Rroxscaffold_5G00341090

No description available

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000005
Physical Location & Seq
Reverse (-)
9613296 .. 9613523
228 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_5G00341090.1

Sequence Viewer

Length: 228 bp
ATGGAAACCTCAAATGTGAGAGCTAAAATCCCAAATCAGTGTACTGGAGCCCTACCTGAGAACTTGGGTATGCATGTCAATGTGAACTTAAATTTGAATGTGAATGGGGGAAGTGATAATGTGATAAATGTTCCAATTGATCCTTTGCCATCTTTGACTGTCCAAGTCCCCACTATTAATGCTGCAGATGATAATTTGCAGAATTTGCAAATGCAAAATGGGAATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

75

Amino Acids

7.98

Weight (kDa)

4.23

Isoelectric Point (pI)

33.27

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 1 cut(s) 134
AcsI RAATTY 2 cut(s) 91, 202
AfaI GTAC 1 cut(s) 43
AgsI TTSAA 1 cut(s) 97
AluBI AGCT 1 cut(s) 23
AluI AGCT 1 cut(s) 23
AlwI GGATC 1 cut(s) 134
ApeKI GCWGC 1 cut(s) 182
ApoI RAATTY 2 cut(s) 91, 202
AseI ATTAAT 1 cut(s) 177
BanII GRGCYC 1 cut(s) 52
BbvI GCAGC 1 cut(s) 169
BccI CCATC 1 cut(s) 157
BfmI CTRYAG 1 cut(s) 183
BisI GCNGC 1 cut(s) 183
BlsI GCNGC 1 cut(s) 184
BmiI GGNNCC 1 cut(s) 49
BpmI CTGGAG 1 cut(s) 66
Bse1I ACTGG 1 cut(s) 49
BseMII CTCAG 1 cut(s) 48
BseNI ACTGG 1 cut(s) 49
BseXI GCAGC 1 cut(s) 169
BslFI GGGAC 1 cut(s) 152
BsmFI GGGAC 1 cut(s) 152
Bsp1286I GDGCHC 1 cut(s) 52
Bsp143I GATC 1 cut(s) 139
BspCNI CTCAG 1 cut(s) 49
BspLI GGNNCC 1 cut(s) 49
BspMAI CTGCAG 1 cut(s) 187
BspPI GGATC 1 cut(s) 134
BsrI ACTGG 1 cut(s) 49
BssMI GATC 1 cut(s) 139
Bst4CI ACNGT 1 cut(s) 160
BstAPI GCANNNNNTGC 1 cut(s) 205
BstDEI CTNAG 1 cut(s) 57
BstKTI GATC 1 cut(s) 142
BstMBI GATC 1 cut(s) 139
BstMWI GCNNNNNNNGC 1 cut(s) 205
BstNSI RCATGY 1 cut(s) 77
BstSFI CTRYAG 1 cut(s) 183
BstV1I GCAGC 1 cut(s) 169
BtsIMutI CAGTG 1 cut(s) 44
Csp6I GTAC 1 cut(s) 42
CviAII CATG 1 cut(s) 74
CviJI RGCY 2 cut(s) 23, 50
CviKI_1 RGCY 2 cut(s) 23, 50
CviQI GTAC 1 cut(s) 42
DdeI CTNAG 1 cut(s) 57
DpnI GATC 1 cut(s) 141
DpnII GATC 1 cut(s) 139
Eco24I GRGCYC 1 cut(s) 52
EcoT22I ATGCAT 1 cut(s) 75
EcoT38I GRGCYC 1 cut(s) 52
FaeI CATG 1 cut(s) 77
FaiI YATR 2 cut(s) 71, 75
FaqI GGGAC 1 cut(s) 152
FatI CATG 1 cut(s) 73
Fnu4HI GCNGC 1 cut(s) 183
FriOI GRGCYC 1 cut(s) 52
Fsp4HI GCNGC 1 cut(s) 183
GluI GCNGC 1 cut(s) 183
GsuI CTGGAG 1 cut(s) 66
Hin1II CATG 1 cut(s) 77
Hpy166II GTNNAC 2 cut(s) 42, 85
Hpy8I GTNNAC 2 cut(s) 42, 85
HpyCH4III ACNGT 1 cut(s) 160
HpyCH4V TGCA 5 cut(s) 73, 185, 199, 208, 214
HpyF10VI GCNNNNNNNGC 1 cut(s) 205
HpyF3I CTNAG 1 cut(s) 57
Hsp92II CATG 1 cut(s) 77
Kzo9I GATC 1 cut(s) 139
LmnI GCTCC 1 cut(s) 47
LpnPI CCDG 2 cut(s) 30, 69
Lsp1109I GCAGC 1 cut(s) 169
MalI GATC 1 cut(s) 141
MboI GATC 1 cut(s) 139
MfeI CAATTG 1 cut(s) 135
MhlI GDGCHC 1 cut(s) 52
MluCI AATT 5 cut(s) 91, 135, 193, 202, 223
MnlI CCTC 1 cut(s) 19
Mph1103I ATGCAT 1 cut(s) 75
MseI TTAA 2 cut(s) 89, 177
MslI CAYNNNNRTG 1 cut(s) 78
MunI CAATTG 1 cut(s) 135
MwoI GCNNNNNNNGC 1 cut(s) 205
NdeII GATC 1 cut(s) 139
NlaIII CATG 1 cut(s) 77
NlaIV GGNNCC 1 cut(s) 49
NsiI ATGCAT 1 cut(s) 75
NspI RCATGY 1 cut(s) 77
PkrI GCNGC 1 cut(s) 184
PshBI ATTAAT 1 cut(s) 177
PspN4I GGNNCC 1 cut(s) 49
PstI CTGCAG 1 cut(s) 187
RsaI GTAC 1 cut(s) 43
RsaNI GTAC 1 cut(s) 42
RseI CAYNNNNRTG 1 cut(s) 78
SaqAI TTAA 2 cut(s) 89, 177
SatI GCNGC 1 cut(s) 183
Sau3AI GATC 1 cut(s) 139
SduI GDGCHC 1 cut(s) 52
SetI ASST 3 cut(s) 11, 25, 58
SfcI CTRYAG 1 cut(s) 183
SgeI CNNG 5 cut(s) 57, 68, 76, 86, 176
SmiMI CAYNNNNRTG 1 cut(s) 78
Sse9I AATT 5 cut(s) 91, 135, 193, 202, 223
TaaI ACNGT 1 cut(s) 160
TasI AATT 5 cut(s) 91, 135, 193, 202, 223
TatI WGTACW 1 cut(s) 41
Tru1I TTAA 2 cut(s) 89, 177
Tru9I TTAA 2 cut(s) 89, 177
TscAI CASTG 1 cut(s) 44
TseI GCWGC 1 cut(s) 182
TspRI CASTG 1 cut(s) 44
VspI ATTAAT 1 cut(s) 177
XapI RAATTY 2 cut(s) 91, 202
XceI RCATGY 1 cut(s) 77
Zsp2I ATGCAT 1 cut(s) 75
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.