Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6B

Orthogroup ID

OG0007932

Physical Location & Seq

Genomic Coordinates Forward (+)

52470024 .. 52478907

Gene Structure 8884 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6BG295800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 4659 bp

ATGGGTCTCACTCTCTTGCTTCACAAAATCTCAGCTTCTTCTTCATCTTCAAACCCAGCTCAGCTATCCCAGACGACCCCTTTGGGAGCTGTGCAAGGTCTGCCCTTCCTGGAGCTGTCTTCTATTGTCATCAATTTGGCGCTAGTTCTTGCGTTTCTCTTCATCGTTTCGGCCCGGCGGATGGTTGTCTGTCTGGGCCGGATTAGGGTGCTGAAAGACGATTTGGGTTCGAATGGGAACCCAATTCAGCATGATAGTGCTGTTGATAGGGGAATCCAGGAGGTTAGAGTGGGCACAGACTTTAAATTTTCAGTGTTTTGCTGCTTCTATGTGTTGTTTGTGCAAGTTGTGGTGTTGGGTTTTGATGGGGTTGGTTTGGTTAGAGGAGGAGGAGGAGGTGGTGGTAGTGGGAGGGTGGTGGTTTGGTCTGTGCTTTGCTTACCAGCTGCACAGGGCTTAGCTTGGTTTGTGATGAGCTTCTCGGCTTTGCATTGTAAGTTCAAGGCGGCTGAGAAGTTCCCATTGCTGTTGAGGGGTTGGTGGGCTGTGTCCTTTGTGCTTTGCTTGTGCACTTTGTATGTTGATGGGAGAGGTTTTGTACAAGAAGGCTCGATACACCTTCATTCTCATGTTGTGGCTAATTTCGCAGTCACACCGGCCCTAGCATTTCTCTGTTTCGTTGCAATTAGGGGTGTGACTGGTGTGATTGTTTGTAGAAACTCTCAGCTTCAAGAGCCATTGCTCGAAGAAGAAGCAGGGTGTCTTAAGGTTACCCCTTATAGTGATGCTGGGATTTTCAGCTTGGCAACACTATCTTGGATAAACCCTCTTCTTTCAATAGGGGCAAAGAGACCGCTTGAGATCAAGGATATTCCTCTTCTTGCACCACAAGATCGATCCAAGACCAATTATAAGGTCTTGAATTCAAATTGGGAGAAATTGAAGGCTGAAGATCCTTCAAAGCAGCCTTCTTTAGCCTGGGCAATTCTCAAGTCATTTTGGAAGGAGGCAGCTTGTAATGCCATTTTCGCCGGCTTGAACACTCTTGTTTCATATGTGGGTCCGTATATGATCAGCTATTTCGTTGATTACTTGGGGGGAATAGAGACTTTCCCCCATGAAGGGTATATCCTTGCTGGGACCTTCTTTGCAGCGAAGCTAGTTGAGACCTTAACAACCCGGCAGTGGTATCTTGGGGTGGACATTTTGGGTATGCATGTAAGATCAGCTCTAACGGCAATGGTATACCGAAAGGGACTCAGGCTTTCCAGCTCAGCCAAGCAAAGTCACACTAGTGGAGAGATTGTTAACTACATGGCTGTTGATGTGCAGAGGGTAGGTGACTATTCCTGGTATCTCCATGACATATGGATGCTTCCTCTACAAATTGTTCTTGCCCTTGCAATTTTATACAAGAATGTTGGAATTGCTTCTGTTGCTACATTGATTGCCACCATTATCTCCATTGTTCTTACTGTTCCTTTGGCAAAGATACAAGAAGATTATCAAGACAAGTTGATGACGGCCAAGGATGAAAGAATGAGGAAGACTTCTGAGTGCCTACGGAACATGAGAATTCTTAAGTTGCAAGCTTGGGAGGACAGATACCGACTGATGTTAGAGGAGATGCGTAGTGTGGAGTTTAAGTATCTACGCAAAGCCCTCTACTCGCAAGCTTTTATCACATTCATGTTCTGGAGCTCTCCTATATTTGTTTCAGCTGTCACTTTCGGTACTTCTGTATTTTTGGGTACTCGTCTCACTGCAGGTGGTGTTCTTTCTGCTCTCGCCACTTTCAGGATCCTCCAAGAACCACTCAGGAATTTCCCTGACCTGGTATCAATGATGGCTCAGACAAAAGTTTCCCTTGATCGTATTTCTGGATTCTTGCAGGAGGAAGAGTTACAGGCAGATGCAACAATTGTCCTGCCACGGGGCATCACAAGCACGTCAATAGAAATTAAAGATGGCGTGTTTAGCTGGGACCCTTCCTCTGTAAGACCAACGTTATCGGGAATACAAATGAAAGTGGAAAGAGGGATGCGTGTTGCTGTATGTGGAATGGTTGGTTCTGGAAAATCAAGTTTTCTCTCTTGCATCCTTGGGGAGATCCCGAAAGTCTCCGGTGAAGTAAAGTTATGTGGTACTGCTGCTTATGTTTCTCAGTCAGCATGGATACAGTCTGGTAATATAGAAGAAAATATTCTTTTTGGCAGCCCAATGGAGAAACCAAAGTACAAGAAGGTTATCCATGCTTGTTCACTGAAAAAGGATTTGGAACTTTTCTCACATGGAGATCAAACCATAATTGGTGATAGGGGTATAAATTTGAGTGGCGGCCAGAAGCAACGTGTGCAGCTTGCAAGGGCACTCTATCAGGACGCTGACATTTATTTACTTGACGACCCCTTCAGTGCAGTTGATGCACACACTGGATCAGAGTTGTTTAAGGAATACATATTGACAGCATTAGAAGACAAAACTGTTGTTTTCGTGACCCATCAAGTCGAATTTCTGCCTTCTGCTGATTTAATCCTGGTTCTTAAAGAGGGGCACATCATACAAGCAGGAAAATATGATGATCTTTTACAGGCAGGAACTGATTTTAAGACACTAGTCTCAGCTCACCATGATGCAATTGAAGCTATGGATATTCCCAATTATTCATCAGGCGACTCTGATCACAACTTGTGTCCAGTTGGACTTGGCAAAAATCCTGATTTACCAAGCAGCAGTGTTGATTGTTTGGCAAAGGAAGTGCAAGAAGGTCCATCAGCTTCAGAGCAGAAAGCAATTAAAGAGAAAAAGAAGGCAAAGCGGGCAAGAAAGAAGCAGCTTGTACAAGAAGAGGAAAGGGTAAGAGGAAGAGTCAGCATGAAGGTTTACTTGTCATATATGGCTGCAGCATATAAAGGATCACTGATTCCACTCATAATTATTGCACAAGCAATATTTCAATTCCTTCAAATTGCTAGTAGTTGGTGGATGGCTTGGGCGAATCCCCAAACACAGGGAGATCAGCCTAAAGTGAGTGCTATGGTCCTTCTTGGTGTTTACATGGCCCTTGCATTTGGGAGCTCTTGGTTTATATTTATTAGGGCTGTGTTGGTAGCTACCTTTGGTCTAGAAGCTGCACAGAAATTGTTTCTGAAGATGCTTAGGAGTGTTTTCCGCGCACCAATGTCTTTCTTTGATTCTACTCCTGCTGGACGGATCTTGAATCGTGTATCAATTGATCAAAGTGTGGTGGATCTTGATATTCCTTTTAGACTTGGTGGGTTCGCTTCAACGACAATACAGCTTATAGGCATTGTTGGTGTGATGACAAAAGTTACCTGGCAAGTTTTGCTTCTTGTTGTTCCTATGGCAATTGCTTGTTTGTGGATGCAGAAATACTACATGGCTTCATCAAGGGAATTAGTCCGAATTGTTAGCATTCAGAAATCTCCAATTATCCATCTTTTCGGCGAGTCAATTGCAGGGGCGGCCACAATAAGAGGATTTGGACAGGAAAAAAGGTTCATGAAAAGGAATCTTTATTTCCTTGATTGTTTTGCTCGCCCATTCTTCTGCAGTATTGCTGCTATTGAATGGCTCTGCCTACGGATGGAATTACTCTCGACTTTTGTATTTGCTTTCTGCATGCTTTTACTTGTGAGCTTTCCACATGGAACCATTGATCCAAGCATGGCGGGTCTTGCTGTAACATATGGCTTGAATTTAAATGCACGGTTATCACGATGGATACTTAGCTTTTGCAAGCTTGAGAACAAAATTATTTCCATAGAAAGGATTTATCAGTACAGTCAAATCCCAAGTGAAGCTCCCCCAGTTATTGAGGACTCTCGTCCTCCAACTAGATGGCCAGAGAATGGAACAATTGAACTACATGATTTAAAGGTTCGTTACAAGGAAAATCTTCCTGTAGTGCTTCATGGGGTAACTTGCACTTTTCCTGGCGGAAAGAAGATTGGAATTGTTGGCCGTACTGGAAGTGGCAAATCCACTTTGATCCAGGCCTTATTTAGACTGATTGAACCAGCAGGTGGGAGGATCCTTATAGACAAAATAGATATTTCAATGCTCGGTCTTCATGATCTTCGTAGCCGTCTCAGTATCATACCCCAGGATCCTACCTTATTCGAAGGAACTATTAGGGGGAATCTTGATCCCCTTCAAGAGCATTCGGATCATGAAGTTTGGCAGGCACTTGACAAATCTCAGCTTGGAGATGTAATCCGTAAAACAGAGCACAAGCTTGATTCACCAGTGCTAGAAAATGGGGATAATTGGAGCGTGGGGCAGCGACAACTTGTTTCTCTGGGTCGGGCATTGCTTAAGCAGGCCAAAATACTGGTGCTTGATGAAGCAACAGCATCAGTTGATACGCAGACAGACAATCTCATCCAGAAAATTATTCGAACAGAGTTTAAGAACTGTACTGTGTGCACTATAGCGCATCGTATACCAACCGTCATTGACAGTGATCTAGTATTGGTTCTGAGTGATGGTACGTACGGTTACATCTTATTGAGTTGCAGGAGACTGACTATTCATAGAAAGGAAAAAATTCTAAAGTCAATTTTAAAAAATATAGTTCAAGAAAATATCAGAATTTTTATATCCGTTTGCAAGGTATTGAATATGTTTGTGCATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000325 GO:0001101 GO:0003674 GO:0003824 GO:0004888 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0006810 GO:0006873 GO:0006875 GO:0006950 GO:0006970 GO:0007154 GO:0007165 GO:0008150 GO:0008281 GO:0009628 GO:0009651 GO:0009719 GO:0009725 GO:0009737 GO:0009738 GO:0009755 GO:0009987 GO:0010033 GO:0010118 GO:0015399 GO:0015405 GO:0016020 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0019725 GO:0022804 GO:0022857 GO:0023052 GO:0030003 GO:0030004 GO:0030007 GO:0031090 GO:0032870 GO:0033993 GO:0038023 GO:0042221 GO:0042592 GO:0042623 GO:0042626 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043492 GO:0044422 GO:0044424 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0048878 GO:0050789 GO:0050794 GO:0050801 GO:0050896 GO:0051179 GO:0051234 GO:0051716 GO:0055065 GO:0055067 GO:0055075 GO:0055080 GO:0055082 GO:0055085 GO:0060089 GO:0065007 GO:0065008 GO:0070887 GO:0071215 GO:0071229 GO:0071310 GO:0071396 GO:0071495 GO:0097305 GO:0097306 GO:0098588 GO:0098771 GO:0098805 GO:1901527 GO:1901700 GO:1901701

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

ABC_membrane ABC_tran

Protein Analysis

1552

Amino Acids

172.08

Weight (kDa)

8.87

Isoelectric Point (pI)

40.65

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ABC_membrane	PF00664	341 - 606	1.7e-29	ABC transporter transmembrane region
ABC_tran	PF00005	670 - 804	2e-18	ABC transporter
ABC_membrane	PF00664	977 - 1219	1.8e-29	ABC transporter transmembrane region
ABC_tran	PF00005	1311 - 1459	1.3e-27	ABC transporter

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

Tree File

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Orthologous Genes (Group: OG0007932)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G04120 AT1G04120 AT1G04120
fragaria_vesca	FvH4_2g20350 FvH4_2g20350 FvH4_2g20350
malus_domestica	MD05G1187600.v1.1 MD10G1175300.v1.1
prunus_persica	Prupe.8G214600_v2.0.a1 Prupe.8G214600_v2.0.a1 Prupe.8G214600_v2.0.a1
pyrus_communis	pycom05g17240 pycom10g15100
rosa_chinensis	RchiOBHm_Chr6g0286471
rosa_laevigata	RLG00000012569
rosa_multiflora	Rmu_sc0034370.1_g000001
rosa_roxburghii	Rroxscaffold_7G00182310
rosa_rugosa	Rorug06G0179900 Rorug06G0180000
rosa_samantha	Rh6AG292200 Rh6BG295800 Rh6CG296500 Rh6DG288300
rosa_wichuraiana	Rw6G025200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	912
AarI	CACCTGC	2 cut(s)	1757, 4034
Acc36I	ACCTGC	2 cut(s)	1757, 4034
AccB7I	CCANNNNNTGG	2 cut(s)	3872, 4046
AccI	GTMKAC	2 cut(s)	1245, 4465
AccII	CGCG	1 cut(s)	3174
AciI	CCGC	9 cut(s)	178, 506, 854, 2337, 2818, 3172, 3485, 3692, 3960
AclI	AACGTT	1 cut(s)	2006
AcoI	YGGCCR	5 cut(s)	1524, 2338, 3486, 3863, 3982
AcsI	RAATTY	9 cut(s)	305, 922, 1575, 1822, 2326, 2510, 3718, 4569, 4614
AcuI	CTGAAG	4 cut(s)	969, 2395, 2763, 3170
AflII	CTTAAG	3 cut(s)	764, 1580, 4337
AflIII	ACRYGT	1 cut(s)	2350
AhlI	ACTAGT	2 cut(s)	1292, 2614
AjiI	CACGTC	1 cut(s)	1950
AjuI	GAANNNNNNNTTGG	4 cut(s)	206, 238, 2258, 2290
AleI	CACNNNNGTG	1 cut(s)	1293
AloI	GAACNNNNNNTCC	4 cut(s)	3503, 3535, 3664, 3696
Alw21I	GWGCWC	5 cut(s)	572, 1703, 3080, 4254, 4451
Alw26I	GTCTC	9 cut(s)	11, 844, 1100, 1160, 1763, 2125, 2623, 4115, 4537
Alw44I	GTGCAC	2 cut(s)	568, 4447
AlwNI	CAGNNNCTG	1 cut(s)	2600
ApaLI	GTGCAC	2 cut(s)	568, 4447
ApoI	RAATTY	9 cut(s)	305, 922, 1575, 1822, 2326, 2510, 3718, 4569, 4614
ArsI	GACNNNNNNTTYG	2 cut(s)	64, 96
Asp700I	GAANNNNTTC	4 cut(s)	1429, 2202, 3918, 4569
AspLEI	GCGC	3 cut(s)	142, 3176, 4459
AspS9I	GGNCC	9 cut(s)	172, 196, 658, 1061, 1140, 1984, 2768, 3040, 3061
AsuC2I	CCSGG	2 cut(s)	175, 1180
AsuHPI	GGTGA	5 cut(s)	1352, 2138, 2324, 2618, 4257
AsuII	TTCGAA	3 cut(s)	230, 4143, 4420
AvaII	GGWCC	5 cut(s)	1061, 1140, 1984, 2768, 3040
BaeGI	GKGCMC	5 cut(s)	296, 572, 2371, 2556, 4451
BaeI	ACNNNNGTAYC	2 cut(s)	1725, 1758
BalI	TGGCCA	1 cut(s)	3865
BamHI	GGATCC	3 cut(s)	1800, 4053, 4129
BanII	GRGCYC	2 cut(s)	1703, 3080
BarI	GAAGNNNNNNTAC	2 cut(s)	597, 629
BbsI	GAAGAC	4 cut(s)	111, 1553, 2481, 4082
Bbv12I	GWGCWC	5 cut(s)	572, 1703, 3080, 4254, 4451
BceAI	ACGGC	4 cut(s)	1251, 1539, 3969, 4092
BcgI	CGANNNNNNTGC	2 cut(s)	3458, 3492
BciVI	GTATCC	2 cut(s)	2169, 3738
BclI	TGATCA	3 cut(s)	1071, 2680, 3235
BcnI	CCSGG	2 cut(s)	175, 1180
BcoDI	GTCTC	9 cut(s)	11, 844, 1100, 1160, 1763, 2125, 2623, 4115, 4537
BcuI	ACTAGT	2 cut(s)	1292, 2614
BfmI	CTRYAG	5 cut(s)	1764, 2901, 3571, 3924, 4452
BfoI	RGCGCY	1 cut(s)	143
BfrI	CTTAAG	3 cut(s)	764, 1580, 4337
BfuAI	ACCTGC	2 cut(s)	1757, 4034
BfuI	GTATCC	2 cut(s)	2169, 3738
BlpI	GCTNAGC	3 cut(s)	60, 457, 1273
Bme18I	GGWCC	5 cut(s)	1061, 1140, 1984, 2768, 3040
BmgBI	CACGTC	1 cut(s)	1950
BmgT120I	GGNCC	9 cut(s)	172, 196, 658, 1061, 1140, 1984, 2768, 3040, 3061
BmiI	GGNNCC	9 cut(s)	239, 1062, 1141, 1802, 1985, 1986, 3673, 4055, 4131
BmrI	ACTGGG	1 cut(s)	3824
BmuI	ACTGGG	1 cut(s)	3824
BoxI	GACNNNNGTC	2 cut(s)	2615, 3846
BpiI	GAAGAC	4 cut(s)	111, 1553, 2481, 4082
BpmI	CTGGAG	2 cut(s)	131, 1717
Bpu10I	CCTNAGC	1 cut(s)	3158
Bpu1102I	GCTNAGC	3 cut(s)	60, 457, 1273
Bpu14I	TTCGAA	3 cut(s)	230, 4143, 4420
BpuEI	CTTGAG	3 cut(s)	878, 974, 3785
BpuMI	CCSGG	2 cut(s)	175, 1180
Bsa29I	ATCGAT	1 cut(s)	895
BsaAI	YACGTR	1 cut(s)	4515
BsaI	GGTCTC	3 cut(s)	11, 844, 1160
BsaJI	CCNNGG	5 cut(s)	978, 1527, 1931, 2101, 4125
BsaWI	WCCGGW	1 cut(s)	2123
BsaXI	ACNNNNNCTCC	6 cut(s)	1290, 1320, 1631, 1661, 1886, 1916
Bse118I	RCCGGY	2 cut(s)	655, 1031
Bse1I	ACTGG	7 cut(s)	703, 2437, 2696, 3830, 3994, 4268, 4359
Bse3DI	GCAATG	4 cut(s)	521, 737, 1245, 4331
BseCI	ATCGAT	1 cut(s)	895
BseDI	CCNNGG	5 cut(s)	978, 1527, 1931, 2101, 4125
BseGI	GGATG	9 cut(s)	186, 1377, 1537, 2046, 2097, 2991, 3390, 3612, 4404
BseMI	GCAATG	4 cut(s)	521, 737, 1245, 4331
BseNI	ACTGG	7 cut(s)	703, 2437, 2696, 3830, 3994, 4268, 4359
BseRI	GAGGAG	5 cut(s)	399, 402, 405, 408, 1637
BseSI	GKGCMC	5 cut(s)	296, 572, 2371, 2556, 4451
BseYI	CCCAGC	4 cut(s)	55, 788, 1136, 1980
BsgI	GTGCAG	5 cut(s)	432, 1349, 2375, 2436, 3117
Bsh1236I	CGCG	1 cut(s)	3174
BshVI	ATCGAT	1 cut(s)	895
BsiHKAI	GWGCWC	5 cut(s)	572, 1703, 3080, 4254, 4451
BsiSI	CCGG	6 cut(s)	175, 199, 656, 1032, 1180, 2124
BsiWI	CGTACG	1 cut(s)	4515
BslFI	GGGAC	3 cut(s)	1153, 1269, 1997
BsmAI	GTCTC	9 cut(s)	11, 844, 1100, 1160, 1763, 2125, 2623, 4115, 4537
BsmBI	CGTCTC	2 cut(s)	1763, 4115
BsmFI	GGGAC	3 cut(s)	1153, 1269, 1997
BsmI	GAATGC	2 cut(s)	3435, 4183
Bso31I	GGTCTC	3 cut(s)	11, 844, 1160
Bsp119I	TTCGAA	3 cut(s)	230, 4143, 4420
Bsp1286I	GDGCHC	8 cut(s)	296, 572, 1703, 2371, 2556, 3080, 4254, 4451
Bsp1407I	TGTACA	2 cut(s)	598, 2839
Bsp1720I	GCTNAGC	3 cut(s)	60, 457, 1273
BspACI	CCGC	9 cut(s)	178, 506, 854, 2337, 2818, 3172, 3485, 3692, 3960
BspDI	ATCGAT	1 cut(s)	895
BspFNI	CGCG	1 cut(s)	3174
BspHI	TCATGA	3 cut(s)	3522, 4093, 4192
BspLI	GGNNCC	9 cut(s)	239, 1062, 1141, 1802, 1985, 1986, 3673, 4055, 4131
BspMAI	CTGCAG	3 cut(s)	1768, 2905, 3575
BspMI	ACCTGC	2 cut(s)	1757, 4034
BspT104I	TTCGAA	3 cut(s)	230, 4143, 4420
BspTI	CTTAAG	3 cut(s)	764, 1580, 4337
BspTNI	GGTCTC	3 cut(s)	11, 844, 1160
BsrDI	GCAATG	4 cut(s)	521, 737, 1245, 4331
BsrFI	RCCGGY	2 cut(s)	655, 1031
BsrGI	TGTACA	2 cut(s)	598, 2839
BsrI	ACTGG	7 cut(s)	703, 2437, 2696, 3830, 3994, 4268, 4359
BssAI	RCCGGY	2 cut(s)	655, 1031
BssECI	CCNNGG	5 cut(s)	978, 1527, 1931, 2101, 4125
BssNAI	GTATAC	2 cut(s)	1246, 4466
BssT1I	CCWWGG	2 cut(s)	1527, 2101
Bst1107I	GTATAC	2 cut(s)	1246, 4466
Bst6I	CTCTTC	6 cut(s)	164, 834, 882, 1893, 2841, 2860
BstAFI	CTTAAG	3 cut(s)	764, 1580, 4337
BstAPI	GCANNNNNTGC	4 cut(s)	100, 2353, 2423, 3346
BstAUI	TGTACA	2 cut(s)	598, 2839
BstBAI	YACGTR	1 cut(s)	4515
BstBI	TTCGAA	3 cut(s)	230, 4143, 4420
BstDSI	CCRYGG	1 cut(s)	1931
BstEII	GGTNACC	1 cut(s)	769
BstF5I	GGATG	9 cut(s)	186, 1377, 1537, 2046, 2097, 2991, 3390, 3612, 4404
BstFNI	CGCG	1 cut(s)	3174
BstH2I	RGCGCY	1 cut(s)	143
BstHHI	GCGC	3 cut(s)	142, 3176, 4459
BstMAI	GTCTC	9 cut(s)	11, 844, 1100, 1160, 1763, 2125, 2623, 4115, 4537
BstNSI	RCATGY	2 cut(s)	1220, 3646
BstPAI	GACNNNNGTC	2 cut(s)	2615, 3846
BstPI	GGTNACC	1 cut(s)	769
BstSFI	CTRYAG	5 cut(s)	1764, 2901, 3571, 3924, 4452
BstSLI	GKGCMC	5 cut(s)	296, 572, 2371, 2556, 4451
BstSNI	TACGTA	1 cut(s)	4515
BstUI	CGCG	1 cut(s)	3174
BstV2I	GAAGAC	4 cut(s)	111, 1553, 2481, 4082
BstX2I	RGATCY	7 cut(s)	952, 1800, 2109, 3213, 3250, 4053, 4129
BstXI	CCANNNNNNTGG	2 cut(s)	3861, 4354
BstYI	RGATCY	7 cut(s)	952, 1800, 2109, 3213, 3250, 4053, 4129
BstZ17I	GTATAC	2 cut(s)	1246, 4466
Bsu15I	ATCGAT	1 cut(s)	895
BsuI	GTATCC	2 cut(s)	2169, 3738
BsuTUI	ATCGAT	1 cut(s)	895
BtgI	CCRYGG	1 cut(s)	1931
BtrI	CACGTC	1 cut(s)	1950
BtsCI	GGATG	9 cut(s)	186, 1377, 1537, 2046, 2097, 2991, 3390, 3612, 4404
BtsI	GCAGTG	3 cut(s)	1190, 1761, 2740
BveI	ACCTGC	2 cut(s)	1757, 4034
CaiI	CAGNNNCTG	1 cut(s)	2600
CciI	TCATGA	3 cut(s)	3522, 4093, 4192
CfoI	GCGC	3 cut(s)	142, 3176, 4459
Cfr10I	RCCGGY	2 cut(s)	655, 1031
Cfr13I	GGNCC	9 cut(s)	172, 196, 658, 1061, 1140, 1984, 2768, 3040, 3061
ClaI	ATCGAT	1 cut(s)	895
CseI	GACGC	1 cut(s)	2390
CsiI	ACCWGGT	1 cut(s)	1833
DraI	TTTAAA	4 cut(s)	304, 3723, 3897, 4587
EaeI	YGGCCR	5 cut(s)	1524, 2338, 3486, 3863, 3982
Eam1104I	CTCTTC	6 cut(s)	164, 834, 882, 1893, 2841, 2860
EarI	CTCTTC	6 cut(s)	164, 834, 882, 1893, 2841, 2860
EciI	GGCGGA	2 cut(s)	193, 3975
Ecl136II	GAGCTC	2 cut(s)	1701, 3078
Eco105I	TACGTA	1 cut(s)	4515
Eco130I	CCWWGG	2 cut(s)	1527, 2101
Eco147I	AGGCCT	1 cut(s)	4019
Eco24I	GRGCYC	2 cut(s)	1703, 3080
Eco31I	GGTCTC	3 cut(s)	11, 844, 1160
Eco47I	GGWCC	5 cut(s)	1061, 1140, 1984, 2768, 3040
Eco53kI	GAGCTC	2 cut(s)	1701, 3078
Eco57I	CTGAAG	4 cut(s)	969, 2395, 2763, 3170
Eco91I	GGTNACC	1 cut(s)	769
EcoICRI	GAGCTC	2 cut(s)	1701, 3078
EcoO109I	RGGNCCY	2 cut(s)	1140, 1984
EcoO65I	GGTNACC	1 cut(s)	769
EcoRI	GAATTC	2 cut(s)	922, 1575
EcoT14I	CCWWGG	2 cut(s)	1527, 2101
EcoT22I	ATGCAT	1 cut(s)	1218
EcoT38I	GRGCYC	2 cut(s)	1703, 3080
ErhI	CCWWGG	2 cut(s)	1527, 2101
Esp3I	CGTCTC	2 cut(s)	1763, 4115
FalI	AAGNNNNNCTT	6 cut(s)	1851, 1883, 2870, 2902, 3333, 3365
FaqI	GGGAC	3 cut(s)	1153, 1269, 1997
FauI	CCCGC	2 cut(s)	2811, 3685
FauNDI	CATATG	3 cut(s)	1054, 1367, 3709
FbaI	TGATCA	3 cut(s)	1071, 2680, 3235
FblI	GTMKAC	2 cut(s)	1245, 4465
FokI	GGATG	9 cut(s)	193, 1384, 1544, 2053, 2084, 2998, 3397, 3619, 4391
FriOI	GRGCYC	2 cut(s)	1703, 3080
GlaI	GCGC	3 cut(s)	141, 3175, 4458
GsaI	CCCAGC	4 cut(s)	59, 792, 1140, 1984
GsuI	CTGGAG	2 cut(s)	131, 1717
HaeII	RGCGCY	1 cut(s)	143
HapII	CCGG	6 cut(s)	175, 199, 656, 1032, 1180, 2124
HgaI	GACGC	1 cut(s)	2390
HhaI	GCGC	3 cut(s)	142, 3176, 4459
Hin6I	GCGC	3 cut(s)	140, 3174, 4457
HinP1I	GCGC	3 cut(s)	140, 3174, 4457
HincII	GTYRAC	1 cut(s)	1309
HindII	GTYRAC	1 cut(s)	1309
HindIII	AAGCTT	4 cut(s)	1590, 1674, 3761, 4256
HpaI	GTTAAC	1 cut(s)	1309
HpaII	CCGG	6 cut(s)	175, 199, 656, 1032, 1180, 2124
HphI	GGTGA	5 cut(s)	1352, 2138, 2324, 2618, 4257
Hpy166II	GTNNAC	9 cut(s)	570, 1201, 1246, 1309, 2261, 2884, 3055, 4449, 4466
Hpy8I	GTNNAC	9 cut(s)	570, 1201, 1246, 1309, 2261, 2884, 3055, 4449, 4466
HpyCH4IV	ACGT	4 cut(s)	1949, 2006, 2350, 4514
HpySE526I	ACGT	4 cut(s)	1949, 2006, 2350, 4514
HspAI	GCGC	3 cut(s)	140, 3174, 4457
KflI	GGGWCCC	1 cut(s)	1984
KroI	GCCGGC	1 cut(s)	1031
KroNI	GCCGGC	1 cut(s)	1033
Ksp22I	TGATCA	3 cut(s)	1071, 2680, 3235
KspAI	GTTAAC	1 cut(s)	1309
LmnI	GCTCC	6 cut(s)	86, 112, 1698, 3075, 3829, 4293
MabI	ACCWGGT	1 cut(s)	1833
MaeII	ACGT	4 cut(s)	1949, 2006, 2350, 4514
MfeI	CAATTG	6 cut(s)	1920, 2637, 3231, 3369, 3474, 3879
MflI	RGATCY	7 cut(s)	952, 1800, 2109, 3213, 3250, 4053, 4129
MhlI	GDGCHC	8 cut(s)	296, 572, 1703, 2371, 2556, 3080, 4254, 4451
MlsI	TGGCCA	1 cut(s)	3865
MluNI	TGGCCA	1 cut(s)	3865
MlyI	GAGTC	5 cut(s)	1251, 2669, 2877, 3479, 3836
MmeI	TCCRAC	3 cut(s)	1402, 2680, 3878
Mox20I	TGGCCA	1 cut(s)	3865
Mph1103I	ATGCAT	1 cut(s)	1218
MroNI	GCCGGC	1 cut(s)	1031
MroXI	GAANNNNTTC	4 cut(s)	1429, 2202, 3918, 4569
MscI	TGGCCA	1 cut(s)	3865
MslI	CAYNNNNRTG	6 cut(s)	255, 627, 1293, 1370, 1688, 2631
Msp20I	TGGCCA	1 cut(s)	3865
MspA1I	CMGCKG	2 cut(s)	446, 1721
MspCI	CTTAAG	3 cut(s)	764, 1580, 4337
MspI	CCGG	6 cut(s)	175, 199, 656, 1032, 1180, 2124
MunI	CAATTG	6 cut(s)	1920, 2637, 3231, 3369, 3474, 3879
Mva1269I	GAATGC	2 cut(s)	3435, 4183
MvnI	CGCG	1 cut(s)	3174
NaeI	GCCGGC	1 cut(s)	1033
NciI	CCSGG	2 cut(s)	175, 1180
NdeI	CATATG	3 cut(s)	1054, 1367, 3709
NgoMIV	GCCGGC	1 cut(s)	1031
NlaIV	GGNNCC	9 cut(s)	239, 1062, 1141, 1802, 1985, 1986, 3673, 4055, 4131
NmeAIII	GCCGAG	1 cut(s)	461
NmuCI	GTSAC	6 cut(s)	649, 694, 1286, 1340, 1723, 2494
NsiI	ATGCAT	1 cut(s)	1218
NspI	RCATGY	2 cut(s)	1220, 3646
NspV	TTCGAA	3 cut(s)	230, 4143, 4420
OliI	CACNNNNGTG	1 cut(s)	1293
PaeI	GCATGC	1 cut(s)	3646
PagI	TCATGA	3 cut(s)	3522, 4093, 4192
PaqCI	CACCTGC	2 cut(s)	1757, 4034
PceI	AGGCCT	1 cut(s)	4019
PcsI	WCGNNNNNNNCGW	1 cut(s)	3736
PctI	GAATGC	2 cut(s)	3435, 4183
PdiI	GCCGGC	1 cut(s)	1033
PdmI	GAANNNNTTC	4 cut(s)	1429, 2202, 3918, 4569
PfeI	GAWTC	9 cut(s)	273, 1884, 2923, 2998, 3194, 3220, 3532, 4162, 4262
Pfl23II	CGTACG	1 cut(s)	4515
PflMI	CCANNNNNTGG	2 cut(s)	3872, 4046
PfoI	TCCNGGA	2 cut(s)	108, 276
PleI	GAGTC	5 cut(s)	1251, 2669, 2876, 3478, 3836
PpsI	GAGTC	5 cut(s)	1251, 2669, 2876, 3478, 3836
Ppu21I	YACGTR	1 cut(s)	4515
PpuMI	RGGWCCY	2 cut(s)	1140, 1984
PshAI	GACNNNNGTC	2 cut(s)	2615, 3846
PsiI	TTATAA	1 cut(s)	912
Psp124BI	GAGCTC	2 cut(s)	1703, 3080
Psp1406I	AACGTT	1 cut(s)	2006
Psp5II	RGGWCCY	2 cut(s)	1140, 1984
PspEI	GGTNACC	1 cut(s)	769
PspFI	CCCAGC	4 cut(s)	55, 788, 1136, 1980
PspLI	CGTACG	1 cut(s)	4515
PspN4I	GGNNCC	9 cut(s)	239, 1062, 1141, 1802, 1985, 1986, 3673, 4055, 4131
PspPI	GGNCC	9 cut(s)	172, 196, 658, 1061, 1140, 1984, 2768, 3040, 3061
PspPPI	RGGWCCY	2 cut(s)	1140, 1984
PstI	CTGCAG	3 cut(s)	1768, 2905, 3575
PstNI	CAGNNNCTG	1 cut(s)	2600
PsuI	RGATCY	7 cut(s)	952, 1800, 2109, 3213, 3250, 4053, 4129
PvuII	CAGCTG	2 cut(s)	446, 1721
RseI	CAYNNNNRTG	6 cut(s)	255, 627, 1293, 1370, 1688, 2631
SacI	GAGCTC	2 cut(s)	1703, 3080
Sau96I	GGNCC	9 cut(s)	172, 196, 658, 1061, 1140, 1984, 2768, 3040, 3061
SchI	GAGTC	5 cut(s)	1251, 2669, 2877, 3479, 3836
SduI	GDGCHC	8 cut(s)	296, 572, 1703, 2371, 2556, 3080, 4254, 4451
SexAI	ACCWGGT	1 cut(s)	1833
SfcI	CTRYAG	5 cut(s)	1764, 2901, 3571, 3924, 4452
SfuI	TTCGAA	3 cut(s)	230, 4143, 4420
SinI	GGWCC	5 cut(s)	1061, 1140, 1984, 2768, 3040
SmiI	ATTTAAAT	1 cut(s)	3723
SmiMI	CAYNNNNRTG	6 cut(s)	255, 627, 1293, 1370, 1688, 2631
SmlI	CTYRAG	6 cut(s)	764, 857, 989, 1580, 3764, 4337
SmoI	CTYRAG	6 cut(s)	764, 857, 989, 1580, 3764, 4337
SnaBI	TACGTA	1 cut(s)	4515
SpeI	ACTAGT	2 cut(s)	1292, 2614
SphI	GCATGC	1 cut(s)	3646
SseBI	AGGCCT	1 cut(s)	4019
SsiI	CCGC	9 cut(s)	178, 506, 854, 2337, 2818, 3172, 3485, 3692, 3960
SspI	AATATT	2 cut(s)	2203, 2952
SstI	GAGCTC	2 cut(s)	1703, 3080
StuI	AGGCCT	1 cut(s)	4019
StyI	CCWWGG	2 cut(s)	1527, 2101
SwaI	ATTTAAAT	1 cut(s)	3723
TaiI	ACGT	4 cut(s)	1952, 2009, 2353, 4517
TaqI	TCGA	8 cut(s)	230, 611, 744, 895, 2508, 3620, 4143, 4420
TaqII	GACCGA	1 cut(s)	4076
TatI	WGTACW	5 cut(s)	598, 2235, 2839, 3801, 4439
TauI	GCSGC	3 cut(s)	509, 2340, 3488
TfiI	GAWTC	9 cut(s)	273, 1884, 2923, 2998, 3194, 3220, 3532, 4162, 4262
TseFI	GTSAC	6 cut(s)	649, 694, 1286, 1340, 1723, 2494
Tsp45I	GTSAC	6 cut(s)	649, 694, 1286, 1340, 1723, 2494
TspGWI	ACGGA	6 cut(s)	1053, 1579, 3226, 3619, 4229, 4615
Van91I	CCANNNNNTGG	2 cut(s)	3872, 4046
Vha464I	CTTAAG	3 cut(s)	764, 1580, 4337
VneI	GTGCAC	2 cut(s)	568, 4447
VpaK11BI	GGWCC	5 cut(s)	1061, 1140, 1984, 2768, 3040
XapI	RAATTY	9 cut(s)	305, 922, 1575, 1822, 2326, 2510, 3718, 4569, 4614
XbaI	TCTAGA	1 cut(s)	3124
XceI	RCATGY	2 cut(s)	1220, 3646
XmiI	GTMKAC	2 cut(s)	1245, 4465
XmnI	GAANNNNTTC	4 cut(s)	1429, 2202, 3918, 4569
Zsp2I	ATGCAT	1 cut(s)	1218

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.