Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr2

Orthogroup ID

OG0014859

Physical Location & Seq

Genomic Coordinates Forward (+)

54497592 .. 54498221

Gene Structure 630 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000009556

Sequence Viewer

CDS Protein Promoter (2k)

Length: 522 bp

ATGGAAACCTCAAATGTGAGAGCTGAAATCCCAAGTCAGAGTACTGGAGCCCCACCTGAGAACTTGGGGATGACTATCAATGTGAACTTAAATTTGAAAGTGAATGGGGGAAGTGATAATGTGATAAATGTTCTAATTGATCCTTTGCCATCTTTGACTGTCCAAGTCCCCACTATTAATGCTGCAGATGATAATTTGCAGAATCTGCAAATGCAAAATGGGAATTTGATAAATGTTCCAATTGATCCTTTGCCATCTTTGACTGTCCAAGTTCCCTCCATGTGCCTTAATGCTCGAGATGATAATTTGCAGAATCTGCAAATGCAAAATGGGAATTTGGTTGAATCAAATCAGGTACATGTAAAACCAGTCTCAATATCCATAGTCAAGTCTACCACTAAAATCAGTGAAGCAAGAAGGTTGAAGACACTTGCAAATAGGATTAAAATCATTAAACCCTTTAACAAACCAGGAGCAACTAACATTGGCACAAGCAAAAAAATGAAGATGGAGAAAAACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

174

Amino Acids

18.77

Weight (kDa)

9.37

Isoelectric Point (pI)

37.34

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Tree File

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Orthologous Genes (Group: OG0014859)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr6g0303401
rosa_laevigata	RLG00000009556 RLG00000019103 RLG00000023233
rosa_multiflora	Rmu_sc0000211.1_g000002 Rmu_sc0000250.1_g000012
rosa_roxburghii	Rroxscaffold_3G00252420 Rroxscaffold_5G00341090
rosa_rugosa	Rorug01G0086700 Rorug01G0086900 Rorug03G0350800
rosa_samantha	Rh1AG415700 Rh3DG110600 Rh4BG066000 Rh4CG072600 Rh4DG062900 Rh4DG429700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	392
AclWI	GGATC	2 cut(s)	134, 239
AcsI	RAATTY	3 cut(s)	91, 223, 334
AfaI	GTAC	2 cut(s)	43, 357
AflIII	ACRYGT	1 cut(s)	358
AgsI	TTSAA	3 cut(s)	97, 344, 424
AjnI	CCWGG	1 cut(s)	469
AluBI	AGCT	1 cut(s)	23
AluI	AGCT	1 cut(s)	23
Alw26I	GTCTC	1 cut(s)	376
AlwI	GGATC	2 cut(s)	134, 239
AlwNI	CAGNNNCTG	2 cut(s)	205, 316
Ama87I	CYCGRG	1 cut(s)	294
ApeKI	GCWGC	1 cut(s)	182
ApoI	RAATTY	3 cut(s)	91, 223, 334
AseI	ATTAAT	1 cut(s)	177
AvaI	CYCGRG	1 cut(s)	294
BanII	GRGCYC	1 cut(s)	52
BbsI	GAAGAC	1 cut(s)	431
BbvI	GCAGC	1 cut(s)	169
BccI	CCATC	3 cut(s)	157, 262, 502
BciT130I	CCWGG	1 cut(s)	471
BcoDI	GTCTC	1 cut(s)	376
BfaI	CTAG	1 cut(s)	520
BfmI	CTRYAG	1 cut(s)	183
BisI	GCNGC	1 cut(s)	183
BlsI	GCNGC	1 cut(s)	184
BmcAI	AGTACT	1 cut(s)	43
Bme1390I	CCNGG	1 cut(s)	471
BmeT110I	CYCGRG	1 cut(s)	294
BmiI	GGNNCC	1 cut(s)	49
BmrFI	CCNGG	1 cut(s)	471
BpiI	GAAGAC	1 cut(s)	431
BpmI	CTGGAG	1 cut(s)	66
BsaBI	GATNNNNATC	2 cut(s)	74, 446
Bse1I	ACTGG	2 cut(s)	49, 368
Bse8I	GATNNNNATC	2 cut(s)	74, 446
BseBI	CCWGG	1 cut(s)	471
BseGI	GGATG	1 cut(s)	75
BseJI	GATNNNNATC	2 cut(s)	74, 446
BseMII	CTCAG	1 cut(s)	48
BseNI	ACTGG	2 cut(s)	49, 368
BseXI	GCAGC	1 cut(s)	169
BsiHKCI	CYCGRG	1 cut(s)	294
BslFI	GGGAC	1 cut(s)	152
BsmAI	GTCTC	1 cut(s)	376
BsmFI	GGGAC	1 cut(s)	152
BsoBI	CYCGRG	1 cut(s)	294
Bsp1286I	GDGCHC	1 cut(s)	52
Bsp143I	GATC	2 cut(s)	139, 244
BspCNI	CTCAG	1 cut(s)	49
BspLI	GGNNCC	1 cut(s)	49
BspMAI	CTGCAG	1 cut(s)	187
BspPI	GGATC	2 cut(s)	134, 239
BsrI	ACTGG	2 cut(s)	49, 368
BssMI	GATC	2 cut(s)	139, 244
Bst2UI	CCWGG	1 cut(s)	471
Bst4CI	ACNGT	2 cut(s)	160, 265
BstAPI	GCANNNNNTGC	2 cut(s)	205, 316
BstDEI	CTNAG	1 cut(s)	57
BstF5I	GGATG	1 cut(s)	75
BstKTI	GATC	2 cut(s)	142, 247
BstMAI	GTCTC	1 cut(s)	376
BstMBI	GATC	2 cut(s)	139, 244
BstMWI	GCNNNNNNNGC	2 cut(s)	205, 316
BstNI	CCWGG	1 cut(s)	471
BstNSI	RCATGY	1 cut(s)	362
BstSCI	CCNGG	1 cut(s)	469
BstSFI	CTRYAG	1 cut(s)	183
BstV1I	GCAGC	1 cut(s)	169
BstV2I	GAAGAC	1 cut(s)	431
BtsCI	GGATG	1 cut(s)	75
BtsIMutI	CAGTG	1 cut(s)	412
CaiI	CAGNNNCTG	2 cut(s)	205, 316
Csp6I	GTAC	2 cut(s)	42, 356
CviAII	CATG	2 cut(s)	280, 359
CviJI	RGCY	2 cut(s)	23, 50
CviKI_1	RGCY	2 cut(s)	23, 50
CviQI	GTAC	2 cut(s)	42, 356
DdeI	CTNAG	1 cut(s)	57
DpnI	GATC	2 cut(s)	141, 246
DpnII	GATC	2 cut(s)	139, 244
Eco24I	GRGCYC	1 cut(s)	52
Eco88I	CYCGRG	1 cut(s)	294
EcoRII	CCWGG	1 cut(s)	469
EcoT38I	GRGCYC	1 cut(s)	52
FaeI	CATG	2 cut(s)	283, 362
FaiI	YATR	3 cut(s)	281, 360, 383
FaqI	GGGAC	1 cut(s)	152
FatI	CATG	2 cut(s)	279, 358
FblI	GTMKAC	1 cut(s)	392
Fnu4HI	GCNGC	1 cut(s)	183
FokI	GGATG	1 cut(s)	82
FriOI	GRGCYC	1 cut(s)	52
Fsp4HI	GCNGC	1 cut(s)	183
FspBI	CTAG	1 cut(s)	520
GluI	GCNGC	1 cut(s)	183
GsuI	CTGGAG	1 cut(s)	66
Hin1II	CATG	2 cut(s)	283, 362
HinfI	GANTC	3 cut(s)	202, 313, 344
Hpy166II	GTNNAC	2 cut(s)	85, 393
Hpy188I	TCNGA	1 cut(s)	39
Hpy188III	TCNNGA	1 cut(s)	296
Hpy8I	GTNNAC	2 cut(s)	85, 393
HpyAV	CCTTC	1 cut(s)	411
HpyCH4III	ACNGT	2 cut(s)	160, 265
HpyCH4V	TGCA	8 cut(s)	185, 199, 208, 214, 310, 319, 325, 434
HpyF10VI	GCNNNNNNNGC	2 cut(s)	205, 316
HpyF3I	CTNAG	1 cut(s)	57
Hsp92II	CATG	2 cut(s)	283, 362
Kzo9I	GATC	2 cut(s)	139, 244
LmnI	GCTCC	2 cut(s)	47, 473
LpnPI	CCDG	6 cut(s)	30, 69, 338, 381, 456, 483
Lsp1109I	GCAGC	1 cut(s)	169
MaeI	CTAG	1 cut(s)	520
MalI	GATC	2 cut(s)	141, 246
MboI	GATC	2 cut(s)	139, 244
MboII	GAAGA	2 cut(s)	436, 517
MfeI	CAATTG	1 cut(s)	240
MhlI	GDGCHC	1 cut(s)	52
MluCI	AATT	7 cut(s)	91, 135, 193, 223, 240, 304, 334
MnlI	CCTC	2 cut(s)	19, 286
MseI	TTAA	6 cut(s)	89, 177, 288, 444, 453, 462
MspR9I	CCNGG	1 cut(s)	471
MunI	CAATTG	1 cut(s)	240
MvaI	CCWGG	1 cut(s)	471
MwoI	GCNNNNNNNGC	2 cut(s)	205, 316
NdeII	GATC	2 cut(s)	139, 244
NlaIII	CATG	2 cut(s)	283, 362
NlaIV	GGNNCC	1 cut(s)	49
NspI	RCATGY	1 cut(s)	362
PaeR7I	CTCGAG	1 cut(s)	294
PciI	ACATGT	1 cut(s)	358
PfeI	GAWTC	3 cut(s)	202, 313, 344
PkrI	GCNGC	1 cut(s)	184
PscI	ACATGT	1 cut(s)	358
PshBI	ATTAAT	1 cut(s)	177
Psp6I	CCWGG	1 cut(s)	469
PspGI	CCWGG	1 cut(s)	469
PspN4I	GGNNCC	1 cut(s)	49
PstI	CTGCAG	1 cut(s)	187
PstNI	CAGNNNCTG	2 cut(s)	205, 316
RsaI	GTAC	2 cut(s)	43, 357
RsaNI	GTAC	2 cut(s)	42, 356
SaqAI	TTAA	6 cut(s)	89, 177, 288, 444, 453, 462
SatI	GCNGC	1 cut(s)	183
Sau3AI	GATC	2 cut(s)	139, 244
ScaI	AGTACT	1 cut(s)	43
ScrFI	CCNGG	1 cut(s)	471
SduI	GDGCHC	1 cut(s)	52
SetI	ASST	5 cut(s)	11, 25, 58, 357, 422
SfcI	CTRYAG	1 cut(s)	183
Sfr274I	CTCGAG	1 cut(s)	294
SlaI	CTCGAG	1 cut(s)	294
SmlI	CTYRAG	1 cut(s)	294
SmoI	CTYRAG	1 cut(s)	294
Sse9I	AATT	7 cut(s)	91, 135, 193, 223, 240, 304, 334
SspMI	CTAG	1 cut(s)	520
StyD4I	CCNGG	1 cut(s)	469
TaaI	ACNGT	2 cut(s)	160, 265
TaqI	TCGA	1 cut(s)	295
TasI	AATT	7 cut(s)	91, 135, 193, 223, 240, 304, 334
TatI	WGTACW	1 cut(s)	41
TfiI	GAWTC	3 cut(s)	202, 313, 344
Tru1I	TTAA	6 cut(s)	89, 177, 288, 444, 453, 462
Tru9I	TTAA	6 cut(s)	89, 177, 288, 444, 453, 462
TscAI	CASTG	1 cut(s)	412
TseI	GCWGC	1 cut(s)	182
TspDTI	ATGAA	1 cut(s)	518
TspRI	CASTG	1 cut(s)	412
VspI	ATTAAT	1 cut(s)	177
XapI	RAATTY	3 cut(s)	91, 223, 334
XceI	RCATGY	1 cut(s)	362
XhoI	CTCGAG	1 cut(s)	294
XmiI	GTMKAC	1 cut(s)	392
XspI	CTAG	1 cut(s)	520
ZrmI	AGTACT	1 cut(s)	43

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.