RchiOBHm_Chr6g0303401

No description available

Basic Information

Type: gene
Biological Identity
rosa_chinensis
6
Physical Location & Seq
Reverse (-)
63123616 .. 63124973
1358 bp
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UTR
Exon/CDS
Intron
PRQ27256

Sequence Viewer

Length: 213 bp
ATGACTTTTTTTATGGGTGTTCTCGTCTATTTACATTTTCTCCTACCTTATCTATTAGTCAACGATTCAAAGGCTGCAAATAGGATTAAACCCTTTAAGAAACTAGGAGCAACTAATGTTGGCACAAGCACTAAGAATGGAGATGGAGCAAAACCAGGAGCCCACAAGCCACAAGCCATGGAAGTACTGATGCTTGCAGCTGCAAACTTATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

70

Amino Acids

7.53

Weight (kDa)

9.9

Isoelectric Point (pI)

3.66

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AfaI GTAC 1 cut(s) 186
AgsI TTSAA 1 cut(s) 69
AjnI CCWGG 1 cut(s) 154
AluBI AGCT 1 cut(s) 200
AluI AGCT 1 cut(s) 200
ApeKI GCWGC 3 cut(s) 74, 197, 200
BanII GRGCYC 1 cut(s) 163
BbvI GCAGC 3 cut(s) 61, 187, 209
BccI CCATC 1 cut(s) 137
BciT130I CCWGG 1 cut(s) 156
BfaI CTAG 1 cut(s) 104
BisI GCNGC 3 cut(s) 75, 198, 201
BlsI GCNGC 3 cut(s) 76, 199, 202
BmcAI AGTACT 1 cut(s) 186
Bme1390I CCNGG 1 cut(s) 156
BmiI GGNNCC 1 cut(s) 160
BmrFI CCNGG 1 cut(s) 156
BmsI GCATC 1 cut(s) 180
BsaJI CCNNGG 1 cut(s) 177
BsaXI ACNNNNNCTCC 2 cut(s) 24, 54
BseBI CCWGG 1 cut(s) 156
BseDI CCNNGG 1 cut(s) 177
BseXI GCAGC 3 cut(s) 61, 187, 209
Bsp1286I GDGCHC 1 cut(s) 163
Bsp19I CCATGG 1 cut(s) 177
BspLI GGNNCC 1 cut(s) 160
BssECI CCNNGG 1 cut(s) 177
BssT1I CCWWGG 1 cut(s) 177
Bst2UI CCWGG 1 cut(s) 156
BstC8I GCNNGC 1 cut(s) 195
BstDEI CTNAG 1 cut(s) 132
BstDSI CCRYGG 1 cut(s) 177
BstNI CCWGG 1 cut(s) 156
BstSCI CCNGG 1 cut(s) 154
BstV1I GCAGC 3 cut(s) 61, 187, 209
BtgI CCRYGG 1 cut(s) 177
Cac8I GCNNGC 1 cut(s) 195
Csp6I GTAC 1 cut(s) 185
CviAII CATG 1 cut(s) 178
CviJI RGCY 5 cut(s) 74, 161, 169, 176, 200
CviKI_1 RGCY 5 cut(s) 74, 161, 169, 176, 200
CviQI GTAC 1 cut(s) 185
DdeI CTNAG 1 cut(s) 132
Eco130I CCWWGG 1 cut(s) 177
Eco24I GRGCYC 1 cut(s) 163
EcoRII CCWGG 1 cut(s) 154
EcoT14I CCWWGG 1 cut(s) 177
EcoT38I GRGCYC 1 cut(s) 163
ErhI CCWWGG 1 cut(s) 177
FaeI CATG 1 cut(s) 181
FaiI YATR 3 cut(s) 14, 179, 211
FatI CATG 1 cut(s) 177
Fnu4HI GCNGC 3 cut(s) 75, 198, 201
FriOI GRGCYC 1 cut(s) 163
Fsp4HI GCNGC 3 cut(s) 75, 198, 201
FspBI CTAG 1 cut(s) 104
GluI GCNGC 3 cut(s) 75, 198, 201
Hin1II CATG 1 cut(s) 181
HincII GTYRAC 1 cut(s) 61
HindII GTYRAC 1 cut(s) 61
HinfI GANTC 1 cut(s) 65
Hpy166II GTNNAC 1 cut(s) 61
Hpy8I GTNNAC 1 cut(s) 61
HpyCH4V TGCA 3 cut(s) 77, 197, 203
HpyF3I CTNAG 1 cut(s) 132
Hsp92II CATG 1 cut(s) 181
LmnI GCTCC 3 cut(s) 107, 146, 158
LpnPI CCDG 2 cut(s) 141, 168
Lsp1109I GCAGC 3 cut(s) 61, 187, 209
LweI GCATC 1 cut(s) 180
MaeI CTAG 1 cut(s) 104
MhlI GDGCHC 1 cut(s) 163
MseI TTAA 2 cut(s) 87, 96
MspA1I CMGCKG 1 cut(s) 200
MspR9I CCNGG 1 cut(s) 156
MvaI CCWGG 1 cut(s) 156
NcoI CCATGG 1 cut(s) 177
NlaIII CATG 1 cut(s) 181
NlaIV GGNNCC 1 cut(s) 160
PfeI GAWTC 1 cut(s) 65
PkrI GCNGC 3 cut(s) 76, 199, 202
Psp6I CCWGG 1 cut(s) 154
PspGI CCWGG 1 cut(s) 154
PspN4I GGNNCC 1 cut(s) 160
PvuII CAGCTG 1 cut(s) 200
RsaI GTAC 1 cut(s) 186
RsaNI GTAC 1 cut(s) 185
SaqAI TTAA 2 cut(s) 87, 96
SatI GCNGC 3 cut(s) 75, 198, 201
ScaI AGTACT 1 cut(s) 186
ScrFI CCNGG 1 cut(s) 156
SduI GDGCHC 1 cut(s) 163
SetI ASST 2 cut(s) 49, 202
SfaNI GCATC 1 cut(s) 180
SgeI CNNG 9 cut(s) 35, 116, 138, 167, 168, 178, 185, 190, 206
SspMI CTAG 1 cut(s) 104
StyD4I CCNGG 1 cut(s) 154
StyI CCWWGG 1 cut(s) 177
TatI WGTACW 1 cut(s) 184
TfiI GAWTC 1 cut(s) 65
Tru1I TTAA 2 cut(s) 87, 96
Tru9I TTAA 2 cut(s) 87, 96
TseI GCWGC 3 cut(s) 74, 197, 200
XspI CTAG 1 cut(s) 104
ZrmI AGTACT 1 cut(s) 186
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.