RchiOBHm_Chr7g0213701

ABC transporter C family member

Basic Information

Type: gene
Biological Identity
rosa_chinensis
7
Physical Location & Seq
Forward (+)
30766110 .. 30769554
3445 bp
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UTR
Exon/CDS
Intron
PRQ19124

Sequence Viewer

Length: 243 bp
ATGACGCTTGCATTTGGGAGCTCGTGGTCTATATTTAATAGGGCTGTGTTGGTAGCTACCTTTGATCTAGAAGCTGCACAGAAATTCTTTCTGAAGATGCTTAGGAGTGTTTTCTGCGTACCAATGTCTTTCTTTGATTCTACTCCTGCTGGACGGATTTTGAATTGTATATATTCACCAGGATTGGATTCAGCTCCTCTTAGATGGGTCAATTTTGCTAATGGATTGCTACTTTTCCTATAA

Protein Analysis

80

Amino Acids

8.94

Weight (kDa)

8.84

Isoelectric Point (pI)

55.4

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcsI RAATTY 1 cut(s) 83
AcuI CTGAAG 1 cut(s) 113
AfaI GTAC 1 cut(s) 120
AgsI TTSAA 1 cut(s) 163
AjnI CCWGG 1 cut(s) 178
AluBI AGCT 4 cut(s) 21, 56, 74, 194
AluI AGCT 4 cut(s) 21, 56, 74, 194
Alw21I GWGCWC 1 cut(s) 23
ApeKI GCWGC 1 cut(s) 74
ApoI RAATTY 1 cut(s) 83
AsuHPI GGTGA 1 cut(s) 168
BanII GRGCYC 1 cut(s) 23
BauI CACGAG 1 cut(s) 22
Bbv12I GWGCWC 1 cut(s) 23
BbvI GCAGC 1 cut(s) 61
BccI CCATC 1 cut(s) 198
BciT130I CCWGG 1 cut(s) 180
BfaI CTAG 1 cut(s) 68
BisI GCNGC 1 cut(s) 75
BlsI GCNGC 1 cut(s) 76
Bme1390I CCNGG 1 cut(s) 180
BmrFI CCNGG 1 cut(s) 180
BmsI GCATC 1 cut(s) 87
Bpu10I CCTNAGC 1 cut(s) 101
BseBI CCWGG 1 cut(s) 180
BseRI GAGGAG 1 cut(s) 186
BseXI GCAGC 1 cut(s) 61
BsgI GTGCAG 1 cut(s) 60
BsiHKAI GWGCWC 1 cut(s) 23
Bsp1286I GDGCHC 1 cut(s) 23
Bsp143I GATC 1 cut(s) 64
BssMI GATC 1 cut(s) 64
BssSI CACGAG 1 cut(s) 22
Bst2BI CACGAG 1 cut(s) 22
Bst2UI CCWGG 1 cut(s) 180
BstC8I GCNNGC 1 cut(s) 9
BstDEI CTNAG 2 cut(s) 101, 200
BstKTI GATC 1 cut(s) 67
BstMBI GATC 1 cut(s) 64
BstNI CCWGG 1 cut(s) 180
BstSCI CCNGG 1 cut(s) 178
BstV1I GCAGC 1 cut(s) 61
Cac8I GCNNGC 1 cut(s) 9
CseI GACGC 1 cut(s) 13
Csp6I GTAC 1 cut(s) 119
CviJI RGCY 5 cut(s) 21, 44, 56, 74, 194
CviKI_1 RGCY 5 cut(s) 21, 44, 56, 74, 194
CviQI GTAC 1 cut(s) 119
DdeI CTNAG 2 cut(s) 101, 200
DpnI GATC 1 cut(s) 66
DpnII GATC 1 cut(s) 64
Ecl136II GAGCTC 1 cut(s) 21
Eco24I GRGCYC 1 cut(s) 23
Eco53kI GAGCTC 1 cut(s) 21
Eco57I CTGAAG 1 cut(s) 113
EcoICRI GAGCTC 1 cut(s) 21
EcoRII CCWGG 1 cut(s) 178
EcoT38I GRGCYC 1 cut(s) 23
FaiI YATR 4 cut(s) 32, 170, 172, 241
Fnu4HI GCNGC 1 cut(s) 75
FriOI GRGCYC 1 cut(s) 23
Fsp4HI GCNGC 1 cut(s) 75
FspBI CTAG 1 cut(s) 68
GluI GCNGC 1 cut(s) 75
HgaI GACGC 1 cut(s) 13
HinfI GANTC 2 cut(s) 137, 188
HphI GGTGA 1 cut(s) 168
Hpy188I TCNGA 1 cut(s) 93
Hpy188III TCNNGA 1 cut(s) 68
HpyCH4V TGCA 2 cut(s) 11, 77
HpyF3I CTNAG 2 cut(s) 101, 200
Kzo9I GATC 1 cut(s) 64
LmnI GCTCC 2 cut(s) 18, 199
LpnPI CCDG 4 cut(s) 135, 159, 165, 192
Lsp1109I GCAGC 1 cut(s) 61
LweI GCATC 1 cut(s) 87
MaeI CTAG 1 cut(s) 68
MalI GATC 1 cut(s) 66
MboI GATC 1 cut(s) 64
MboII GAAGA 1 cut(s) 106
MhlI GDGCHC 1 cut(s) 23
MluCI AATT 3 cut(s) 83, 163, 211
MnlI CCTC 1 cut(s) 207
MseI TTAA 1 cut(s) 36
MspR9I CCNGG 1 cut(s) 180
MvaI CCWGG 1 cut(s) 180
NdeII GATC 1 cut(s) 64
PfeI GAWTC 2 cut(s) 137, 188
PkrI GCNGC 1 cut(s) 76
Psp124BI GAGCTC 1 cut(s) 23
Psp6I CCWGG 1 cut(s) 178
PspGI CCWGG 1 cut(s) 178
RsaI GTAC 1 cut(s) 120
RsaNI GTAC 1 cut(s) 119
SacI GAGCTC 1 cut(s) 23
SaqAI TTAA 1 cut(s) 36
SatI GCNGC 1 cut(s) 75
Sau3AI GATC 1 cut(s) 64
ScrFI CCNGG 1 cut(s) 180
SduI GDGCHC 1 cut(s) 23
SetI ASST 5 cut(s) 23, 58, 62, 76, 196
SfaNI GCATC 1 cut(s) 87
SgeI CNNG 8 cut(s) 20, 34, 36, 80, 158, 162, 191, 192
Sse9I AATT 3 cut(s) 83, 163, 211
SspMI CTAG 1 cut(s) 68
SstI GAGCTC 1 cut(s) 23
StyD4I CCNGG 1 cut(s) 178
TasI AATT 3 cut(s) 83, 163, 211
TfiI GAWTC 2 cut(s) 137, 188
Tru1I TTAA 1 cut(s) 36
Tru9I TTAA 1 cut(s) 36
TseI GCWGC 1 cut(s) 74
TspGWI ACGGA 1 cut(s) 169
XapI RAATTY 1 cut(s) 83
XbaI TCTAGA 1 cut(s) 67
XspI CTAG 1 cut(s) 68
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.