Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr4

Orthogroup ID

OG0014859

Physical Location & Seq

Genomic Coordinates Forward (+)

46457063 .. 46458241

Gene Structure 1179 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000019103

Sequence Viewer

CDS Protein Promoter (2k)

Length: 417 bp

ATGGCCAATTATTGGAGATACTTTAGACTTGATGGGGACCCAATAAGACAAGAAGTAAATCATGGAGGGGGTTTTATAGCCAAAGATGGTATAAATAGACAGTACAGAGGTGGAAATGTTGTTTTGGTGGATAAGGTTGACCGATCTAAATTGGGATTCAATGGCTTTAATTACTGGGTGAACGATTTAGCGGGCTTATTAATTGTTCTGGTGCTATTATACAATGTGAAGGTGGATGTGAAATCAGTCTCAATGTCTACTGCCAAGTCTACTGGTAAAGTTGATCAAGCAACAGGGTTGAAGTCACCTGCAAATAGGATTAAACCTGTCAAGAAACCAAGAGCAACTAATATTGGCACATGCACTAAGAATGGAGATGAAGCAAAACCAGGAGCCCACAAGCCATGGAAGTACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

139

Amino Acids

15.3

Weight (kDa)

9.96

Isoelectric Point (pI)

9.91

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

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Tree File

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Publication-ready

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Orthologous Genes (Group: OG0014859)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr6g0303401
rosa_laevigata	RLG00000009556 RLG00000019103 RLG00000023233
rosa_multiflora	Rmu_sc0000211.1_g000002 Rmu_sc0000250.1_g000012
rosa_roxburghii	Rroxscaffold_3G00252420 Rroxscaffold_5G00341090
rosa_rugosa	Rorug01G0086700 Rorug01G0086900 Rorug03G0350800
rosa_samantha	Rh1AG415700 Rh3DG110600 Rh4BG066000 Rh4CG072600 Rh4DG062900 Rh4DG429700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	316
Acc36I	ACCTGC	1 cut(s)	316
AccB7I	CCANNNNNTGG	1 cut(s)	12
AccI	GTMKAC	2 cut(s)	257, 269
AciI	CCGC	1 cut(s)	191
AcoI	YGGCCR	1 cut(s)	3
AfaI	GTAC	2 cut(s)	104, 413
AfiI	CCNNNNNNNGG	1 cut(s)	12
AgsI	TTSAA	2 cut(s)	160, 301
AjnI	CCWGG	1 cut(s)	388
Alw26I	GTCTC	1 cut(s)	253
AoxI	GGCC	1 cut(s)	3
AseI	ATTAAT	1 cut(s)	200
AspS9I	GGNCC	1 cut(s)	37
AsuHPI	GGTGA	2 cut(s)	190, 297
AvaII	GGWCC	1 cut(s)	37
BalI	TGGCCA	1 cut(s)	5
BanII	GRGCYC	1 cut(s)	397
BccI	CCATC	2 cut(s)	26, 80
BciT130I	CCWGG	1 cut(s)	390
BclI	TGATCA	1 cut(s)	283
BcoDI	GTCTC	1 cut(s)	253
BfuAI	ACCTGC	1 cut(s)	316
BmcAI	AGTACT	1 cut(s)	413
Bme1390I	CCNGG	1 cut(s)	390
Bme18I	GGWCC	1 cut(s)	37
BmgT120I	GGNCC	1 cut(s)	37
BmiI	GGNNCC	3 cut(s)	38, 39, 394
BmrFI	CCNGG	1 cut(s)	390
BmrI	ACTGGG	1 cut(s)	184
BmuI	ACTGGG	1 cut(s)	184
BsaJI	CCNNGG	1 cut(s)	404
Bsc4I	CCNNNNNNNGG	1 cut(s)	12
Bse1I	ACTGG	2 cut(s)	179, 277
BseBI	CCWGG	1 cut(s)	390
BseDI	CCNNGG	1 cut(s)	404
BseGI	GGATG	1 cut(s)	241
BseLI	CCNNNNNNNGG	1 cut(s)	12
BseNI	ACTGG	2 cut(s)	179, 277
BshFI	GGCC	1 cut(s)	5
BslFI	GGGAC	1 cut(s)	50
BslI	CCNNNNNNNGG	1 cut(s)	12
BsmAI	GTCTC	1 cut(s)	253
BsmFI	GGGAC	1 cut(s)	50
BsnI	GGCC	1 cut(s)	5
Bsp1286I	GDGCHC	1 cut(s)	397
Bsp143I	GATC	2 cut(s)	143, 283
Bsp19I	CCATGG	1 cut(s)	404
BspACI	CCGC	1 cut(s)	191
BspANI	GGCC	1 cut(s)	5
BspLI	GGNNCC	3 cut(s)	38, 39, 394
BspMI	ACCTGC	1 cut(s)	316
BsrI	ACTGG	2 cut(s)	179, 277
BssECI	CCNNGG	1 cut(s)	404
BssMI	GATC	2 cut(s)	143, 283
BssT1I	CCWWGG	1 cut(s)	404
Bst2UI	CCWGG	1 cut(s)	390
Bst4CI	ACNGT	1 cut(s)	102
BstC8I	GCNNGC	1 cut(s)	193
BstDEI	CTNAG	1 cut(s)	366
BstDSI	CCRYGG	1 cut(s)	404
BstF5I	GGATG	1 cut(s)	241
BstKTI	GATC	2 cut(s)	146, 286
BstMAI	GTCTC	1 cut(s)	253
BstMBI	GATC	2 cut(s)	143, 283
BstNI	CCWGG	1 cut(s)	390
BstNSI	RCATGY	1 cut(s)	363
BstSCI	CCNGG	1 cut(s)	388
BsuRI	GGCC	1 cut(s)	5
BtgI	CCRYGG	1 cut(s)	404
BtsCI	GGATG	1 cut(s)	241
BveI	ACCTGC	1 cut(s)	316
Cac8I	GCNNGC	1 cut(s)	193
Cfr13I	GGNCC	1 cut(s)	37
Csp6I	GTAC	2 cut(s)	103, 412
CviAII	CATG	3 cut(s)	62, 360, 405
CviJI	RGCY	6 cut(s)	5, 80, 165, 195, 395, 403
CviKI_1	RGCY	6 cut(s)	5, 80, 165, 195, 395, 403
CviQI	GTAC	2 cut(s)	103, 412
DdeI	CTNAG	1 cut(s)	366
DpnI	GATC	2 cut(s)	145, 285
DpnII	GATC	2 cut(s)	143, 283
EaeI	YGGCCR	1 cut(s)	3
Eco130I	CCWWGG	1 cut(s)	404
Eco24I	GRGCYC	1 cut(s)	397
Eco47I	GGWCC	1 cut(s)	37
EcoO109I	RGGNCCY	1 cut(s)	37
EcoRII	CCWGG	1 cut(s)	388
EcoT14I	CCWWGG	1 cut(s)	404
EcoT38I	GRGCYC	1 cut(s)	397
ErhI	CCWWGG	1 cut(s)	404
FaeI	CATG	3 cut(s)	65, 363, 408
FaiI	YATR	6 cut(s)	63, 77, 92, 220, 361, 406
FaqI	GGGAC	1 cut(s)	50
FatI	CATG	3 cut(s)	61, 359, 404
FauI	CCCGC	1 cut(s)	184
FbaI	TGATCA	1 cut(s)	283
FblI	GTMKAC	2 cut(s)	257, 269
FokI	GGATG	1 cut(s)	248
FriOI	GRGCYC	1 cut(s)	397
HaeIII	GGCC	1 cut(s)	5
Hin1II	CATG	3 cut(s)	65, 363, 408
HincII	GTYRAC	1 cut(s)	139
HindII	GTYRAC	1 cut(s)	139
HinfI	GANTC	1 cut(s)	156
HphI	GGTGA	2 cut(s)	190, 297
Hpy166II	GTNNAC	4 cut(s)	139, 181, 258, 270
Hpy188III	TCNNGA	1 cut(s)	331
Hpy8I	GTNNAC	4 cut(s)	139, 181, 258, 270
HpyAV	CCTTC	1 cut(s)	223
HpyCH4III	ACNGT	1 cut(s)	102
HpyCH4V	TGCA	2 cut(s)	311, 363
HpyF3I	CTNAG	1 cut(s)	366
Hsp92II	CATG	3 cut(s)	65, 363, 408
KflI	GGGWCCC	1 cut(s)	37
Ksp22I	TGATCA	1 cut(s)	283
Kzo9I	GATC	2 cut(s)	143, 283
LmnI	GCTCC	1 cut(s)	392
LpnPI	CCDG	8 cut(s)	160, 194, 258, 279, 321, 339, 375, 402
MaeIII	GTNAC	1 cut(s)	303
MalI	GATC	2 cut(s)	145, 285
MboI	GATC	2 cut(s)	143, 283
MhlI	GDGCHC	1 cut(s)	397
MlsI	TGGCCA	1 cut(s)	5
MluCI	AATT	4 cut(s)	7, 149, 169, 201
MluNI	TGGCCA	1 cut(s)	5
MnlI	CCTC	2 cut(s)	59, 101
Mox20I	TGGCCA	1 cut(s)	5
MscI	TGGCCA	1 cut(s)	5
MseI	TTAA	3 cut(s)	168, 200, 321
Msp20I	TGGCCA	1 cut(s)	5
MspR9I	CCNGG	1 cut(s)	390
MvaI	CCWGG	1 cut(s)	390
NcoI	CCATGG	1 cut(s)	404
NdeII	GATC	2 cut(s)	143, 283
NlaIII	CATG	3 cut(s)	65, 363, 408
NlaIV	GGNNCC	3 cut(s)	38, 39, 394
NmuCI	GTSAC	1 cut(s)	303
NspI	RCATGY	1 cut(s)	363
PaqCI	CACCTGC	1 cut(s)	316
PfeI	GAWTC	1 cut(s)	156
PflMI	CCANNNNNTGG	1 cut(s)	12
PpuMI	RGGWCCY	1 cut(s)	37
PshBI	ATTAAT	1 cut(s)	200
Psp5II	RGGWCCY	1 cut(s)	37
Psp6I	CCWGG	1 cut(s)	388
PspGI	CCWGG	1 cut(s)	388
PspN4I	GGNNCC	3 cut(s)	38, 39, 394
PspPI	GGNCC	1 cut(s)	37
PspPPI	RGGWCCY	1 cut(s)	37
RsaI	GTAC	2 cut(s)	104, 413
RsaNI	GTAC	2 cut(s)	103, 412
SaqAI	TTAA	3 cut(s)	168, 200, 321
Sau3AI	GATC	2 cut(s)	143, 283
Sau96I	GGNCC	1 cut(s)	37
ScaI	AGTACT	1 cut(s)	413
ScrFI	CCNGG	1 cut(s)	390
SduI	GDGCHC	1 cut(s)	397
SetI	ASST	5 cut(s)	112, 138, 234, 310, 328
SinI	GGWCC	1 cut(s)	37
Sse9I	AATT	4 cut(s)	7, 149, 169, 201
SsiI	CCGC	1 cut(s)	191
SspI	AATATT	1 cut(s)	352
StyD4I	CCNGG	1 cut(s)	388
StyI	CCWWGG	1 cut(s)	404
TaaI	ACNGT	1 cut(s)	102
TaqII	GACCGA	1 cut(s)	156
TasI	AATT	4 cut(s)	7, 149, 169, 201
TatI	WGTACW	2 cut(s)	102, 411
TfiI	GAWTC	1 cut(s)	156
Tru1I	TTAA	3 cut(s)	168, 200, 321
Tru9I	TTAA	3 cut(s)	168, 200, 321
TseFI	GTSAC	1 cut(s)	303
Tsp45I	GTSAC	1 cut(s)	303
TspDTI	ATGAA	1 cut(s)	393
Van91I	CCANNNNNTGG	1 cut(s)	12
VpaK11BI	GGWCC	1 cut(s)	37
VspI	ATTAAT	1 cut(s)	200
XceI	RCATGY	1 cut(s)	363
XmiI	GTMKAC	2 cut(s)	257, 269
ZrmI	AGTACT	1 cut(s)	413

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.