Rh1AG415700

No description available

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1A
Physical Location & Seq
Reverse (-)
64793448 .. 64796912
3465 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1AG415700.1

Sequence Viewer

Length: 291 bp
ATGGGCCATGTCATTAGCGATTTAGAAGATGAGCTAGATGCAATGATGAGTGAGCAGCAATTGGTAGGTGGAGATGGATTAACGCAAGCTGGTGAGTTGCAGCAAAGAAAGATGGGGCTTGGGAATGTGGATTCTATGATAATTGGTATGCAACAAGTGGAGCTTGATGGGCCAACACCCAAACAGATGCCAAAAGATAAAGGGAAGCAAAAGATGGTTGTTGAAGACAATGAGGTTCCAAGGAAAAAGAAAGGCAGACCTAAGAAAGATTTAAAAAGGAGGCACCTTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

96

Amino Acids

10.75

Weight (kDa)

7.99

Isoelectric Point (pI)

54.9

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 282
AgsI TTSAA 1 cut(s) 224
AluBI AGCT 3 cut(s) 34, 89, 163
AluI AGCT 3 cut(s) 34, 89, 163
AoxI GGCC 2 cut(s) 4, 170
ApeKI GCWGC 2 cut(s) 55, 100
AspS9I GGNCC 2 cut(s) 4, 170
AsuHPI GGTGA 1 cut(s) 104
BanI GGYRCC 1 cut(s) 282
BbsI GAAGAC 1 cut(s) 231
BbvI GCAGC 2 cut(s) 67, 112
BccI CCATC 4 cut(s) 68, 106, 161, 208
BfaI CTAG 1 cut(s) 35
BisI GCNGC 2 cut(s) 56, 101
BlsI GCNGC 2 cut(s) 57, 102
BmgT120I GGNCC 2 cut(s) 4, 170
BmiI GGNNCC 2 cut(s) 237, 284
BmsI GCATC 2 cut(s) 28, 177
BpiI GAAGAC 1 cut(s) 231
BsaJI CCNNGG 1 cut(s) 239
Bse3DI GCAATG 1 cut(s) 48
BseDI CCNNGG 1 cut(s) 239
BseMI GCAATG 1 cut(s) 48
BseXI GCAGC 2 cut(s) 67, 112
BshFI GGCC 2 cut(s) 6, 172
BshNI GGYRCC 1 cut(s) 282
BsnI GGCC 2 cut(s) 6, 172
BspANI GGCC 2 cut(s) 6, 172
BspLI GGNNCC 2 cut(s) 237, 284
BspT107I GGYRCC 1 cut(s) 282
BsrDI GCAATG 1 cut(s) 48
BssECI CCNNGG 1 cut(s) 239
BssT1I CCWWGG 1 cut(s) 239
BstC8I GCNNGC 1 cut(s) 87
BstDEI CTNAG 1 cut(s) 261
BstMWI GCNNNNNNNGC 1 cut(s) 169
BstV1I GCAGC 2 cut(s) 67, 112
BstV2I GAAGAC 1 cut(s) 231
BsuRI GGCC 2 cut(s) 6, 172
Cac8I GCNNGC 1 cut(s) 87
Cfr13I GGNCC 2 cut(s) 4, 170
CviAII CATG 1 cut(s) 8
CviJI RGCY 6 cut(s) 6, 34, 89, 118, 163, 172
CviKI_1 RGCY 6 cut(s) 6, 34, 89, 118, 163, 172
DdeI CTNAG 1 cut(s) 261
DraI TTTAAA 1 cut(s) 273
Eco130I CCWWGG 1 cut(s) 239
EcoT14I CCWWGG 1 cut(s) 239
ErhI CCWWGG 1 cut(s) 239
FaeI CATG 1 cut(s) 11
FaiI YATR 3 cut(s) 9, 137, 149
FalI AAGNNNNNCTT 2 cut(s) 147, 179
FatI CATG 1 cut(s) 7
Fnu4HI GCNGC 2 cut(s) 56, 101
Fsp4HI GCNGC 2 cut(s) 56, 101
FspBI CTAG 1 cut(s) 35
GluI GCNGC 2 cut(s) 56, 101
HaeIII GGCC 2 cut(s) 6, 172
Hin1II CATG 1 cut(s) 11
HinfI GANTC 1 cut(s) 131
HphI GGTGA 1 cut(s) 104
HpyCH4V TGCA 3 cut(s) 41, 100, 151
HpyF10VI GCNNNNNNNGC 1 cut(s) 169
HpyF3I CTNAG 1 cut(s) 261
Hsp92II CATG 1 cut(s) 11
LmnI GCTCC 1 cut(s) 160
LpnPI CCDG 1 cut(s) 75
Lsp1109I GCAGC 2 cut(s) 67, 112
LweI GCATC 2 cut(s) 28, 177
MaeI CTAG 1 cut(s) 35
MboII GAAGA 2 cut(s) 38, 236
MfeI CAATTG 1 cut(s) 59
MluCI AATT 2 cut(s) 59, 141
MnlI CCTC 2 cut(s) 226, 273
MseI TTAA 3 cut(s) 80, 272, 289
MunI CAATTG 1 cut(s) 59
MwoI GCNNNNNNNGC 1 cut(s) 169
NlaIII CATG 1 cut(s) 11
NlaIV GGNNCC 2 cut(s) 237, 284
PfeI GAWTC 1 cut(s) 131
PkrI GCNGC 2 cut(s) 57, 102
PspN4I GGNNCC 2 cut(s) 237, 284
PspPI GGNCC 2 cut(s) 4, 170
SaqAI TTAA 3 cut(s) 80, 272, 289
SatI GCNGC 2 cut(s) 56, 101
Sau96I GGNCC 2 cut(s) 4, 170
SetI ASST 7 cut(s) 36, 70, 91, 165, 237, 262, 288
SfaNI GCATC 2 cut(s) 28, 177
SgeI CNNG 8 cut(s) 20, 47, 98, 102, 131, 167, 176, 252
Sse9I AATT 2 cut(s) 59, 141
SspMI CTAG 1 cut(s) 35
StyI CCWWGG 1 cut(s) 239
TasI AATT 2 cut(s) 59, 141
TfiI GAWTC 1 cut(s) 131
Tru1I TTAA 3 cut(s) 80, 272, 289
Tru9I TTAA 3 cut(s) 80, 272, 289
TseI GCWGC 2 cut(s) 55, 100
XspI CTAG 1 cut(s) 35
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.