATTGTTTCTGAAGATGCTTAGGAGTGTTTTCCGCGCACCAATGTCTTTCTTTGATTCTACTCCTGCTGGACGGATCTTGAATCGTGTATCAATTGATCAAAGTGTGGTGGATCTTGATATTCCTTTTAGACTTGGCGGGTTCGCTTCAACGACAATACAGCTTATAGGCATTGTTGGTGTGATGACAAAAGTTACCTGGCAAGTTTTGCTTCTTGTTGTTCCTATGGCAATTGCTTGTTTGTGGATGCAGAAATACTACATGGCTTCATCAAGGGAATTAGTCCGAATTGTTAGCATTCAGAAATCTCCAATTATCCATCTTTTCGGTGAGTCAATTGCAGGGGCGGCCACAATAAGAGGATTTGGACAGGAAAAAAGGTTCATGAAAAGGAATCTTTATTTCCTTGATTGTTTTGCTCGCCCATTCTTCTGCAGTATTGCTGCTATTGAATGGCTCTGCCTACGGATGGAATTACTCTCGACTTTTGTATTTGCTTTCTGCATGCTTTTACTTGTGAGCTTTCCACATGGAACCATTGATCCAAGCATGGCGGGTCTTGCTGTAACATATGGCTTGAATTTAAATGCACGGTTATCACGGTGGATACTTAGCTTTTGCAAGCTTGAGAACAAAATTATTTCCATAGAAAGGATTTATCAGTACAGTCAAATCCCAAGTGAAGCTCCCCCAGTTATTGAGGACTCTCGTCCTCCAACTAGATGGCCAGAGAATGGAACAATTGAACTACATGATTTAAAGGTTCGTTACAAGGAAAATCTTCCCGTAGTGCTTCATGGGGTAACTTGCACTTTTCCTGGCGGAAAGAAGATTGGAATTGTTGGCCGTACTGGAAGTGGCAAATCCACCTTGATCCAGGCCTTATTTAGACTGATTGAACCAGCAGGTGGGAGGATCCTTATAGACAAAATAGATATTTCAACGCTCGGTCTTCATGATCTTCGTAGCCGTCTCAGTATCATACCCCAGGATCCTACCTTATTCGAAGGAACTATTAGGGGGAATCTTGATCCCCTTCAAGAGCATTCGGATCATGAAGTTTGGCAGGCACTTGACAAATCTCAGCTTGGAGATGTAATCCGTAAAACAGAGCACAAGCTTGATTCACCAGTGCTAGAAAATGGGGATAATTGGAGCGTGGGGCAGCGACAACTTGTTTCTCTGGGTCGGGCATTGCTTAAGCAGGCCAAAATACTGGTGCTTGATGAAGCAACAGCATCAGTTGATACGCAGACAGACAATCTCATCCAGAAAATTATTCGAACAGAGTTTAAGAACTGTACTGTGTGCACTATAGCGCATCGTATACCAACCGTCATTGACAGTGATCTAGTATTGGTTCTGAGTGATGGTCGAGTGGCAGAGTTTGATACTCCTCAACGGCTATTAGAAGATAAATCGTCCATGTTTCTAAAATTGGTAACTGAGTATTCATCAAGGTCAACTGGTATACCGGATTTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000325 GO:0001101 GO:0003674 GO:0003824 GO:0004888 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0006810 GO:0006873 GO:0006875 GO:0006950 GO:0006970 GO:0007154 GO:0007165 GO:0008150 GO:0008281 GO:0009628 GO:0009651 GO:0009719 GO:0009725 GO:0009737 GO:0009738 GO:0009755 GO:0009987 GO:0010033 GO:0010118 GO:0015399 GO:0015405 GO:0016020 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0019725 GO:0022804 GO:0022857 GO:0023052 GO:0030003 GO:0030004 GO:0030007 GO:0031090 GO:0032870 GO:0033993 GO:0038023 GO:0042221 GO:0042592 GO:0042623 GO:0042626 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043492 GO:0044422 GO:0044424 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0048878 GO:0050789 GO:0050794 GO:0050801 GO:0050896 GO:0051179 GO:0051234 GO:0051716 GO:0055065 GO:0055067 GO:0055075 GO:0055080 GO:0055082 GO:0055085 GO:0060089 GO:0065007 GO:0065008 GO:0070887 GO:0071215 GO:0071229 GO:0071310 GO:0071396 GO:0071495 GO:0097305 GO:0097306 GO:0098588 GO:0098771 GO:0098805 GO:1901527 GO:1901700 GO:1901701

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

ABC_membrane ABC_tran

Protein Analysis

1541

Amino Acids

170.69

Weight (kDa)

8.58

Isoelectric Point (pI)

39.39

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ABC_membrane	PF00664	339 - 604	1.7e-29	ABC transporter transmembrane region
ABC_tran	PF00005	668 - 802	2e-18	ABC transporter
ABC_membrane	PF00664	978 - 1220	1.8e-29	ABC transporter transmembrane region
ABC_tran	PF00005	1312 - 1460	1.3e-27	ABC transporter

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007932)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G04120 AT1G04120 AT1G04120
fragaria_vesca	FvH4_2g20350 FvH4_2g20350 FvH4_2g20350
malus_domestica	MD05G1187600.v1.1 MD10G1175300.v1.1
prunus_persica	Prupe.8G214600_v2.0.a1 Prupe.8G214600_v2.0.a1 Prupe.8G214600_v2.0.a1
pyrus_communis	pycom05g17240 pycom10g15100
rosa_chinensis	RchiOBHm_Chr6g0286471
rosa_laevigata	RLG00000012569
rosa_multiflora	Rmu_sc0034370.1_g000001
rosa_roxburghii	Rroxscaffold_7G00182310
rosa_rugosa	Rorug06G0179900 Rorug06G0180000
rosa_samantha	Rh6AG292200 Rh6BG295800 Rh6CG296500 Rh6DG288300
rosa_wichuraiana	Rw6G025200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	906
AarI	CACCTGC	2 cut(s)	1751, 4037
Acc36I	ACCTGC	2 cut(s)	1751, 4037
AccB7I	CCANNNNNTGG	2 cut(s)	3875, 4049
AccI	GTMKAC	3 cut(s)	1239, 4468, 4612
AccII	CGCG	1 cut(s)	3177
AclI	AACGTT	1 cut(s)	2000
AcoI	YGGCCR	6 cut(s)	501, 1518, 2332, 3489, 3866, 3985
AcsI	RAATTY	7 cut(s)	305, 916, 1569, 1816, 2320, 2504, 3721
AcuI	CTGAAG	4 cut(s)	963, 2389, 2766, 3173
AfaI	GTAC	9 cut(s)	594, 1729, 1747, 2140, 2231, 2844, 3806, 3991, 4444
AflII	CTTAAG	3 cut(s)	758, 1574, 4340
AflIII	ACRYGT	1 cut(s)	2344
AhlI	ACTAGT	1 cut(s)	2608
AjiI	CACGTC	1 cut(s)	1944
AjuI	GAANNNNNNNTTGG	4 cut(s)	206, 238, 2252, 2284
AleI	CACNNNNGTG	1 cut(s)	1287
AloI	GAACNNNNNNTCC	4 cut(s)	3506, 3538, 3667, 3699
Alw21I	GWGCWC	5 cut(s)	566, 1697, 3083, 4257, 4454
Alw26I	GTCTC	8 cut(s)	11, 547, 838, 1094, 1154, 1757, 2617, 4118
Alw44I	GTGCAC	2 cut(s)	562, 4450
AlwNI	CAGNNNCTG	1 cut(s)	2594
ApaLI	GTGCAC	2 cut(s)	562, 4450
ApoI	RAATTY	7 cut(s)	305, 916, 1569, 1816, 2320, 2504, 3721
ArsI	GACNNNNNNTTYG	2 cut(s)	64, 96
Asp700I	GAANNNNTTC	3 cut(s)	1423, 2196, 3921
AspLEI	GCGC	4 cut(s)	142, 2550, 3179, 4462
AspS9I	GGNCC	9 cut(s)	172, 196, 652, 1055, 1134, 1978, 2771, 3043, 3064
AsuC2I	CCSGG	2 cut(s)	175, 1174
AsuHPI	GGTGA	5 cut(s)	2132, 2318, 2612, 3482, 4260
AsuII	TTCGAA	3 cut(s)	230, 4146, 4423
AvaII	GGWCC	5 cut(s)	1055, 1134, 1978, 2771, 3043
BaeGI	GKGCMC	4 cut(s)	296, 566, 2365, 4454
BaeI	ACNNNNGTAYC	2 cut(s)	1719, 1752
BalI	TGGCCA	2 cut(s)	2334, 3868
BamHI	GGATCC	3 cut(s)	1794, 4056, 4132
BanII	GRGCYC	2 cut(s)	1697, 3083
BarI	GAAGNNNNNNTAC	2 cut(s)	591, 623
BbsI	GAAGAC	4 cut(s)	111, 1547, 2475, 4085
Bbv12I	GWGCWC	5 cut(s)	566, 1697, 3083, 4257, 4454
BceAI	ACGGC	5 cut(s)	1245, 1533, 3972, 4095, 4559
BciVI	GTATCC	2 cut(s)	2163, 3741
BclI	TGATCA	3 cut(s)	1065, 2674, 3238
BcnI	CCSGG	2 cut(s)	175, 1174
BcoDI	GTCTC	8 cut(s)	11, 547, 838, 1094, 1154, 1757, 2617, 4118
BcuI	ACTAGT	1 cut(s)	2608
BfaI	CTAG	9 cut(s)	143, 656, 1154, 2609, 2976, 3128, 3861, 4277, 4493
BfmI	CTRYAG	4 cut(s)	1758, 2904, 3574, 4455
BfoI	RGCGCY	1 cut(s)	143
BfrI	CTTAAG	3 cut(s)	758, 1574, 4340
BfuAI	ACCTGC	2 cut(s)	1751, 4037
BfuI	GTATCC	2 cut(s)	2163, 3741
BlpI	GCTNAGC	3 cut(s)	60, 451, 1267
Bme18I	GGWCC	5 cut(s)	1055, 1134, 1978, 2771, 3043
BmgBI	CACGTC	1 cut(s)	1944
BmgT120I	GGNCC	9 cut(s)	172, 196, 652, 1055, 1134, 1978, 2771, 3043, 3064
BmiI	GGNNCC	9 cut(s)	239, 1056, 1135, 1796, 1979, 1980, 3676, 4058, 4134
BmrI	ACTGGG	1 cut(s)	3827
BmuI	ACTGGG	1 cut(s)	3827
BoxI	GACNNNNGTC	2 cut(s)	2609, 3849
BpiI	GAAGAC	4 cut(s)	111, 1547, 2475, 4085
BpmI	CTGGAG	2 cut(s)	131, 1711
Bpu10I	CCTNAGC	1 cut(s)	3161
Bpu1102I	GCTNAGC	3 cut(s)	60, 451, 1267
Bpu14I	TTCGAA	3 cut(s)	230, 4146, 4423
BpuEI	CTTGAG	3 cut(s)	872, 968, 3788
BpuMI	CCSGG	2 cut(s)	175, 1174
Bsa29I	ATCGAT	1 cut(s)	889
BsaAI	YACGTR	1 cut(s)	1051
BsaI	GGTCTC	3 cut(s)	11, 838, 1154
BsaJI	CCNNGG	5 cut(s)	972, 1521, 1925, 2095, 4128
BsaWI	WCCGGW	2 cut(s)	2117, 4615
BsaXI	ACNNNNNCTCC	8 cut(s)	378, 408, 1284, 1314, 1625, 1655, 1880, 1910
Bse118I	RCCGGY	2 cut(s)	649, 1025
Bse1I	ACTGG	7 cut(s)	697, 2431, 3833, 3997, 4271, 4362, 4612
Bse3DI	GCAATG	4 cut(s)	515, 731, 1239, 4334
BseCI	ATCGAT	1 cut(s)	889
BseDI	CCNNGG	5 cut(s)	972, 1521, 1925, 2095, 4128
BseMI	GCAATG	4 cut(s)	515, 731, 1239, 4334
BseNI	ACTGG	7 cut(s)	697, 2431, 3833, 3997, 4271, 4362, 4612
BseRI	GAGGAG	4 cut(s)	399, 402, 1631, 4527
BseSI	GKGCMC	4 cut(s)	296, 566, 2365, 4454
BseX3I	CGGCCG	1 cut(s)	501
BseYI	CCCAGC	4 cut(s)	55, 782, 1130, 1974
BsgI	GTGCAG	5 cut(s)	426, 1343, 2369, 2430, 3120
Bsh1236I	CGCG	1 cut(s)	3177
Bsh1285I	CGRYCG	1 cut(s)	504
BshVI	ATCGAT	1 cut(s)	889
BsiEI	CGRYCG	1 cut(s)	504
BsiHKAI	GWGCWC	5 cut(s)	566, 1697, 3083, 4257, 4454
BsiSI	CCGG	7 cut(s)	175, 199, 650, 1026, 1174, 2118, 4616
BslFI	GGGAC	4 cut(s)	1147, 1263, 1349, 1991
BsmAI	GTCTC	8 cut(s)	11, 547, 838, 1094, 1154, 1757, 2617, 4118
BsmBI	CGTCTC	2 cut(s)	1757, 4118
BsmFI	GGGAC	4 cut(s)	1147, 1263, 1349, 1991
BsmI	GAATGC	2 cut(s)	3438, 4186
Bso31I	GGTCTC	3 cut(s)	11, 838, 1154
Bsp119I	TTCGAA	3 cut(s)	230, 4146, 4423
Bsp1286I	GDGCHC	7 cut(s)	296, 566, 1697, 2365, 3083, 4257, 4454
Bsp1407I	TGTACA	2 cut(s)	592, 2842
Bsp1720I	GCTNAGC	3 cut(s)	60, 451, 1267
BspDI	ATCGAT	1 cut(s)	889
BspFNI	CGCG	1 cut(s)	3177
BspHI	TCATGA	3 cut(s)	3525, 4096, 4195
BspLI	GGNNCC	9 cut(s)	239, 1056, 1135, 1796, 1979, 1980, 3676, 4058, 4134
BspMAI	CTGCAG	3 cut(s)	1762, 2908, 3578
BspMI	ACCTGC	2 cut(s)	1751, 4037
BspT104I	TTCGAA	3 cut(s)	230, 4146, 4423
BspTI	CTTAAG	3 cut(s)	758, 1574, 4340
BspTNI	GGTCTC	3 cut(s)	11, 838, 1154
BsrDI	GCAATG	4 cut(s)	515, 731, 1239, 4334
BsrFI	RCCGGY	2 cut(s)	649, 1025
BsrGI	TGTACA	2 cut(s)	592, 2842
BsrI	ACTGG	7 cut(s)	697, 2431, 3833, 3997, 4271, 4362, 4612
BssAI	RCCGGY	2 cut(s)	649, 1025
BssECI	CCNNGG	5 cut(s)	972, 1521, 1925, 2095, 4128
BssNAI	GTATAC	3 cut(s)	1240, 4469, 4613
BssT1I	CCWWGG	2 cut(s)	1521, 2095
Bst1107I	GTATAC	3 cut(s)	1240, 4469, 4613
Bst6I	CTCTTC	6 cut(s)	164, 828, 876, 1887, 2844, 2863
BstAFI	CTTAAG	3 cut(s)	758, 1574, 4340
BstAPI	GCANNNNNTGC	4 cut(s)	100, 2347, 2417, 3349
BstAUI	TGTACA	2 cut(s)	592, 2842
BstBAI	YACGTR	1 cut(s)	1051
BstBI	TTCGAA	3 cut(s)	230, 4146, 4423
BstDSI	CCRYGG	1 cut(s)	1925
BstFNI	CGCG	1 cut(s)	3177
BstH2I	RGCGCY	1 cut(s)	143
BstHHI	GCGC	4 cut(s)	142, 2550, 3179, 4462
BstMAI	GTCTC	8 cut(s)	11, 547, 838, 1094, 1154, 1757, 2617, 4118
BstMCI	CGRYCG	1 cut(s)	504
BstNSI	RCATGY	2 cut(s)	1214, 3649
BstPAI	GACNNNNGTC	2 cut(s)	2609, 3849
BstSFI	CTRYAG	4 cut(s)	1758, 2904, 3574, 4455
BstSLI	GKGCMC	4 cut(s)	296, 566, 2365, 4454
BstUI	CGCG	1 cut(s)	3177
BstV2I	GAAGAC	4 cut(s)	111, 1547, 2475, 4085
BstX2I	RGATCY	7 cut(s)	946, 1794, 2103, 3216, 3253, 4056, 4132
BstXI	CCANNNNNNTGG	2 cut(s)	3864, 4357
BstYI	RGATCY	7 cut(s)	946, 1794, 2103, 3216, 3253, 4056, 4132
BstZ17I	GTATAC	3 cut(s)	1240, 4469, 4613
BstZI	CGGCCG	1 cut(s)	501
Bsu15I	ATCGAT	1 cut(s)	889
BsuI	GTATCC	2 cut(s)	2163, 3741
BsuTUI	ATCGAT	1 cut(s)	889
BtgI	CCRYGG	1 cut(s)	1925
BtrI	CACGTC	1 cut(s)	1944
BtsI	GCAGTG	3 cut(s)	1184, 1755, 2743
BtsIMutI	CAGTG	9 cut(s)	318, 1184, 1755, 2255, 2413, 2424, 2743, 4278, 4492
BveI	ACCTGC	2 cut(s)	1751, 4037
CaiI	CAGNNNCTG	1 cut(s)	2594
CciI	TCATGA	3 cut(s)	3525, 4096, 4195
CfoI	GCGC	4 cut(s)	142, 2550, 3179, 4462
Cfr10I	RCCGGY	2 cut(s)	649, 1025
Cfr13I	GGNCC	9 cut(s)	172, 196, 652, 1055, 1134, 1978, 2771, 3043, 3064
ClaI	ATCGAT	1 cut(s)	889
CsiI	ACCWGGT	1 cut(s)	1827
Csp6I	GTAC	9 cut(s)	593, 1728, 1746, 2139, 2230, 2843, 3805, 3990, 4443
CviQI	GTAC	9 cut(s)	593, 1728, 1746, 2139, 2230, 2843, 3805, 3990, 4443
DraI	TTTAAA	3 cut(s)	304, 3726, 3900
EaeI	YGGCCR	6 cut(s)	501, 1518, 2332, 3489, 3866, 3985
EagI	CGGCCG	1 cut(s)	501
Eam1104I	CTCTTC	6 cut(s)	164, 828, 876, 1887, 2844, 2863
EarI	CTCTTC	6 cut(s)	164, 828, 876, 1887, 2844, 2863
EciI	GGCGGA	2 cut(s)	193, 3978
Ecl136II	GAGCTC	2 cut(s)	1695, 3081
EclXI	CGGCCG	1 cut(s)	501
Eco130I	CCWWGG	2 cut(s)	1521, 2095
Eco147I	AGGCCT	1 cut(s)	4022
Eco24I	GRGCYC	2 cut(s)	1697, 3083
Eco31I	GGTCTC	3 cut(s)	11, 838, 1154
Eco47I	GGWCC	5 cut(s)	1055, 1134, 1978, 2771, 3043
Eco52I	CGGCCG	1 cut(s)	501
Eco53kI	GAGCTC	2 cut(s)	1695, 3081
Eco57I	CTGAAG	4 cut(s)	963, 2389, 2766, 3173
EcoICRI	GAGCTC	2 cut(s)	1695, 3081
EcoO109I	RGGNCCY	2 cut(s)	1134, 1978
EcoRI	GAATTC	2 cut(s)	916, 1569
EcoT14I	CCWWGG	2 cut(s)	1521, 2095
EcoT22I	ATGCAT	1 cut(s)	1212
EcoT38I	GRGCYC	2 cut(s)	1697, 3083
ErhI	CCWWGG	2 cut(s)	1521, 2095
Esp3I	CGTCTC	2 cut(s)	1757, 4118
FalI	AAGNNNNNCTT	6 cut(s)	1845, 1877, 2873, 2905, 3336, 3368
FaqI	GGGAC	4 cut(s)	1147, 1263, 1349, 1991
FauI	CCCGC	3 cut(s)	2814, 3272, 3688
FauNDI	CATATG	2 cut(s)	1361, 3712
FbaI	TGATCA	3 cut(s)	1065, 2674, 3238
FblI	GTMKAC	3 cut(s)	1239, 4468, 4612
FriOI	GRGCYC	2 cut(s)	1697, 3083
FspBI	CTAG	9 cut(s)	143, 656, 1154, 2609, 2976, 3128, 3861, 4277, 4493
GlaI	GCGC	4 cut(s)	141, 2549, 3178, 4461
GsaI	CCCAGC	4 cut(s)	59, 786, 1134, 1978
GsuI	CTGGAG	2 cut(s)	131, 1711
HaeII	RGCGCY	1 cut(s)	143
HapII	CCGG	7 cut(s)	175, 199, 650, 1026, 1174, 2118, 4616
HhaI	GCGC	4 cut(s)	142, 2550, 3179, 4462
Hin6I	GCGC	4 cut(s)	140, 2548, 3177, 4460
HinP1I	GCGC	4 cut(s)	140, 2548, 3177, 4460
HincII	GTYRAC	2 cut(s)	1303, 4605
HindII	GTYRAC	2 cut(s)	1303, 4605
HindIII	AAGCTT	4 cut(s)	1584, 1668, 3764, 4259
HpaI	GTTAAC	1 cut(s)	1303
HpaII	CCGG	7 cut(s)	175, 199, 650, 1026, 1174, 2118, 4616
HphI	GGTGA	5 cut(s)	2132, 2318, 2612, 3482, 4260
HpyCH4IV	ACGT	4 cut(s)	1050, 1943, 2000, 2344
HpySE526I	ACGT	4 cut(s)	1050, 1943, 2000, 2344
HspAI	GCGC	4 cut(s)	140, 2548, 3177, 4460
KflI	GGGWCCC	1 cut(s)	1978
Ksp22I	TGATCA	3 cut(s)	1065, 2674, 3238
KspAI	GTTAAC	1 cut(s)	1303
LmnI	GCTCC	6 cut(s)	86, 112, 1692, 3078, 3832, 4296
MabI	ACCWGGT	1 cut(s)	1827
MaeI	CTAG	9 cut(s)	143, 656, 1154, 2609, 2976, 3128, 3861, 4277, 4493
MaeII	ACGT	4 cut(s)	1050, 1943, 2000, 2344
MfeI	CAATTG	6 cut(s)	1914, 2631, 3234, 3372, 3477, 3882
MflI	RGATCY	7 cut(s)	946, 1794, 2103, 3216, 3253, 4056, 4132
MhlI	GDGCHC	7 cut(s)	296, 566, 1697, 2365, 3083, 4257, 4454
MlsI	TGGCCA	2 cut(s)	2334, 3868
MluNI	TGGCCA	2 cut(s)	2334, 3868
MlyI	GAGTC	5 cut(s)	1245, 2663, 2880, 3482, 3839
MmeI	TCCRAC	4 cut(s)	655, 1396, 2683, 3881
Mox20I	TGGCCA	2 cut(s)	2334, 3868
Mph1103I	ATGCAT	1 cut(s)	1212
MroXI	GAANNNNTTC	3 cut(s)	1423, 2196, 3921
MscI	TGGCCA	2 cut(s)	2334, 3868
MslI	CAYNNNNRTG	6 cut(s)	255, 621, 1287, 1364, 1682, 2625
Msp20I	TGGCCA	2 cut(s)	2334, 3868
MspA1I	CMGCKG	2 cut(s)	440, 1715
MspCI	CTTAAG	3 cut(s)	758, 1574, 4340
MspI	CCGG	7 cut(s)	175, 199, 650, 1026, 1174, 2118, 4616
MunI	CAATTG	6 cut(s)	1914, 2631, 3234, 3372, 3477, 3882
Mva1269I	GAATGC	2 cut(s)	3438, 4186
MvnI	CGCG	1 cut(s)	3177
NciI	CCSGG	2 cut(s)	175, 1174
NdeI	CATATG	2 cut(s)	1361, 3712
NlaIV	GGNNCC	9 cut(s)	239, 1056, 1135, 1796, 1979, 1980, 3676, 4058, 4134
NmeAIII	GCCGAG	1 cut(s)	529
NmuCI	GTSAC	5 cut(s)	643, 688, 1280, 1717, 2488
NsiI	ATGCAT	1 cut(s)	1212
NspI	RCATGY	2 cut(s)	1214, 3649
NspV	TTCGAA	3 cut(s)	230, 4146, 4423
OliI	CACNNNNGTG	1 cut(s)	1287
PaeI	GCATGC	1 cut(s)	3649
PagI	TCATGA	3 cut(s)	3525, 4096, 4195
PaqCI	CACCTGC	2 cut(s)	1751, 4037
PceI	AGGCCT	1 cut(s)	4022
PctI	GAATGC	2 cut(s)	3438, 4186
PdmI	GAANNNNTTC	3 cut(s)	1423, 2196, 3921
PfeI	GAWTC	9 cut(s)	273, 1878, 2926, 3001, 3197, 3223, 3535, 4165, 4265
PflMI	CCANNNNNTGG	2 cut(s)	3875, 4049
PfoI	TCCNGGA	2 cut(s)	108, 276
PleI	GAGTC	5 cut(s)	1245, 2663, 2879, 3481, 3839
PpsI	GAGTC	5 cut(s)	1245, 2663, 2879, 3481, 3839
Ppu21I	YACGTR	1 cut(s)	1051
PpuMI	RGGWCCY	2 cut(s)	1134, 1978
PshAI	GACNNNNGTC	2 cut(s)	2609, 3849
PsiI	TTATAA	1 cut(s)	906
Psp124BI	GAGCTC	2 cut(s)	1697, 3083
Psp1406I	AACGTT	1 cut(s)	2000
Psp5II	RGGWCCY	2 cut(s)	1134, 1978
PspFI	CCCAGC	4 cut(s)	55, 782, 1130, 1974
PspN4I	GGNNCC	9 cut(s)	239, 1056, 1135, 1796, 1979, 1980, 3676, 4058, 4134
PspPI	GGNCC	9 cut(s)	172, 196, 652, 1055, 1134, 1978, 2771, 3043, 3064
PspPPI	RGGWCCY	2 cut(s)	1134, 1978
PstI	CTGCAG	3 cut(s)	1762, 2908, 3578
PstNI	CAGNNNCTG	1 cut(s)	2594
PsuI	RGATCY	7 cut(s)	946, 1794, 2103, 3216, 3253, 4056, 4132
PvuII	CAGCTG	2 cut(s)	440, 1715
RsaI	GTAC	9 cut(s)	594, 1729, 1747, 2140, 2231, 2844, 3806, 3991, 4444
RsaNI	GTAC	9 cut(s)	593, 1728, 1746, 2139, 2230, 2843, 3805, 3990, 4443
RseI	CAYNNNNRTG	6 cut(s)	255, 621, 1287, 1364, 1682, 2625
SacI	GAGCTC	2 cut(s)	1697, 3083
Sau96I	GGNCC	9 cut(s)	172, 196, 652, 1055, 1134, 1978, 2771, 3043, 3064
SchI	GAGTC	5 cut(s)	1245, 2663, 2880, 3482, 3839
SduI	GDGCHC	7 cut(s)	296, 566, 1697, 2365, 3083, 4257, 4454
SexAI	ACCWGGT	1 cut(s)	1827
SfcI	CTRYAG	4 cut(s)	1758, 2904, 3574, 4455
SfuI	TTCGAA	3 cut(s)	230, 4146, 4423
SinI	GGWCC	5 cut(s)	1055, 1134, 1978, 2771, 3043
SmiI	ATTTAAAT	1 cut(s)	3726
SmiMI	CAYNNNNRTG	6 cut(s)	255, 621, 1287, 1364, 1682, 2625
SmlI	CTYRAG	6 cut(s)	758, 851, 983, 1574, 3767, 4340
SmoI	CTYRAG	6 cut(s)	758, 851, 983, 1574, 3767, 4340
SpeI	ACTAGT	1 cut(s)	2608
SphI	GCATGC	1 cut(s)	3649
SseBI	AGGCCT	1 cut(s)	4022
SspI	AATATT	2 cut(s)	2197, 2955
SspMI	CTAG	9 cut(s)	143, 656, 1154, 2609, 2976, 3128, 3861, 4277, 4493
SstI	GAGCTC	2 cut(s)	1697, 3083
StuI	AGGCCT	1 cut(s)	4022
StyI	CCWWGG	2 cut(s)	1521, 2095
SwaI	ATTTAAAT	1 cut(s)	3726
TaiI	ACGT	4 cut(s)	1053, 1946, 2003, 2347
TaqI	TCGA	8 cut(s)	230, 605, 889, 2502, 3623, 4146, 4423, 4516
TaqII	GACCGA	1 cut(s)	4079
TatI	WGTACW	5 cut(s)	592, 2229, 2842, 3804, 4442
TauI	GCSGC	2 cut(s)	503, 3491
TfiI	GAWTC	9 cut(s)	273, 1878, 2926, 3001, 3197, 3223, 3535, 4165, 4265
TscAI	CASTG	9 cut(s)	318, 1184, 1762, 2262, 2413, 2431, 2743, 4278, 4492
TseFI	GTSAC	5 cut(s)	643, 688, 1280, 1717, 2488
Tsp45I	GTSAC	5 cut(s)	643, 688, 1280, 1717, 2488
TspGWI	ACGGA	4 cut(s)	1047, 3229, 3622, 4232
TspRI	CASTG	9 cut(s)	318, 1184, 1762, 2262, 2413, 2431, 2743, 4278, 4492
Van91I	CCANNNNNTGG	2 cut(s)	3875, 4049
Vha464I	CTTAAG	3 cut(s)	758, 1574, 4340
VneI	GTGCAC	2 cut(s)	562, 4450
VpaK11BI	GGWCC	5 cut(s)	1055, 1134, 1978, 2771, 3043
XapI	RAATTY	7 cut(s)	305, 916, 1569, 1816, 2320, 2504, 3721
XbaI	TCTAGA	1 cut(s)	3127
XceI	RCATGY	2 cut(s)	1214, 3649
XmiI	GTMKAC	3 cut(s)	1239, 4468, 4612
XmnI	GAANNNNTTC	3 cut(s)	1423, 2196, 3921
XspI	CTAG	9 cut(s)	143, 656, 1154, 2609, 2976, 3128, 3861, 4277, 4493
Zsp2I	ATGCAT	1 cut(s)	1212

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.