Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000006

Orthogroup ID

OG0007932

Physical Location & Seq

Genomic Coordinates Reverse (-)

28435828 .. 28436301

Gene Structure 474 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug06G0180000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 474 bp

ATGGCCACAGATGATTTCAGCTTCCCCACAGTACACAAAAGCAGTAGTACTAGTAACATCCATTTCCCTCCTCTGTGGCGGCCATCTCCGGCAGCCGCCTGCACAGGTGATGAAGAAGATCACGCAGCCTTAATAACTAGTCCTGTGGAGAATATCGAGGGGGTTGATGATGATCAGATAATAGTTAGTAGTGATGTTCGAGATCAGGAGGAGAAAATGGACATGCTATGGGAGGATTTCAATGAGGAATTGTATCCGGTAAGGTCAACGTCGGATTACAGTTACGCGTCCGGCGAGATGCTGCAACTGGGTTGTGTAGGTCTTGGTGCTTTCAACTTGTCCAAATCTAATGCTGCTAGAAATAGTAGTACTATTACAAACCCAGGTGTGGTCGTGATTGTCAAACTCTTGAAAAAGCTATTCTTCCTCCATAATTCTCATCATCACAACCTCAACAAACCTGCAAATCGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000325 GO:0001101 GO:0003674 GO:0003824 GO:0004888 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0006810 GO:0006873 GO:0006875 GO:0006950 GO:0006970 GO:0007154 GO:0007165 GO:0008150 GO:0008281 GO:0009628 GO:0009651 GO:0009719 GO:0009725 GO:0009737 GO:0009738 GO:0009755 GO:0009987 GO:0010033 GO:0010118 GO:0015399 GO:0015405 GO:0016020 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0019725 GO:0022804 GO:0022857 GO:0023052 GO:0030003 GO:0030004 GO:0030007 GO:0031090 GO:0032870 GO:0033993 GO:0038023 GO:0042221 GO:0042592 GO:0042623 GO:0042626 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043492 GO:0044422 GO:0044424 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0048878 GO:0050789 GO:0050794 GO:0050801 GO:0050896 GO:0051179 GO:0051234 GO:0051716 GO:0055065 GO:0055067 GO:0055075 GO:0055080 GO:0055082 GO:0055085 GO:0060089 GO:0065007 GO:0065008 GO:0070887 GO:0071215 GO:0071229 GO:0071310 GO:0071396 GO:0071495 GO:0097305 GO:0097306 GO:0098588 GO:0098771 GO:0098805 GO:1901527 GO:1901700 GO:1901701

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

ABC_membrane ABC_tran

Protein Analysis

157

Amino Acids

17.38

Weight (kDa)

4.97

Isoelectric Point (pI)

65.65

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007932)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G04120 AT1G04120 AT1G04120
fragaria_vesca	FvH4_2g20350 FvH4_2g20350 FvH4_2g20350
malus_domestica	MD05G1187600.v1.1 MD10G1175300.v1.1
prunus_persica	Prupe.8G214600_v2.0.a1 Prupe.8G214600_v2.0.a1 Prupe.8G214600_v2.0.a1
pyrus_communis	pycom05g17240 pycom10g15100
rosa_chinensis	RchiOBHm_Chr6g0286471
rosa_laevigata	RLG00000012569
rosa_multiflora	Rmu_sc0034370.1_g000001
rosa_roxburghii	Rroxscaffold_7G00182310
rosa_rugosa	Rorug06G0179900 Rorug06G0180000
rosa_samantha	Rh6AG292200 Rh6BG295800 Rh6CG296500 Rh6DG288300
rosa_wichuraiana	Rw6G025200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	469
AccII	CGCG	1 cut(s)	287
AciI	CCGC	2 cut(s)	79, 96
AcoI	YGGCCR	2 cut(s)	3, 80
AfaI	GTAC	3 cut(s)	33, 49, 370
AfiI	CCNNNNNNNGG	1 cut(s)	388
AflIII	ACRYGT	1 cut(s)	285
AgsI	TTSAA	3 cut(s)	241, 334, 412
AhlI	ACTAGT	2 cut(s)	50, 137
AjnI	CCWGG	1 cut(s)	382
AluBI	AGCT	2 cut(s)	21, 418
AluI	AGCT	2 cut(s)	21, 418
AoxI	GGCC	2 cut(s)	3, 80
ApeKI	GCWGC	4 cut(s)	92, 125, 301, 353
AsuHPI	GGTGA	1 cut(s)	119
BalI	TGGCCA	1 cut(s)	5
BbvI	GCAGC	4 cut(s)	104, 137, 288, 340
BccI	CCATC	1 cut(s)	91
BciT130I	CCWGG	1 cut(s)	384
BciVI	GTATCC	1 cut(s)	264
BclI	TGATCA	1 cut(s)	172
BcuI	ACTAGT	2 cut(s)	50, 137
BfaI	CTAG	3 cut(s)	51, 138, 357
BfuAI	ACCTGC	1 cut(s)	469
BfuI	GTATCC	1 cut(s)	264
BisI	GCNGC	6 cut(s)	80, 93, 96, 126, 302, 354
BlsI	GCNGC	6 cut(s)	81, 94, 97, 127, 303, 355
BmcAI	AGTACT	2 cut(s)	49, 370
Bme1390I	CCNGG	1 cut(s)	384
BmrFI	CCNGG	1 cut(s)	384
BmrI	ACTGGG	1 cut(s)	317
BmsI	GCATC	1 cut(s)	288
BmuI	ACTGGG	1 cut(s)	317
BsaBI	GATNNNNATC	1 cut(s)	171
BsaJI	CCNNGG	1 cut(s)	382
BsaWI	WCCGGW	1 cut(s)	256
Bsc4I	CCNNNNNNNGG	1 cut(s)	388
Bse1I	ACTGG	1 cut(s)	312
Bse8I	GATNNNNATC	1 cut(s)	171
BseBI	CCWGG	1 cut(s)	384
BseDI	CCNNGG	1 cut(s)	382
BseGI	GGATG	1 cut(s)	57
BseJI	GATNNNNATC	1 cut(s)	171
BseLI	CCNNNNNNNGG	1 cut(s)	388
BseNI	ACTGG	1 cut(s)	312
BseRI	GAGGAG	2 cut(s)	60, 224
BseXI	GCAGC	4 cut(s)	104, 137, 288, 340
BsgI	GTGCAG	1 cut(s)	85
Bsh1236I	CGCG	1 cut(s)	287
BshFI	GGCC	2 cut(s)	5, 82
BsiSI	CCGG	3 cut(s)	89, 257, 291
BslI	CCNNNNNNNGG	1 cut(s)	388
BsnI	GGCC	2 cut(s)	5, 82
Bsp143I	GATC	3 cut(s)	118, 172, 202
BspACI	CCGC	2 cut(s)	79, 96
BspANI	GGCC	2 cut(s)	5, 82
BspFNI	CGCG	1 cut(s)	287
BspMI	ACCTGC	1 cut(s)	469
BsrI	ACTGG	1 cut(s)	312
BssECI	CCNNGG	1 cut(s)	382
BssMI	GATC	3 cut(s)	118, 172, 202
Bst2UI	CCWGG	1 cut(s)	384
Bst4CI	ACNGT	2 cut(s)	31, 281
BstC8I	GCNNGC	1 cut(s)	100
BstF5I	GGATG	1 cut(s)	57
BstFNI	CGCG	1 cut(s)	287
BstKTI	GATC	3 cut(s)	121, 175, 205
BstMBI	GATC	3 cut(s)	118, 172, 202
BstNI	CCWGG	1 cut(s)	384
BstNSI	RCATGY	1 cut(s)	226
BstSCI	CCNGG	1 cut(s)	382
BstUI	CGCG	1 cut(s)	287
BstV1I	GCAGC	4 cut(s)	104, 137, 288, 340
BsuI	GTATCC	1 cut(s)	264
BsuRI	GGCC	2 cut(s)	5, 82
BtsCI	GGATG	1 cut(s)	57
BveI	ACCTGC	1 cut(s)	469
Cac8I	GCNNGC	1 cut(s)	100
CseI	GACGC	1 cut(s)	276
Csp6I	GTAC	3 cut(s)	32, 48, 369
CviAII	CATG	1 cut(s)	223
CviJI	RGCY	6 cut(s)	5, 21, 82, 95, 128, 418
CviKI_1	RGCY	6 cut(s)	5, 21, 82, 95, 128, 418
CviQI	GTAC	3 cut(s)	32, 48, 369
DpnI	GATC	3 cut(s)	120, 174, 204
DpnII	GATC	3 cut(s)	118, 172, 202
EaeI	YGGCCR	2 cut(s)	3, 80
EcoRII	CCWGG	1 cut(s)	382
FaeI	CATG	1 cut(s)	226
FaiI	YATR	3 cut(s)	224, 229, 432
FalI	AAGNNNNNCTT	2 cut(s)	407, 439
FatI	CATG	1 cut(s)	222
FbaI	TGATCA	1 cut(s)	172
Fnu4HI	GCNGC	6 cut(s)	80, 93, 96, 126, 302, 354
FokI	GGATG	1 cut(s)	44
Fsp4HI	GCNGC	6 cut(s)	80, 93, 96, 126, 302, 354
FspBI	CTAG	3 cut(s)	51, 138, 357
GluI	GCNGC	6 cut(s)	80, 93, 96, 126, 302, 354
HaeIII	GGCC	2 cut(s)	5, 82
HapII	CCGG	3 cut(s)	89, 257, 291
HgaI	GACGC	1 cut(s)	276
Hin1II	CATG	1 cut(s)	226
HincII	GTYRAC	1 cut(s)	267
HindII	GTYRAC	1 cut(s)	267
HpaII	CCGG	3 cut(s)	89, 257, 291
HphI	GGTGA	1 cut(s)	119
Hpy166II	GTNNAC	2 cut(s)	34, 267
Hpy188I	TCNGA	2 cut(s)	177, 274
Hpy188III	TCNNGA	4 cut(s)	200, 206, 394, 409
Hpy8I	GTNNAC	2 cut(s)	34, 267
Hpy99I	CGWCG	1 cut(s)	274
HpyCH4III	ACNGT	2 cut(s)	31, 281
HpyCH4IV	ACGT	1 cut(s)	269
HpyCH4V	TGCA	3 cut(s)	102, 304, 464
HpySE526I	ACGT	1 cut(s)	269
Hsp92II	CATG	1 cut(s)	226
Ksp22I	TGATCA	1 cut(s)	172
Kzo9I	GATC	3 cut(s)	118, 172, 202
Lsp1109I	GCAGC	4 cut(s)	104, 137, 288, 340
LweI	GCATC	1 cut(s)	288
MaeI	CTAG	3 cut(s)	51, 138, 357
MaeII	ACGT	1 cut(s)	269
MaeIII	GTNAC	2 cut(s)	53, 281
MalI	GATC	3 cut(s)	120, 174, 204
MboI	GATC	3 cut(s)	118, 172, 202
MboII	GAAGA	3 cut(s)	125, 128, 415
MlsI	TGGCCA	1 cut(s)	5
MluCI	AATT	2 cut(s)	248, 433
MluI	ACGCGT	1 cut(s)	285
MluNI	TGGCCA	1 cut(s)	5
MmeI	TCCRAC	1 cut(s)	252
MnlI	CCTC	8 cut(s)	78, 81, 151, 202, 226, 238, 437, 461
Mox20I	TGGCCA	1 cut(s)	5
MscI	TGGCCA	1 cut(s)	5
MseI	TTAA	1 cut(s)	131
Msp20I	TGGCCA	1 cut(s)	5
MspI	CCGG	3 cut(s)	89, 257, 291
MspR9I	CCNGG	1 cut(s)	384
MvaI	CCWGG	1 cut(s)	384
MvnI	CGCG	1 cut(s)	287
NdeII	GATC	3 cut(s)	118, 172, 202
NlaIII	CATG	1 cut(s)	226
NspI	RCATGY	1 cut(s)	226
PcsI	WCGNNNNNNNCGW	1 cut(s)	291
PkrI	GCNGC	6 cut(s)	81, 94, 97, 127, 303, 355
Psp6I	CCWGG	1 cut(s)	382
PspGI	CCWGG	1 cut(s)	382
RsaI	GTAC	3 cut(s)	33, 49, 370
RsaNI	GTAC	3 cut(s)	32, 48, 369
SaqAI	TTAA	1 cut(s)	131
SatI	GCNGC	6 cut(s)	80, 93, 96, 126, 302, 354
Sau3AI	GATC	3 cut(s)	118, 172, 202
ScaI	AGTACT	2 cut(s)	49, 370
ScrFI	CCNGG	1 cut(s)	384
SetI	ASST	9 cut(s)	23, 109, 266, 272, 322, 388, 420, 453, 463
SfaNI	GCATC	1 cut(s)	288
SpeI	ACTAGT	2 cut(s)	50, 137
Sse9I	AATT	2 cut(s)	248, 433
SsiI	CCGC	2 cut(s)	79, 96
SspMI	CTAG	3 cut(s)	51, 138, 357
StyD4I	CCNGG	1 cut(s)	382
TaaI	ACNGT	2 cut(s)	31, 281
TaiI	ACGT	1 cut(s)	272
TaqI	TCGA	2 cut(s)	156, 199
TasI	AATT	2 cut(s)	248, 433
TatI	WGTACW	3 cut(s)	31, 47, 368
TauI	GCSGC	2 cut(s)	82, 98
Tru1I	TTAA	1 cut(s)	131
Tru9I	TTAA	1 cut(s)	131
TseI	GCWGC	4 cut(s)	92, 125, 301, 353
TspDTI	ATGAA	1 cut(s)	126
XceI	RCATGY	1 cut(s)	226
XspI	CTAG	3 cut(s)	51, 138, 357
ZrmI	AGTACT	2 cut(s)	49, 370

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.