Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000250.1

Orthogroup ID

OG0014859

Physical Location & Seq

Genomic Coordinates Forward (+)

45182 .. 47606

Gene Structure 2425 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000250.1_g000012.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1584 bp

atgcagggtccaattacaaattggtatcgaatacccggtagtgaaccagggactgggcatttaccaattactaataatgcggatgctattgacatgcttcaattcattcccaagagcaacatgattttggaagtatttattgtctgtctgggtgaaagaagaatgtttgcaccttgggagttagatagctatgatgacgaaatagaccaccaactatgcataggccatgtcattgatgatttagaagatgggccagaagtaatgatgaatgagcagcaattagtagttcaggatggaccaattcaagttgatgagctgcacaaagaagccaaacagaggcctaaagataaagggaagcaaaagatggttgttgaagacagtgaagttccaaagaagaagaaaggcagacctaagaaagagctgaaaaggaggtatgacacaagattcaaatgggagtgctcctattctcaagaaaacttatatgatgatgatgatgaatctgatagtacatcaagctcaaaagatctggactatgacgctatagtcgacaatgattatgaaatttttgatgaagatgatgaggtactttttcaaacaaacatggatggtgatctaagcaagcctgaagaatgggaagagatggggttttctggtcatatttttgatggtgatggagacaactcatatgacctgcatagtttaaatggtgatttagatgagaatggtgaagatgttgggaagtttaaagttaagggaaagaggaggtggtctaaatggaaggagttcaacaagatgtttgacatgaaggggccaagttttgaactcagaatggcatttcccaattttgtagtgttcaaggaagcaatacggaagcatgctgtattgactaaaaaagagcttcgttttgcaagtcctgataaaaatactccaactgtgaacattaggactttgaggatggagcacaagtgtagtgaactcaaaggtagggtatatcactgtcatgcccctttcattgcttctgagtatagtgcaagcttcacaaatgatgagaaatggtcaagagagggtattcaaactactgttggcagagactttggcatgaatgttggttaccaaatgtgttatagagccaagaaaagagcaatcaagcaagctcaaggtagttttaaagatcaatacaatctattagaaagctatgctcatgagctaaagaagaaccctggaacatcaatttggatacaaattgagatggaaggtccaagggttgagaagttgttgaaaaagaatgcagattggagccaagaatatagagcattggagtctaataacatgaggtttgagatacatggcagaggtgttacttgtagttcaggtgttatttctcattatgttgtgcaattggacaacatggcatgtacatgtaaaagatgcgatttgagtggacttccctgtggacatgctattgcagcaatttacttcaagggatggtccgctaatgactttgttgatgagcaccataaacaaaagaagtatttgatggcttacgaaccaaggatcaaccctatagctggggtcgatgagtag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DBD_Tnp_Mut MULE SWIM

Protein Analysis

527

Amino Acids

60.87

Weight (kDa)

5.42

Isoelectric Point (pI)

37.62

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0014859)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr6g0303401
rosa_laevigata	RLG00000009556 RLG00000019103 RLG00000023233
rosa_multiflora	Rmu_sc0000211.1_g000002 Rmu_sc0000250.1_g000012
rosa_roxburghii	Rroxscaffold_3G00252420 Rroxscaffold_5G00341090
rosa_rugosa	Rorug01G0086700 Rorug01G0086900 Rorug03G0350800
rosa_samantha	Rh1AG415700 Rh3DG110600 Rh4BG066000 Rh4CG072600 Rh4DG062900 Rh4DG429700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	542
Acc36I	ACCTGC	1 cut(s)	699
AccB7I	CCANNNNNTGG	1 cut(s)	53
AccI	GTMKAC	1 cut(s)	546
AciI	CCGC	2 cut(s)	80, 1491
AclWI	GGATC	1 cut(s)	1562
AcsI	RAATTY	1 cut(s)	561
AcuI	CTGAAG	1 cut(s)	645
AfaI	GTAC	3 cut(s)	508, 585, 1417
AfiI	CCNNNNNNNGG	3 cut(s)	53, 336, 1568
AflIII	ACRYGT	1 cut(s)	1418
AjnI	CCWGG	2 cut(s)	46, 1219
AjuI	GAANNNNNNNTTGG	2 cut(s)	1216, 1248
Alw21I	GWGCWC	3 cut(s)	461, 963, 1515
Alw26I	GTCTC	2 cut(s)	669, 1083
AlwI	GGATC	1 cut(s)	1562
AlwNI	CAGNNNCTG	1 cut(s)	53
AoxI	GGCC	4 cut(s)	223, 251, 338, 809
ApeKI	GCWGC	3 cut(s)	274, 316, 1466
ApoI	RAATTY	1 cut(s)	561
Asp700I	GAANNNNTTC	1 cut(s)	782
AspS9I	GGNCC	6 cut(s)	8, 251, 296, 809, 1256, 1488
AsuC2I	CCSGG	1 cut(s)	36
AsuHPI	GGTGA	5 cut(s)	164, 620, 680, 719, 737
AvaII	GGWCC	4 cut(s)	8, 296, 1256, 1488
BbsI	GAAGAC	1 cut(s)	381
Bbv12I	GWGCWC	3 cut(s)	461, 963, 1515
BbvI	GCAGC	3 cut(s)	286, 303, 1478
BciT130I	CCWGG	2 cut(s)	48, 1221
BciVI	GTATCC	1 cut(s)	1230
BcnI	CCSGG	1 cut(s)	36
BcoDI	GTCTC	2 cut(s)	669, 1083
BfmI	CTRYAG	2 cut(s)	540, 1563
BfuAI	ACCTGC	1 cut(s)	699
BfuI	GTATCC	1 cut(s)	1230
BglII	AGATCT	1 cut(s)	523
BisI	GCNGC	3 cut(s)	275, 317, 1467
BlsI	GCNGC	3 cut(s)	276, 318, 1468
Bme1390I	CCNGG	3 cut(s)	36, 48, 1221
Bme18I	GGWCC	4 cut(s)	8, 296, 1256, 1488
BmgT120I	GGNCC	6 cut(s)	8, 251, 296, 809, 1256, 1488
BmiI	GGNNCC	3 cut(s)	9, 810, 1298
BmrFI	CCNGG	3 cut(s)	36, 48, 1221
BmrI	ACTGGG	1 cut(s)	63
BmsI	GCATC	2 cut(s)	73, 1418
BmuI	ACTGGG	1 cut(s)	63
BpiI	GAAGAC	1 cut(s)	381
BpuEI	CTTGAG	2 cut(s)	453, 1140
BpuMI	CCSGG	1 cut(s)	36
BsaBI	GATNNNNATC	1 cut(s)	609
BsaJI	CCNNGG	5 cut(s)	47, 173, 1219, 1259, 1550
BsaXI	ACNNNNNCTCC	2 cut(s)	950, 980
Bsc4I	CCNNNNNNNGG	3 cut(s)	53, 336, 1568
Bse1I	ACTGG	1 cut(s)	58
Bse3DI	GCAATG	1 cut(s)	1011
Bse8I	GATNNNNATC	1 cut(s)	609
BseBI	CCWGG	2 cut(s)	48, 1221
BseDI	CCNNGG	5 cut(s)	47, 173, 1219, 1259, 1550
BseGI	GGATG	5 cut(s)	88, 298, 610, 960, 1490
BseJI	GATNNNNATC	1 cut(s)	609
BseLI	CCNNNNNNNGG	3 cut(s)	53, 336, 1568
BseMI	GCAATG	1 cut(s)	1011
BseMII	CTCAG	2 cut(s)	838, 1011
BseNI	ACTGG	1 cut(s)	58
BseRI	GAGGAG	1 cut(s)	775
BseXI	GCAGC	3 cut(s)	286, 303, 1478
BseYI	CCCAGC	1 cut(s)	1568
BsgI	GTGCAG	1 cut(s)	302
BshFI	GGCC	4 cut(s)	225, 253, 340, 811
BsiHKAI	GWGCWC	3 cut(s)	461, 963, 1515
BsiSI	CCGG	1 cut(s)	36
BslFI	GGGAC	1 cut(s)	64
BslI	CCNNNNNNNGG	3 cut(s)	53, 336, 1568
BsmAI	GTCTC	2 cut(s)	669, 1083
BsmFI	GGGAC	1 cut(s)	64
BsmI	GAATGC	1 cut(s)	1291
BsnI	GGCC	4 cut(s)	225, 253, 340, 811
Bsp1286I	GDGCHC	3 cut(s)	461, 963, 1515
Bsp1407I	TGTACA	1 cut(s)	1415
Bsp143I	GATC	4 cut(s)	523, 610, 1171, 1554
BspACI	CCGC	2 cut(s)	80, 1491
BspANI	GGCC	4 cut(s)	225, 253, 340, 811
BspCNI	CTCAG	2 cut(s)	837, 1012
BspHI	TCATGA	1 cut(s)	1201
BspLI	GGNNCC	3 cut(s)	9, 810, 1298
BspMI	ACCTGC	1 cut(s)	699
BspPI	GGATC	1 cut(s)	1562
BsrDI	GCAATG	1 cut(s)	1011
BsrGI	TGTACA	1 cut(s)	1415
BsrI	ACTGG	1 cut(s)	58
BssECI	CCNNGG	5 cut(s)	47, 173, 1219, 1259, 1550
BssMI	GATC	4 cut(s)	523, 610, 1171, 1554
BssT1I	CCWWGG	3 cut(s)	173, 1259, 1550
Bst2UI	CCWGG	2 cut(s)	48, 1221
Bst4CI	ACNGT	4 cut(s)	380, 934, 998, 1081
Bst6I	CTCTTC	1 cut(s)	630
BstAUI	TGTACA	1 cut(s)	1415
BstC8I	GCNNGC	4 cut(s)	620, 876, 1033, 1152
BstDEI	CTNAG	4 cut(s)	411, 614, 824, 1020
BstEII	GGTNACC	1 cut(s)	1109
BstF5I	GGATG	5 cut(s)	88, 298, 610, 960, 1490
BstKTI	GATC	4 cut(s)	526, 613, 1174, 1557
BstMAI	GTCTC	2 cut(s)	669, 1083
BstMBI	GATC	4 cut(s)	523, 610, 1171, 1554
BstMWI	GCNNNNNNNGC	1 cut(s)	1466
BstNI	CCWGG	2 cut(s)	48, 1221
BstNSI	RCATGY	5 cut(s)	97, 878, 1416, 1422, 1460
BstPI	GGTNACC	1 cut(s)	1109
BstSCI	CCNGG	3 cut(s)	34, 46, 1219
BstSFI	CTRYAG	2 cut(s)	540, 1563
BstV1I	GCAGC	3 cut(s)	286, 303, 1478
BstV2I	GAAGAC	1 cut(s)	381
BstX2I	RGATCY	1 cut(s)	523
BstYI	RGATCY	1 cut(s)	523
BsuI	GTATCC	1 cut(s)	1230
BsuRI	GGCC	4 cut(s)	225, 253, 340, 811
BtsCI	GGATG	5 cut(s)	88, 298, 610, 960, 1490
BtsIMutI	CAGTG	2 cut(s)	385, 994
BveI	ACCTGC	1 cut(s)	699
Cac8I	GCNNGC	4 cut(s)	620, 876, 1033, 1152
CaiI	CAGNNNCTG	1 cut(s)	53
CciI	TCATGA	1 cut(s)	1201
Cfr13I	GGNCC	6 cut(s)	8, 251, 296, 809, 1256, 1488
CseI	GACGC	1 cut(s)	545
Csp6I	GTAC	3 cut(s)	507, 584, 1416
CviQI	GTAC	3 cut(s)	507, 584, 1416
DdeI	CTNAG	4 cut(s)	411, 614, 824, 1020
DpnI	GATC	4 cut(s)	525, 612, 1173, 1556
DpnII	GATC	4 cut(s)	523, 610, 1171, 1554
DraI	TTTAAA	3 cut(s)	702, 745, 1168
DrdI	GACNNNNNNGTC	1 cut(s)	542
DseDI	GACNNNNNNGTC	1 cut(s)	542
Eam1104I	CTCTTC	1 cut(s)	630
EarI	CTCTTC	1 cut(s)	630
Eco130I	CCWWGG	3 cut(s)	173, 1259, 1550
Eco147I	AGGCCT	1 cut(s)	340
Eco47I	GGWCC	4 cut(s)	8, 296, 1256, 1488
Eco57I	CTGAAG	1 cut(s)	645
Eco91I	GGTNACC	1 cut(s)	1109
EcoO65I	GGTNACC	1 cut(s)	1109
EcoRII	CCWGG	2 cut(s)	46, 1219
EcoT14I	CCWWGG	3 cut(s)	173, 1259, 1550
EcoT22I	ATGCAT	1 cut(s)	221
ErhI	CCWWGG	3 cut(s)	173, 1259, 1550
FaqI	GGGAC	1 cut(s)	64
FauNDI	CATATG	1 cut(s)	685
FblI	GTMKAC	1 cut(s)	546
Fnu4HI	GCNGC	3 cut(s)	275, 317, 1467
FokI	GGATG	5 cut(s)	95, 305, 617, 967, 1497
Fsp4HI	GCNGC	3 cut(s)	275, 317, 1467
GluI	GCNGC	3 cut(s)	275, 317, 1467
GsaI	CCCAGC	1 cut(s)	1572
HaeIII	GGCC	4 cut(s)	225, 253, 340, 811
HapII	CCGG	1 cut(s)	36
HgaI	GACGC	1 cut(s)	545
HincII	GTYRAC	1 cut(s)	547
HindII	GTYRAC	1 cut(s)	547
HindIII	AAGCTT	1 cut(s)	1033
HinfI	GANTC	3 cut(s)	444, 497, 1319
HpaII	CCGG	1 cut(s)	36
HphI	GGTGA	5 cut(s)	164, 620, 680, 719, 737
Hpy166II	GTNNAC	6 cut(s)	44, 547, 937, 974, 1442, 1454
Hpy188I	TCNGA	3 cut(s)	502, 827, 1021
Hpy188III	TCNNGA	6 cut(s)	290, 470, 527, 914, 1059, 1202
Hpy8I	GTNNAC	6 cut(s)	44, 547, 937, 974, 1442, 1454
HpyAV	CCTTC	3 cut(s)	772, 799, 1247
HpyCH4III	ACNGT	4 cut(s)	380, 934, 998, 1081
HpyF10VI	GCNNNNNNNGC	1 cut(s)	1466
HpyF3I	CTNAG	4 cut(s)	411, 614, 824, 1020
Kzo9I	GATC	4 cut(s)	523, 610, 1171, 1554
LmnI	GCTCC	3 cut(s)	464, 958, 1296
Lsp1109I	GCAGC	3 cut(s)	286, 303, 1478
LweI	GCATC	2 cut(s)	73, 1418
MaeIII	GTNAC	2 cut(s)	1109, 1357
MalI	GATC	4 cut(s)	525, 612, 1173, 1556
MboI	GATC	4 cut(s)	523, 610, 1171, 1554
MfeI	CAATTG	1 cut(s)	1397
MflI	RGATCY	1 cut(s)	523
MhlI	GDGCHC	3 cut(s)	461, 963, 1515
MlyI	GAGTC	1 cut(s)	1328
MmeI	TCCRAC	1 cut(s)	953
MnlI	CCTC	9 cut(s)	330, 423, 574, 753, 756, 945, 1057, 1326, 1346
Mph1103I	ATGCAT	1 cut(s)	221
MroXI	GAANNNNTTC	1 cut(s)	782
MseI	TTAA	4 cut(s)	701, 744, 750, 1167
MslI	CAYNNNNRTG	2 cut(s)	999, 1417
MspI	CCGG	1 cut(s)	36
MspR9I	CCNGG	3 cut(s)	36, 48, 1221
MunI	CAATTG	1 cut(s)	1397
Mva1269I	GAATGC	1 cut(s)	1291
MvaI	CCWGG	2 cut(s)	48, 1221
MwoI	GCNNNNNNNGC	1 cut(s)	1466
NciI	CCSGG	1 cut(s)	36
NdeI	CATATG	1 cut(s)	685
NdeII	GATC	4 cut(s)	523, 610, 1171, 1554
NlaIV	GGNNCC	3 cut(s)	9, 810, 1298
NsiI	ATGCAT	1 cut(s)	221
NspI	RCATGY	5 cut(s)	97, 878, 1416, 1422, 1460
PaeI	GCATGC	1 cut(s)	878
PagI	TCATGA	1 cut(s)	1201
PceI	AGGCCT	1 cut(s)	340
PciI	ACATGT	1 cut(s)	1418
PcsI	WCGNNNNNNNCGW	1 cut(s)	543
PctI	GAATGC	1 cut(s)	1291
PdmI	GAANNNNTTC	1 cut(s)	782
PfeI	GAWTC	2 cut(s)	444, 497
PflMI	CCANNNNNTGG	1 cut(s)	53
PkrI	GCNGC	3 cut(s)	276, 318, 1468
PleI	GAGTC	1 cut(s)	1327
PpsI	GAGTC	1 cut(s)	1327
PscI	ACATGT	1 cut(s)	1418
Psp6I	CCWGG	2 cut(s)	46, 1219
PspEI	GGTNACC	1 cut(s)	1109
PspFI	CCCAGC	1 cut(s)	1568
PspGI	CCWGG	2 cut(s)	46, 1219
PspN4I	GGNNCC	3 cut(s)	9, 810, 1298
PspPI	GGNCC	6 cut(s)	8, 251, 296, 809, 1256, 1488
PstNI	CAGNNNCTG	1 cut(s)	53
PsuI	RGATCY	1 cut(s)	523
RsaI	GTAC	3 cut(s)	508, 585, 1417
RsaNI	GTAC	3 cut(s)	507, 584, 1416
RseI	CAYNNNNRTG	2 cut(s)	999, 1417
SalI	GTCGAC	1 cut(s)	545
SaqAI	TTAA	4 cut(s)	701, 744, 750, 1167
SatI	GCNGC	3 cut(s)	275, 317, 1467
Sau3AI	GATC	4 cut(s)	523, 610, 1171, 1554
Sau96I	GGNCC	6 cut(s)	8, 251, 296, 809, 1256, 1488
SchI	GAGTC	1 cut(s)	1328
ScrFI	CCNGG	3 cut(s)	36, 48, 1221
SduI	GDGCHC	3 cut(s)	461, 963, 1515
SfaNI	GCATC	2 cut(s)	73, 1418
SfcI	CTRYAG	2 cut(s)	540, 1563
SinI	GGWCC	4 cut(s)	8, 296, 1256, 1488
SmiMI	CAYNNNNRTG	2 cut(s)	999, 1417
SmlI	CTYRAG	2 cut(s)	468, 1155
SmoI	CTYRAG	2 cut(s)	468, 1155
SphI	GCATGC	1 cut(s)	878
SseBI	AGGCCT	1 cut(s)	340
SsiI	CCGC	2 cut(s)	80, 1491
StuI	AGGCCT	1 cut(s)	340
StyD4I	CCNGG	3 cut(s)	34, 46, 1219
StyI	CCWWGG	3 cut(s)	173, 1259, 1550
TaaI	ACNGT	4 cut(s)	380, 934, 998, 1081
TaqI	TCGA	3 cut(s)	28, 546, 1575
TatI	WGTACW	2 cut(s)	506, 1415
TfiI	GAWTC	2 cut(s)	444, 497
Tru1I	TTAA	4 cut(s)	701, 744, 750, 1167
Tru9I	TTAA	4 cut(s)	701, 744, 750, 1167
TscAI	CASTG	2 cut(s)	385, 1001
TseI	GCWGC	3 cut(s)	274, 316, 1466
TspDTI	ATGAA	8 cut(s)	94, 281, 510, 573, 585, 818, 1000, 1115
TspGWI	ACGGA	1 cut(s)	883
TspRI	CASTG	2 cut(s)	385, 1001
Van91I	CCANNNNNTGG	1 cut(s)	53
VpaK11BI	GGWCC	4 cut(s)	8, 296, 1256, 1488
XapI	RAATTY	1 cut(s)	561
XceI	RCATGY	5 cut(s)	97, 878, 1416, 1422, 1460
XcmI	CCANNNNNNNNNTGG	1 cut(s)	18
XmiI	GTMKAC	1 cut(s)	546
XmnI	GAANNNNTTC	1 cut(s)	782
Zsp2I	ATGCAT	1 cut(s)	221

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.