Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4D

Orthogroup ID

OG0014859

Physical Location & Seq

Genomic Coordinates Forward (+)

63443983 .. 63447190

Gene Structure 3208 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4DG429700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 459 bp

ATGGGCCATGTCATTAGCGATTTAGAAGATGAGCCAGAAGCAATGATGAGTGAGCAGCAATTGGTAGGTGGAGATGGACTAACGCAAGCTGGTGAGTTGCAACAAAGAAAGATGGGGCTTGAGAATGTGGATTCTTTGATAATTGTTCCCACTATTAATGCTGCAGCTGATAATTTGCAGAACCTACAAATGCAAAATTTGAATTTGGTTTATGCAAATCAGGTGCATGTGAAATCAGTCTCAATGTCTACAGCCAAGTCTACTGGTAAAGTTGGTCAAGCAACAGGGTTGAAGTCACCTGCAAATAGGATTAAACTAGTCAAGAAACCAGGAGCAACTAATATTGGCACATGCACTAAGAATAGAGATGGAGCAAAGGAGCCCACAAGCCATGGAAGTACTGATGCTTGGAGCAAACTTTTGACATTTTATGACATTCATGACCATTTGTTTCTATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

152

Amino Acids

16.39

Weight (kDa)

6.18

Isoelectric Point (pI)

38.65

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Image

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Publication-ready

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Orthologous Genes (Group: OG0014859)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr6g0303401
rosa_laevigata	RLG00000009556 RLG00000019103 RLG00000023233
rosa_multiflora	Rmu_sc0000211.1_g000002 Rmu_sc0000250.1_g000012
rosa_roxburghii	Rroxscaffold_3G00252420 Rroxscaffold_5G00341090
rosa_rugosa	Rorug01G0086700 Rorug01G0086900 Rorug03G0350800
rosa_samantha	Rh1AG415700 Rh3DG110600 Rh4BG066000 Rh4CG072600 Rh4DG062900 Rh4DG429700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	307
Acc36I	ACCTGC	1 cut(s)	307
AccI	GTMKAC	2 cut(s)	248, 260
AcsI	RAATTY	2 cut(s)	196, 202
AfaI	GTAC	1 cut(s)	400
AgsI	TTSAA	2 cut(s)	202, 292
AhlI	ACTAGT	1 cut(s)	316
AjnI	CCWGG	1 cut(s)	328
AluBI	AGCT	2 cut(s)	89, 167
AluI	AGCT	2 cut(s)	89, 167
Alw26I	GTCTC	1 cut(s)	244
AoxI	GGCC	1 cut(s)	4
ApeKI	GCWGC	3 cut(s)	55, 161, 164
ApoI	RAATTY	2 cut(s)	196, 202
AseI	ATTAAT	1 cut(s)	156
AspS9I	GGNCC	1 cut(s)	4
AsuHPI	GGTGA	2 cut(s)	104, 288
BanII	GRGCYC	1 cut(s)	384
BbvI	GCAGC	3 cut(s)	67, 148, 176
BccI	CCATC	3 cut(s)	68, 106, 362
BciT130I	CCWGG	1 cut(s)	330
BcoDI	GTCTC	1 cut(s)	244
BcuI	ACTAGT	1 cut(s)	316
BfaI	CTAG	1 cut(s)	317
BfmI	CTRYAG	2 cut(s)	162, 249
BfuAI	ACCTGC	1 cut(s)	307
BisI	GCNGC	3 cut(s)	56, 162, 165
BlsI	GCNGC	3 cut(s)	57, 163, 166
BmcAI	AGTACT	1 cut(s)	400
Bme1390I	CCNGG	1 cut(s)	330
BmgT120I	GGNCC	1 cut(s)	4
BmiI	GGNNCC	1 cut(s)	381
BmrFI	CCNGG	1 cut(s)	330
BmsI	GCATC	1 cut(s)	394
BpuEI	CTTGAG	1 cut(s)	140
BsaJI	CCNNGG	1 cut(s)	391
Bse1I	ACTGG	1 cut(s)	268
Bse3DI	GCAATG	1 cut(s)	48
BseBI	CCWGG	1 cut(s)	330
BseDI	CCNNGG	1 cut(s)	391
BseMI	GCAATG	1 cut(s)	48
BseNI	ACTGG	1 cut(s)	268
BseXI	GCAGC	3 cut(s)	67, 148, 176
BshFI	GGCC	1 cut(s)	6
BsmAI	GTCTC	1 cut(s)	244
BsnI	GGCC	1 cut(s)	6
Bsp1286I	GDGCHC	1 cut(s)	384
Bsp19I	CCATGG	1 cut(s)	391
BspANI	GGCC	1 cut(s)	6
BspHI	TCATGA	1 cut(s)	439
BspLI	GGNNCC	1 cut(s)	381
BspMAI	CTGCAG	1 cut(s)	166
BspMI	ACCTGC	1 cut(s)	307
BsrDI	GCAATG	1 cut(s)	48
BsrI	ACTGG	1 cut(s)	268
BssECI	CCNNGG	1 cut(s)	391
BssT1I	CCWWGG	1 cut(s)	391
Bst2UI	CCWGG	1 cut(s)	330
BstC8I	GCNNGC	1 cut(s)	87
BstDEI	CTNAG	1 cut(s)	357
BstDSI	CCRYGG	1 cut(s)	391
BstMAI	GTCTC	1 cut(s)	244
BstNI	CCWGG	1 cut(s)	330
BstNSI	RCATGY	2 cut(s)	230, 354
BstSCI	CCNGG	1 cut(s)	328
BstSFI	CTRYAG	2 cut(s)	162, 249
BstV1I	GCAGC	3 cut(s)	67, 148, 176
BsuRI	GGCC	1 cut(s)	6
BtgI	CCRYGG	1 cut(s)	391
BveI	ACCTGC	1 cut(s)	307
Cac8I	GCNNGC	1 cut(s)	87
CciI	TCATGA	1 cut(s)	439
Cfr13I	GGNCC	1 cut(s)	4
Csp6I	GTAC	1 cut(s)	399
CviAII	CATG	5 cut(s)	8, 227, 351, 392, 440
CviJI	RGCY	8 cut(s)	6, 34, 89, 118, 167, 254, 382, 390
CviKI_1	RGCY	8 cut(s)	6, 34, 89, 118, 167, 254, 382, 390
CviQI	GTAC	1 cut(s)	399
DdeI	CTNAG	1 cut(s)	357
Eco130I	CCWWGG	1 cut(s)	391
Eco24I	GRGCYC	1 cut(s)	384
EcoRII	CCWGG	1 cut(s)	328
EcoT14I	CCWWGG	1 cut(s)	391
EcoT38I	GRGCYC	1 cut(s)	384
ErhI	CCWWGG	1 cut(s)	391
FaeI	CATG	5 cut(s)	11, 230, 354, 395, 443
FaiI	YATR	8 cut(s)	9, 213, 228, 352, 393, 432, 441, 457
FatI	CATG	5 cut(s)	7, 226, 350, 391, 439
FblI	GTMKAC	2 cut(s)	248, 260
Fnu4HI	GCNGC	3 cut(s)	56, 162, 165
FriOI	GRGCYC	1 cut(s)	384
Fsp4HI	GCNGC	3 cut(s)	56, 162, 165
FspBI	CTAG	1 cut(s)	317
GluI	GCNGC	3 cut(s)	56, 162, 165
HaeIII	GGCC	1 cut(s)	6
Hin1II	CATG	5 cut(s)	11, 230, 354, 395, 443
HinfI	GANTC	1 cut(s)	131
HphI	GGTGA	2 cut(s)	104, 288
Hpy166II	GTNNAC	2 cut(s)	249, 261
Hpy188III	TCNNGA	2 cut(s)	322, 440
Hpy8I	GTNNAC	2 cut(s)	249, 261
HpyCH4V	TGCA	8 cut(s)	100, 164, 178, 193, 215, 226, 302, 354
HpyF3I	CTNAG	1 cut(s)	357
Hsp92II	CATG	5 cut(s)	11, 230, 354, 395, 443
LmnI	GCTCC	4 cut(s)	332, 371, 379, 411
LpnPI	CCDG	8 cut(s)	48, 75, 206, 249, 270, 312, 315, 342
Lsp1109I	GCAGC	3 cut(s)	67, 148, 176
LweI	GCATC	1 cut(s)	394
MaeI	CTAG	1 cut(s)	317
MaeIII	GTNAC	1 cut(s)	294
MboII	GAAGA	1 cut(s)	38
MfeI	CAATTG	1 cut(s)	59
MhlI	GDGCHC	1 cut(s)	384
MluCI	AATT	5 cut(s)	59, 141, 172, 196, 202
MseI	TTAA	2 cut(s)	156, 312
MspA1I	CMGCKG	1 cut(s)	167
MspR9I	CCNGG	1 cut(s)	330
MunI	CAATTG	1 cut(s)	59
MvaI	CCWGG	1 cut(s)	330
NcoI	CCATGG	1 cut(s)	391
NlaIII	CATG	5 cut(s)	11, 230, 354, 395, 443
NlaIV	GGNNCC	1 cut(s)	381
NmuCI	GTSAC	1 cut(s)	294
NspI	RCATGY	2 cut(s)	230, 354
PagI	TCATGA	1 cut(s)	439
PaqCI	CACCTGC	1 cut(s)	307
PfeI	GAWTC	1 cut(s)	131
PkrI	GCNGC	3 cut(s)	57, 163, 166
PshBI	ATTAAT	1 cut(s)	156
Psp6I	CCWGG	1 cut(s)	328
PspGI	CCWGG	1 cut(s)	328
PspN4I	GGNNCC	1 cut(s)	381
PspPI	GGNCC	1 cut(s)	4
PstI	CTGCAG	1 cut(s)	166
PvuII	CAGCTG	1 cut(s)	167
RsaI	GTAC	1 cut(s)	400
RsaNI	GTAC	1 cut(s)	399
SaqAI	TTAA	2 cut(s)	156, 312
SatI	GCNGC	3 cut(s)	56, 162, 165
Sau96I	GGNCC	1 cut(s)	4
ScaI	AGTACT	1 cut(s)	400
ScrFI	CCNGG	1 cut(s)	330
SduI	GDGCHC	1 cut(s)	384
SetI	ASST	6 cut(s)	70, 91, 169, 186, 225, 301
SfaNI	GCATC	1 cut(s)	394
SfcI	CTRYAG	2 cut(s)	162, 249
SmlI	CTYRAG	1 cut(s)	119
SmoI	CTYRAG	1 cut(s)	119
SpeI	ACTAGT	1 cut(s)	316
Sse9I	AATT	5 cut(s)	59, 141, 172, 196, 202
SspI	AATATT	1 cut(s)	343
SspMI	CTAG	1 cut(s)	317
StyD4I	CCNGG	1 cut(s)	328
StyI	CCWWGG	1 cut(s)	391
TasI	AATT	5 cut(s)	59, 141, 172, 196, 202
TatI	WGTACW	1 cut(s)	398
TfiI	GAWTC	1 cut(s)	131
Tru1I	TTAA	2 cut(s)	156, 312
Tru9I	TTAA	2 cut(s)	156, 312
TseFI	GTSAC	1 cut(s)	294
TseI	GCWGC	3 cut(s)	55, 161, 164
Tsp45I	GTSAC	1 cut(s)	294
TspDTI	ATGAA	1 cut(s)	428
VspI	ATTAAT	1 cut(s)	156
XapI	RAATTY	2 cut(s)	196, 202
XceI	RCATGY	2 cut(s)	230, 354
XmiI	GTMKAC	2 cut(s)	248, 260
XspI	CTAG	1 cut(s)	317
ZrmI	AGTACT	1 cut(s)	400

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.