Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000003

Orthogroup ID

OG0017829

Physical Location & Seq

Genomic Coordinates Forward (+)

37670607 .. 37673553

Gene Structure 2947 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_3G00244840.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 636 bp

ATGGCTCTGTTGGACATGGCAAAAACCCTAATGTACCAAGCAGCAGTGTTGATTGTTTGGCAAAGGAAGTGCAAGAAGGTCCATCACCTTCAGAGCAGAAAGCAATTAAAGAGAAAAGAAGGCAAAGCCTGCAAGAAACAAGCAGCTTGTACAAGAAGAGGAAGAGTCAGCATGAAGGTTTACTTGTCATATATGGCTGCATCATATAAAGGATCACTGATTCCACTCATAATCATTGCACAAGTAATATTTCAATTCCTTCAAATTGCTAGTAGTTGGTGTGCTTGGGCGAATCCCCAAACACAGGGAGATCAGCCTAAAGTGAGTGCTATGGTCCTTCTCGGTGTTTACATGACCCTTGCATTTGGGAGCTCGTGGTCTATATTTATTAGGGCTGTGTTGGTAGCTACCTTTGGTCTAGAAGCTGCACAGAAATTCTTTCTGAAGATGCTTAGGAGTGTTTTCTACGCACCATTGTCTTTCTTTGATTCTACCCCTGCTGGAAGGATTTTGAATTGTAATAGAAAATGCTATTGTTTAGTAAACTCTCATGAAATACTTCGTGTTAATTTCTACCCGGATATATTCACCAGATTGGATTCAGCTCCTCCTAGATTTAGGGATGGTTTGGTGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000325 GO:0001101 GO:0003674 GO:0003824 GO:0004888 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0006810 GO:0006873 GO:0006875 GO:0006950 GO:0006970 GO:0007154 GO:0007165 GO:0008150 GO:0008281 GO:0009628 GO:0009651 GO:0009719 GO:0009725 GO:0009737 GO:0009738 GO:0009755 GO:0009987 GO:0010033 GO:0010118 GO:0015399 GO:0015405 GO:0016020 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0019725 GO:0022804 GO:0022857 GO:0023052 GO:0030003 GO:0030004 GO:0030007 GO:0031090 GO:0032870 GO:0033993 GO:0038023 GO:0042221 GO:0042592 GO:0042623 GO:0042626 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043492 GO:0044422 GO:0044424 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0048878 GO:0050789 GO:0050794 GO:0050801 GO:0050896 GO:0051179 GO:0051234 GO:0051716 GO:0055065 GO:0055067 GO:0055075 GO:0055080 GO:0055082 GO:0055085 GO:0060089 GO:0065007 GO:0065008 GO:0070887 GO:0071215 GO:0071229 GO:0071310 GO:0071396 GO:0071495 GO:0097305 GO:0097306 GO:0098588 GO:0098771 GO:0098805 GO:1901527 GO:1901700 GO:1901701

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

ABC_membrane ABC_tran

Protein Analysis

211

Amino Acids

23.99

Weight (kDa)

10.1

Isoelectric Point (pI)

51.4

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ABC_membrane	PF00664	85 - 172	6.6e-07	ABC transporter transmembrane region

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Orthologous Genes (Group: OG0017829)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr7g0213701
rosa_laevigata	RLG00000006914
rosa_multiflora	Rmu_co8420433.1_g000001 Rmu_sc0007885.1_g000001
rosa_roxburghii	Rroxscaffold_3G00244840 Rroxscaffold_6G00423320 Rroxscaffold_7G00183790
rosa_rugosa	Rorug03G0123500
rosa_samantha	Rh2CG327200 Rh4CG331800 Rh4DG103900 Rh5BG175500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	1 cut(s)	220
AcsI	RAATTY	1 cut(s)	434
AcuI	CTGAAG	2 cut(s)	74, 464
AfaI	GTAC	2 cut(s)	35, 151
AfiI	CCNNNNNNNGG	1 cut(s)	304
AgsI	TTSAA	3 cut(s)	254, 263, 514
AluBI	AGCT	5 cut(s)	146, 372, 407, 425, 605
AluI	AGCT	5 cut(s)	146, 372, 407, 425, 605
Alw21I	GWGCWC	1 cut(s)	374
AlwI	GGATC	1 cut(s)	220
ApeKI	GCWGC	4 cut(s)	41, 143, 197, 425
ApoI	RAATTY	1 cut(s)	434
Asp700I	GAANNNNTTC	1 cut(s)	558
AspS9I	GGNCC	2 cut(s)	79, 334
AsuC2I	CCSGG	1 cut(s)	578
AsuHPI	GGTGA	2 cut(s)	77, 580
AvaII	GGWCC	2 cut(s)	79, 334
BanII	GRGCYC	1 cut(s)	374
BauI	CACGAG	1 cut(s)	373
Bbv12I	GWGCWC	1 cut(s)	374
BbvI	GCAGC	4 cut(s)	53, 155, 184, 412
BccI	CCATC	2 cut(s)	90, 617
BcnI	CCSGG	1 cut(s)	578
BfaI	CTAG	3 cut(s)	270, 419, 612
BisI	GCNGC	4 cut(s)	42, 144, 198, 426
BlsI	GCNGC	4 cut(s)	43, 145, 199, 427
Bme1390I	CCNGG	1 cut(s)	578
Bme18I	GGWCC	2 cut(s)	79, 334
BmgT120I	GGNCC	2 cut(s)	79, 334
BmrFI	CCNGG	1 cut(s)	578
BmsI	GCATC	2 cut(s)	209, 438
Bpu10I	CCTNAGC	1 cut(s)	452
BpuMI	CCSGG	1 cut(s)	578
Bsc4I	CCNNNNNNNGG	1 cut(s)	304
Bse3DI	GCAATG	1 cut(s)	234
BseGI	GGATG	1 cut(s)	628
BseLI	CCNNNNNNNGG	1 cut(s)	304
BseMI	GCAATG	1 cut(s)	234
BseRI	GAGGAG	1 cut(s)	597
BseXI	GCAGC	4 cut(s)	53, 155, 184, 412
BsgI	GTGCAG	1 cut(s)	411
BsiHKAI	GWGCWC	1 cut(s)	374
BsiSI	CCGG	1 cut(s)	578
BslI	CCNNNNNNNGG	1 cut(s)	304
Bsp1286I	GDGCHC	1 cut(s)	374
Bsp1407I	TGTACA	1 cut(s)	149
Bsp143I	GATC	2 cut(s)	212, 310
BspHI	TCATGA	1 cut(s)	550
BspPI	GGATC	1 cut(s)	220
BsrDI	GCAATG	1 cut(s)	234
BsrGI	TGTACA	1 cut(s)	149
BssMI	GATC	2 cut(s)	212, 310
BssSI	CACGAG	1 cut(s)	373
Bst2BI	CACGAG	1 cut(s)	373
Bst6I	CTCTTC	2 cut(s)	151, 157
BstAPI	GCANNNNNTGC	1 cut(s)	129
BstAUI	TGTACA	1 cut(s)	149
BstC8I	GCNNGC	1 cut(s)	130
BstDEI	CTNAG	1 cut(s)	452
BstF5I	GGATG	1 cut(s)	628
BstKTI	GATC	2 cut(s)	215, 313
BstMBI	GATC	2 cut(s)	212, 310
BstMWI	GCNNNNNNNGC	1 cut(s)	129
BstSCI	CCNGG	1 cut(s)	576
BstV1I	GCAGC	4 cut(s)	53, 155, 184, 412
BtsCI	GGATG	1 cut(s)	628
BtsI	GCAGTG	1 cut(s)	51
BtsIMutI	CAGTG	2 cut(s)	51, 215
Cac8I	GCNNGC	1 cut(s)	130
CciI	TCATGA	1 cut(s)	550
Cfr13I	GGNCC	2 cut(s)	79, 334
Csp6I	GTAC	2 cut(s)	34, 150
CviAII	CATG	4 cut(s)	16, 172, 352, 551
CviQI	GTAC	2 cut(s)	34, 150
DdeI	CTNAG	1 cut(s)	452
DpnI	GATC	2 cut(s)	214, 312
DpnII	GATC	2 cut(s)	212, 310
Eam1104I	CTCTTC	2 cut(s)	151, 157
EarI	CTCTTC	2 cut(s)	151, 157
Ecl136II	GAGCTC	1 cut(s)	372
Eco24I	GRGCYC	1 cut(s)	374
Eco47I	GGWCC	2 cut(s)	79, 334
Eco53kI	GAGCTC	1 cut(s)	372
Eco57I	CTGAAG	2 cut(s)	74, 464
EcoICRI	GAGCTC	1 cut(s)	372
EcoT38I	GRGCYC	1 cut(s)	374
FaeI	CATG	4 cut(s)	19, 175, 355, 554
FalI	AAGNNNNNCTT	2 cut(s)	167, 199
FatI	CATG	4 cut(s)	15, 171, 351, 550
Fnu4HI	GCNGC	4 cut(s)	42, 144, 198, 426
FriOI	GRGCYC	1 cut(s)	374
Fsp4HI	GCNGC	4 cut(s)	42, 144, 198, 426
FspBI	CTAG	3 cut(s)	270, 419, 612
GluI	GCNGC	4 cut(s)	42, 144, 198, 426
HapII	CCGG	1 cut(s)	578
Hin1II	CATG	4 cut(s)	19, 175, 355, 554
HinfI	GANTC	5 cut(s)	165, 220, 292, 488, 599
HpaII	CCGG	1 cut(s)	578
HphI	GGTGA	2 cut(s)	77, 580
Hpy166II	GTNNAC	3 cut(s)	181, 349, 544
Hpy188I	TCNGA	2 cut(s)	93, 444
Hpy188III	TCNNGA	2 cut(s)	419, 551
Hpy8I	GTNNAC	3 cut(s)	181, 349, 544
HpyAV	CCTTC	7 cut(s)	70, 98, 113, 169, 269, 347, 498
HpyCH4V	TGCA	6 cut(s)	72, 132, 200, 239, 362, 428
HpyF10VI	GCNNNNNNNGC	1 cut(s)	129
HpyF3I	CTNAG	1 cut(s)	452
Hsp92II	CATG	4 cut(s)	19, 175, 355, 554
Kzo9I	GATC	2 cut(s)	212, 310
LmnI	GCTCC	2 cut(s)	369, 610
LpnPI	CCDG	6 cut(s)	142, 290, 486, 510, 591, 604
Lsp1109I	GCAGC	4 cut(s)	53, 155, 184, 412
LweI	GCATC	2 cut(s)	209, 438
MaeI	CTAG	3 cut(s)	270, 419, 612
MalI	GATC	2 cut(s)	214, 312
MboI	GATC	2 cut(s)	212, 310
MboII	GAAGA	3 cut(s)	168, 174, 457
MhlI	GDGCHC	1 cut(s)	374
MluCI	AATT	6 cut(s)	104, 254, 264, 434, 514, 568
MlyI	GAGTC	1 cut(s)	174
MnlI	CCTC	2 cut(s)	152, 618
MroXI	GAANNNNTTC	1 cut(s)	558
MseI	TTAA	2 cut(s)	107, 567
MspI	CCGG	1 cut(s)	578
MspR9I	CCNGG	1 cut(s)	578
MwoI	GCNNNNNNNGC	1 cut(s)	129
NciI	CCSGG	1 cut(s)	578
NdeII	GATC	2 cut(s)	212, 310
NlaIII	CATG	4 cut(s)	19, 175, 355, 554
PagI	TCATGA	1 cut(s)	550
PdmI	GAANNNNTTC	1 cut(s)	558
PfeI	GAWTC	4 cut(s)	220, 292, 488, 599
PkrI	GCNGC	4 cut(s)	43, 145, 199, 427
PleI	GAGTC	1 cut(s)	173
PpsI	GAGTC	1 cut(s)	173
Psp124BI	GAGCTC	1 cut(s)	374
PspPI	GGNCC	2 cut(s)	79, 334
RsaI	GTAC	2 cut(s)	35, 151
RsaNI	GTAC	2 cut(s)	34, 150
SacI	GAGCTC	1 cut(s)	374
SaqAI	TTAA	2 cut(s)	107, 567
SatI	GCNGC	4 cut(s)	42, 144, 198, 426
Sau3AI	GATC	2 cut(s)	212, 310
Sau96I	GGNCC	2 cut(s)	79, 334
SchI	GAGTC	1 cut(s)	174
ScrFI	CCNGG	1 cut(s)	578
SduI	GDGCHC	1 cut(s)	374
SetI	ASST	9 cut(s)	81, 90, 148, 180, 374, 409, 413, 427, 607
SfaNI	GCATC	2 cut(s)	209, 438
SinI	GGWCC	2 cut(s)	79, 334
Sse9I	AATT	6 cut(s)	104, 254, 264, 434, 514, 568
SspI	AATATT	1 cut(s)	249
SspMI	CTAG	3 cut(s)	270, 419, 612
SstI	GAGCTC	1 cut(s)	374
StyD4I	CCNGG	1 cut(s)	576
TasI	AATT	6 cut(s)	104, 254, 264, 434, 514, 568
TatI	WGTACW	1 cut(s)	149
TfiI	GAWTC	4 cut(s)	220, 292, 488, 599
Tru1I	TTAA	2 cut(s)	107, 567
Tru9I	TTAA	2 cut(s)	107, 567
TscAI	CASTG	2 cut(s)	51, 222
TseI	GCWGC	4 cut(s)	41, 143, 197, 425
TspDTI	ATGAA	2 cut(s)	188, 567
TspRI	CASTG	2 cut(s)	51, 222
VpaK11BI	GGWCC	2 cut(s)	79, 334
XapI	RAATTY	1 cut(s)	434
XbaI	TCTAGA	1 cut(s)	418
XmnI	GAANNNNTTC	1 cut(s)	558
XspI	CTAG	3 cut(s)	270, 419, 612

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.