Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5B

Orthogroup ID

OG0017829

Physical Location & Seq

Genomic Coordinates Reverse (-)

18613870 .. 18656097

Gene Structure 42228 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5BG175500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1311 bp

ATGAACCTCCATGGGGCATATCTTCATGTACTTGGGGATATCATTCAGAGCATTGGAGTGATGGTCACCGCAGTGGTCATATGGGCTAAGCCTGAATGGAAGATCACTGATCTCCTATGCACACTAGTATTTTCAATAGCTGTGCTGGCTACAACCATCGGCATGCTGCGGAAAATTGTTGGGGTTCTTATGGAGAGCACTCCAAGAGGGATCGACACCTTAAAGCTTGAGAAAGTTTTGTGTGAGCTGGATGCAGTAGTTGCCTGTCATGAACTGCACATATGCCATCTTGAAATTTCCTCATATACTTACTATCAATCTTCTCTATTTCCTCAATCACCTGCCTCACAAGGCCACCTCTCTCCTCCCCATCAACCAATGTTGGAGTTGCAGTGGCTGCCCGGTAATAGTTCCCAAAACTATTCTGCGGCAGAGAAATGTCTCTTGCAACACTTGTCTCTAAAGACTGCCATCTATGCTACCCACCAATTAGAATATCTAGAAGCAGCAGACCTTGTCTTGGTAATTAAAGGTGGTCAGATTGCTCAGTCTGGAAAATATGAAGATTTGATTGCCGACCTCAATGGTGAGCTTGTCAGACAAATGGCTGCACATAGGAAATCGTTAGACCAAGTTAACAGATGCCAAATAGATGTTTCCTTAAAGAGTAGACCTCATCAAGTTAATCTAATAGAGGTTGTGGAAGAGAAAGGGCCTTTCAACAATGGCAAGCTTCCGGAAAAGAGTCACGAAGAAGAAGCAGAAACTAGTTCAGTGAAATTGAGTGTTTATTCCACCTTTGTAACTTCTGCTTATGGAGGTGCTCTTGTCCCAGTTATCCTTCTCTGCCAAGTCCTCTTCCAGGGGCTGCAAATGGGCAGCAACTACTGGATGGCTTGGGGAACAGAGAAGGAAGGTAGGGTCAGTAGAGAGCGATTGATATGGGTATTTATTATGTTGTCTGGAGGGAGCTCCATCTTCATATTGGGAAGGGCAGTTTTTCTGGCAACTATTGCCATACAGACTGCTCAGAGCCTCTTCCTTAGAATGATAACTTCAGTATTCCGAGCACCCATCTCATTTTTCGACTCCACTCCTTCTAGCCGAATCCTGAACAGGTCTTCCACGGATCAAAGCACTGTAGACATGGACATTCCTTATAGATTAGCTGGATTAGCATTTGCACTGATCCAACTAATAAGCATCATAGTCCTTATGTCTCAAGTGGCTTGGCAAGTTTTCCTTCTTTTCCTCGGGGTTCTTGGACTCTCCATAGGGTATCAAGTAAGAACAGAGCTCATTTCGAAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000325 GO:0003674 GO:0003824 GO:0005215 GO:0005575 GO:0005576 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0005911 GO:0006810 GO:0008150 GO:0009506 GO:0010290 GO:0015399 GO:0015405 GO:0015431 GO:0016020 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0022804 GO:0022857 GO:0030054 GO:0031090 GO:0042623 GO:0042626 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043492 GO:0044422 GO:0044424 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0048046 GO:0051179 GO:0051234 GO:0055044 GO:0055085 GO:0071997 GO:0098588 GO:0098805

KEGG Pathways

Metabolic & Signaling

ko01523 ko01524 ko02010 ko04071 ko04976 ko04977 ko05206 map01523 map01524 map02010 map04071 map04976 map04977 map05206

Pfam Domains

Protein Families

ABC_membrane ABC_tran

Protein Analysis

436

Amino Acids

48.28

Weight (kDa)

6.31

Isoelectric Point (pI)

39.51

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Cation_efflux	PF01545	2 - 64	1.1e-07	Cation efflux transmembrane domain
ABC_membrane	PF00664	294 - 425	2.1e-14	ABC transporter transmembrane region

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0017829)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr7g0213701
rosa_laevigata	RLG00000006914
rosa_multiflora	Rmu_co8420433.1_g000001 Rmu_sc0007885.1_g000001
rosa_roxburghii	Rroxscaffold_3G00244840 Rroxscaffold_6G00423320 Rroxscaffold_7G00183790
rosa_rugosa	Rorug03G0123500
rosa_samantha	Rh2CG327200 Rh4CG331800 Rh4DG103900 Rh5BG175500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	349
Acc36I	ACCTGC	1 cut(s)	349
AccI	GTMKAC	2 cut(s)	670, 1143
AccIII	TCCGGA	1 cut(s)	736
AciI	CCGC	3 cut(s)	69, 169, 428
AclWI	GGATC	3 cut(s)	218, 1137, 1183
AcsI	RAATTY	1 cut(s)	294
AcuI	CTGAAG	1 cut(s)	1041
AfaI	GTAC	1 cut(s)	30
AfiI	CCNNNNNNNGG	3 cut(s)	13, 520, 862
AgsI	TTSAA	3 cut(s)	135, 293, 721
AhlI	ACTAGT	2 cut(s)	124, 767
AjnI	CCWGG	1 cut(s)	861
AleI	CACNNNNGTG	1 cut(s)	71
AloI	GAACNNNNNNTCC	2 cut(s)	1106, 1138
AluBI	AGCT	8 cut(s)	140, 226, 247, 592, 733, 972, 1169, 1297
AluI	AGCT	8 cut(s)	140, 226, 247, 592, 733, 972, 1169, 1297
Alw21I	GWGCWC	5 cut(s)	200, 826, 974, 1072, 1299
Alw26I	GTCTC	3 cut(s)	446, 462, 1224
AlwI	GGATC	3 cut(s)	218, 1137, 1183
AlwNI	CAGNNNCTG	2 cut(s)	397, 868
Ama87I	CYCGRG	1 cut(s)	1253
Aor13HI	TCCGGA	1 cut(s)	736
AoxI	GGCC	2 cut(s)	352, 713
ApeKI	GCWGC	6 cut(s)	166, 397, 506, 608, 868, 879
ApoI	RAATTY	1 cut(s)	294
AspS9I	GGNCC	1 cut(s)	713
AsuC2I	CCSGG	1 cut(s)	402
AsuHPI	GGTGA	3 cut(s)	58, 330, 599
AsuII	TTCGAA	1 cut(s)	1304
AvaI	CYCGRG	1 cut(s)	1253
BanII	GRGCYC	2 cut(s)	974, 1299
BbsI	GAAGAC	1 cut(s)	1113
Bbv12I	GWGCWC	5 cut(s)	200, 826, 974, 1072, 1299
BbvI	GCAGC	6 cut(s)	153, 384, 518, 595, 855, 891
BccI	CCATC	8 cut(s)	55, 164, 294, 378, 479, 886, 983, 1082
BciT130I	CCWGG	1 cut(s)	863
BcnI	CCSGG	1 cut(s)	402
BcoDI	GTCTC	3 cut(s)	446, 462, 1224
BcuI	ACTAGT	2 cut(s)	124, 767
BfaI	CTAG	4 cut(s)	125, 500, 768, 1101
BfmI	CTRYAG	1 cut(s)	1140
BfuAI	ACCTGC	1 cut(s)	349
BisI	GCNGC	7 cut(s)	167, 398, 429, 507, 609, 869, 880
BlpI	GCTNAGC	1 cut(s)	87
BlsI	GCNGC	7 cut(s)	168, 399, 430, 508, 610, 870, 881
Bme1390I	CCNGG	2 cut(s)	402, 863
BmeT110I	CYCGRG	1 cut(s)	1253
BmgT120I	GGNCC	1 cut(s)	713
BmrFI	CCNGG	2 cut(s)	402, 863
BmrI	ACTGGG	1 cut(s)	827
BmsI	GCATC	3 cut(s)	241, 632, 1212
BmuI	ACTGGG	1 cut(s)	827
BpiI	GAAGAC	1 cut(s)	1113
BplI	GAGNNNNNCTC	2 cut(s)	658, 690
BpmI	CTGGAG	1 cut(s)	984
Bpu1102I	GCTNAGC	1 cut(s)	87
Bpu14I	TTCGAA	1 cut(s)	1304
BpuEI	CTTGAG	2 cut(s)	248, 1206
BpuMI	CCSGG	1 cut(s)	402
BsaJI	CCNNGG	4 cut(s)	10, 862, 1125, 1252
BsaWI	WCCGGW	1 cut(s)	736
BsaXI	ACNNNNNCTCC	4 cut(s)	48, 78, 377, 407
Bsc4I	CCNNNNNNNGG	3 cut(s)	13, 520, 862
Bse1I	ACTGG	2 cut(s)	833, 893
BseAI	TCCGGA	1 cut(s)	736
BseBI	CCWGG	1 cut(s)	863
BseDI	CCNNGG	4 cut(s)	10, 862, 1125, 1252
BseGI	GGATG	2 cut(s)	256, 897
BseLI	CCNNNNNNNGG	3 cut(s)	13, 520, 862
BseMII	CTCAG	2 cut(s)	560, 1043
BseNI	ACTGG	2 cut(s)	833, 893
BseRI	GAGGAG	1 cut(s)	354
BseXI	GCAGC	6 cut(s)	153, 384, 518, 595, 855, 891
BsgI	GTGCAG	2 cut(s)	260, 594
BshFI	GGCC	2 cut(s)	354, 715
BsiHKAI	GWGCWC	5 cut(s)	200, 826, 974, 1072, 1299
BsiHKCI	CYCGRG	1 cut(s)	1253
BsiSI	CCGG	2 cut(s)	402, 737
BslFI	GGGAC	1 cut(s)	815
BslI	CCNNNNNNNGG	3 cut(s)	13, 520, 862
BsmAI	GTCTC	3 cut(s)	446, 462, 1224
BsmFI	GGGAC	1 cut(s)	815
BsnI	GGCC	2 cut(s)	354, 715
BsoBI	CYCGRG	1 cut(s)	1253
Bsp119I	TTCGAA	1 cut(s)	1304
Bsp1286I	GDGCHC	5 cut(s)	200, 826, 974, 1072, 1299
Bsp13I	TCCGGA	1 cut(s)	736
Bsp143I	GATC	5 cut(s)	102, 109, 210, 1129, 1188
Bsp1720I	GCTNAGC	1 cut(s)	87
Bsp19I	CCATGG	1 cut(s)	10
BspACI	CCGC	3 cut(s)	69, 169, 428
BspANI	GGCC	2 cut(s)	354, 715
BspCNI	CTCAG	2 cut(s)	559, 1042
BspEI	TCCGGA	1 cut(s)	736
BspHI	TCATGA	1 cut(s)	268
BspMI	ACCTGC	1 cut(s)	349
BspPI	GGATC	3 cut(s)	218, 1137, 1183
BspT104I	TTCGAA	1 cut(s)	1304
BsrI	ACTGG	2 cut(s)	833, 893
BssECI	CCNNGG	4 cut(s)	10, 862, 1125, 1252
BssMI	GATC	5 cut(s)	102, 109, 210, 1129, 1188
BssT1I	CCWWGG	1 cut(s)	10
Bst2UI	CCWGG	1 cut(s)	863
Bst4CI	ACNGT	1 cut(s)	1141
Bst6I	CTCTTC	3 cut(s)	699, 863, 1043
BstAPI	GCANNNNNTGC	3 cut(s)	260, 397, 1013
BstBI	TTCGAA	1 cut(s)	1304
BstC8I	GCNNGC	3 cut(s)	147, 164, 731
BstDEI	CTNAG	4 cut(s)	87, 546, 1029, 1043
BstDSI	CCRYGG	2 cut(s)	10, 1125
BstEII	GGTNACC	1 cut(s)	64
BstENI	CCTNNNNNAGG	1 cut(s)	860
BstF5I	GGATG	2 cut(s)	256, 897
BstKTI	GATC	5 cut(s)	105, 112, 213, 1132, 1191
BstMAI	GTCTC	3 cut(s)	446, 462, 1224
BstMBI	GATC	5 cut(s)	102, 109, 210, 1129, 1188
BstMWI	GCNNNNNNNGC	6 cut(s)	146, 260, 397, 476, 1013, 1175
BstNI	CCWGG	1 cut(s)	863
BstNSI	RCATGY	1 cut(s)	166
BstPI	GGTNACC	1 cut(s)	64
BstSCI	CCNGG	2 cut(s)	400, 861
BstSFI	CTRYAG	1 cut(s)	1140
BstV1I	GCAGC	6 cut(s)	153, 384, 518, 595, 855, 891
BstV2I	GAAGAC	1 cut(s)	1113
BsuRI	GGCC	2 cut(s)	354, 715
BtgI	CCRYGG	2 cut(s)	10, 1125
BtsCI	GGATG	2 cut(s)	256, 897
BtsI	GCAGTG	2 cut(s)	78, 398
BtsIMutI	CAGTG	6 cut(s)	78, 105, 398, 780, 1137, 1184
BveI	ACCTGC	1 cut(s)	349
Cac8I	GCNNGC	3 cut(s)	147, 164, 731
CaiI	CAGNNNCTG	2 cut(s)	397, 868
CciI	TCATGA	1 cut(s)	268
Cfr13I	GGNCC	1 cut(s)	713
Csp6I	GTAC	1 cut(s)	29
CviAII	CATG	5 cut(s)	11, 26, 163, 269, 1147
CviQI	GTAC	1 cut(s)	29
DdeI	CTNAG	4 cut(s)	87, 546, 1029, 1043
DpnI	GATC	5 cut(s)	104, 111, 212, 1131, 1190
DpnII	GATC	5 cut(s)	102, 109, 210, 1129, 1188
Eam1104I	CTCTTC	3 cut(s)	699, 863, 1043
EarI	CTCTTC	3 cut(s)	699, 863, 1043
Ecl136II	GAGCTC	2 cut(s)	972, 1297
Eco130I	CCWWGG	1 cut(s)	10
Eco24I	GRGCYC	2 cut(s)	974, 1299
Eco32I	GATATC	1 cut(s)	40
Eco53kI	GAGCTC	2 cut(s)	972, 1297
Eco57I	CTGAAG	1 cut(s)	1041
Eco88I	CYCGRG	1 cut(s)	1253
Eco91I	GGTNACC	1 cut(s)	64
EcoICRI	GAGCTC	2 cut(s)	972, 1297
EcoNI	CCTNNNNNAGG	1 cut(s)	860
EcoO109I	RGGNCCY	1 cut(s)	713
EcoO65I	GGTNACC	1 cut(s)	64
EcoRII	CCWGG	1 cut(s)	861
EcoRV	GATATC	1 cut(s)	40
EcoT14I	CCWWGG	1 cut(s)	10
EcoT38I	GRGCYC	2 cut(s)	974, 1299
ErhI	CCWWGG	1 cut(s)	10
FaeI	CATG	5 cut(s)	14, 29, 166, 272, 1150
FalI	AAGNNNNNCTT	2 cut(s)	1227, 1259
FaqI	GGGAC	1 cut(s)	815
FatI	CATG	5 cut(s)	10, 25, 162, 268, 1146
FauNDI	CATATG	2 cut(s)	80, 281
FblI	GTMKAC	2 cut(s)	670, 1143
Fnu4HI	GCNGC	7 cut(s)	167, 398, 429, 507, 609, 869, 880
FokI	GGATG	2 cut(s)	263, 904
FriOI	GRGCYC	2 cut(s)	974, 1299
Fsp4HI	GCNGC	7 cut(s)	167, 398, 429, 507, 609, 869, 880
FspBI	CTAG	4 cut(s)	125, 500, 768, 1101
GluI	GCNGC	7 cut(s)	167, 398, 429, 507, 609, 869, 880
GsuI	CTGGAG	1 cut(s)	984
HaeIII	GGCC	2 cut(s)	354, 715
HapII	CCGG	2 cut(s)	402, 737
Hin1II	CATG	5 cut(s)	14, 29, 166, 272, 1150
HincII	GTYRAC	1 cut(s)	637
HindII	GTYRAC	1 cut(s)	637
HindIII	AAGCTT	2 cut(s)	224, 731
HinfI	GANTC	4 cut(s)	745, 1088, 1107, 1266
HpaI	GTTAAC	1 cut(s)	637
HpaII	CCGG	2 cut(s)	402, 737
HphI	GGTGA	3 cut(s)	58, 330, 599
Hpy166II	GTNNAC	3 cut(s)	637, 671, 1144
Hpy188I	TCNGA	5 cut(s)	48, 540, 599, 1032, 1067
Hpy188III	TCNNGA	8 cut(s)	269, 290, 500, 552, 737, 749, 963, 1111
Hpy8I	GTNNAC	3 cut(s)	637, 671, 1144
HpyAV	CCTTC	6 cut(s)	851, 904, 908, 984, 1107, 1253
HpyCH4III	ACNGT	1 cut(s)	1141
HpyCH4V	TGCA	8 cut(s)	120, 254, 277, 391, 448, 611, 871, 1184
HpyF10VI	GCNNNNNNNGC	6 cut(s)	146, 260, 397, 476, 1013, 1175
HpyF3I	CTNAG	4 cut(s)	87, 546, 1029, 1043
Hsp92II	CATG	5 cut(s)	14, 29, 166, 272, 1150
Kpn2I	TCCGGA	1 cut(s)	736
KspAI	GTTAAC	1 cut(s)	637
Kzo9I	GATC	5 cut(s)	102, 109, 210, 1129, 1188
LmnI	GCTCC	2 cut(s)	969, 977
Lsp1109I	GCAGC	6 cut(s)	153, 384, 518, 595, 855, 891
LweI	GCATC	3 cut(s)	241, 632, 1212
MaeI	CTAG	4 cut(s)	125, 500, 768, 1101
MaeIII	GTNAC	3 cut(s)	64, 746, 802
MalI	GATC	5 cut(s)	104, 111, 212, 1131, 1190
MboI	GATC	5 cut(s)	102, 109, 210, 1129, 1188
MhlI	GDGCHC	5 cut(s)	200, 826, 974, 1072, 1299
MluCI	AATT	5 cut(s)	174, 294, 488, 525, 779
MlyI	GAGTC	3 cut(s)	754, 1082, 1260
MmeI	TCCRAC	2 cut(s)	363, 1216
MroI	TCCGGA	1 cut(s)	736
MseI	TTAA	5 cut(s)	221, 528, 636, 662, 684
MslI	CAYNNNNRTG	3 cut(s)	56, 71, 161
MspI	CCGG	2 cut(s)	402, 737
MspR9I	CCNGG	2 cut(s)	402, 863
MvaI	CCWGG	1 cut(s)	863
MwoI	GCNNNNNNNGC	6 cut(s)	146, 260, 397, 476, 1013, 1175
NciI	CCSGG	1 cut(s)	402
NcoI	CCATGG	1 cut(s)	10
NdeI	CATATG	2 cut(s)	80, 281
NdeII	GATC	5 cut(s)	102, 109, 210, 1129, 1188
NlaIII	CATG	5 cut(s)	14, 29, 166, 272, 1150
NmuCI	GTSAC	2 cut(s)	64, 746
NspI	RCATGY	1 cut(s)	166
NspV	TTCGAA	1 cut(s)	1304
OliI	CACNNNNGTG	1 cut(s)	71
PaeI	GCATGC	1 cut(s)	166
PagI	TCATGA	1 cut(s)	268
PaqCI	CACCTGC	1 cut(s)	349
PfeI	GAWTC	1 cut(s)	1107
PflFI	GACNNNGTC	1 cut(s)	515
PkrI	GCNGC	7 cut(s)	168, 399, 430, 508, 610, 870, 881
PleI	GAGTC	3 cut(s)	753, 1082, 1260
PpsI	GAGTC	3 cut(s)	753, 1082, 1260
Psp124BI	GAGCTC	2 cut(s)	974, 1299
Psp6I	CCWGG	1 cut(s)	861
PspEI	GGTNACC	1 cut(s)	64
PspGI	CCWGG	1 cut(s)	861
PspPI	GGNCC	1 cut(s)	713
PstNI	CAGNNNCTG	2 cut(s)	397, 868
PsyI	GACNNNGTC	1 cut(s)	515
RsaI	GTAC	1 cut(s)	30
RsaNI	GTAC	1 cut(s)	29
RseI	CAYNNNNRTG	3 cut(s)	56, 71, 161
SacI	GAGCTC	2 cut(s)	974, 1299
SaqAI	TTAA	5 cut(s)	221, 528, 636, 662, 684
SatI	GCNGC	7 cut(s)	167, 398, 429, 507, 609, 869, 880
Sau3AI	GATC	5 cut(s)	102, 109, 210, 1129, 1188
Sau96I	GGNCC	1 cut(s)	713
SchI	GAGTC	3 cut(s)	754, 1082, 1260
ScrFI	CCNGG	2 cut(s)	402, 863
SduI	GDGCHC	5 cut(s)	200, 826, 974, 1072, 1299
SfaNI	GCATC	3 cut(s)	241, 632, 1212
SfcI	CTRYAG	1 cut(s)	1140
SfuI	TTCGAA	1 cut(s)	1304
SmiMI	CAYNNNNRTG	3 cut(s)	56, 71, 161
SmlI	CTYRAG	2 cut(s)	227, 1221
SmoI	CTYRAG	2 cut(s)	227, 1221
SpeI	ACTAGT	2 cut(s)	124, 767
SphI	GCATGC	1 cut(s)	166
Sse9I	AATT	5 cut(s)	174, 294, 488, 525, 779
SsiI	CCGC	3 cut(s)	69, 169, 428
SspMI	CTAG	4 cut(s)	125, 500, 768, 1101
SstI	GAGCTC	2 cut(s)	974, 1299
StyD4I	CCNGG	2 cut(s)	400, 861
StyI	CCWWGG	1 cut(s)	10
TaaI	ACNGT	1 cut(s)	1141
TaqI	TCGA	3 cut(s)	213, 1086, 1304
TasI	AATT	5 cut(s)	174, 294, 488, 525, 779
TatI	WGTACW	1 cut(s)	28
TauI	GCSGC	1 cut(s)	431
TfiI	GAWTC	1 cut(s)	1107
Tru1I	TTAA	5 cut(s)	221, 528, 636, 662, 684
Tru9I	TTAA	5 cut(s)	221, 528, 636, 662, 684
TscAI	CASTG	6 cut(s)	78, 112, 398, 780, 1144, 1191
TseFI	GTSAC	2 cut(s)	64, 746
TseI	GCWGC	6 cut(s)	166, 397, 506, 608, 868, 879
Tsp45I	GTSAC	2 cut(s)	64, 746
TspDTI	ATGAA	5 cut(s)	14, 17, 285, 576, 970
TspGWI	ACGGA	1 cut(s)	1142
TspRI	CASTG	6 cut(s)	78, 112, 398, 780, 1144, 1191
Tth111I	GACNNNGTC	1 cut(s)	515
XagI	CCTNNNNNAGG	1 cut(s)	860
XapI	RAATTY	1 cut(s)	294
XbaI	TCTAGA	1 cut(s)	499
XceI	RCATGY	1 cut(s)	166
XcmI	CCANNNNNNNNNTGG	1 cut(s)	982
XmiI	GTMKAC	2 cut(s)	670, 1143
XspI	CTAG	4 cut(s)	125, 500, 768, 1101

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.