Rroxscaffold_7G00183790

No description available

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000007
Physical Location & Seq
Reverse (-)
22971849 .. 22974700
2852 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_7G00183790.1

Sequence Viewer

Length: 288 bp
ATGTTAAGAAAGATAGAGAAGAAAAGAGGAAGAAATAGGAAGAGGGAAGAAGTCAAGGTGGAGTCATATTTGCGCATCATTGGAGAGCCAAAGCTTCCGTCTGTATTTCTTCAGATATATTCACCAGGATTGGATTCAGCTCCTCTTAGATGGGTCAATTTTGCTAATGGATTGCTACTTCTCCATTTTGTTATTGCCTGCTCATTGGATAATTATCATGTAGCTGAAGACTACATAATGAAGGTTCGATGTTGGACAAGGAGTTCAGAAGTTCAAAGCGGGCGATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

95

Amino Acids

11.12

Weight (kDa)

9.79

Isoelectric Point (pI)

69.9

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 74
AciI CCGC 1 cut(s) 279
AcuI CTGAAG 2 cut(s) 95, 246
AgsI TTSAA 1 cut(s) 275
AjnI CCWGG 1 cut(s) 124
AloI GAACNNNNNNTCC 2 cut(s) 247, 279
AluBI AGCT 3 cut(s) 94, 140, 224
AluI AGCT 3 cut(s) 94, 140, 224
ArsI GACNNNNNNTTYG 2 cut(s) 83, 115
AspLEI GCGC 1 cut(s) 75
AsuHPI GGTGA 1 cut(s) 114
BbsI GAAGAC 1 cut(s) 234
BccI CCATC 1 cut(s) 144
BciT130I CCWGG 1 cut(s) 126
Bme1390I CCNGG 1 cut(s) 126
BmrFI CCNGG 1 cut(s) 126
BmsI GCATC 1 cut(s) 84
BpiI GAAGAC 1 cut(s) 234
BsaBI GATNNNNATC 1 cut(s) 213
Bse8I GATNNNNATC 1 cut(s) 213
BseBI CCWGG 1 cut(s) 126
BseJI GATNNNNATC 1 cut(s) 213
BseRI GAGGAG 1 cut(s) 132
BspACI CCGC 1 cut(s) 279
Bst2UI CCWGG 1 cut(s) 126
Bst6I CTCTTC 1 cut(s) 35
BstC8I GCNNGC 2 cut(s) 199, 281
BstDEI CTNAG 1 cut(s) 146
BstHHI GCGC 1 cut(s) 75
BstNI CCWGG 1 cut(s) 126
BstSCI CCNGG 1 cut(s) 124
BstV2I GAAGAC 1 cut(s) 234
Cac8I GCNNGC 2 cut(s) 199, 281
CfoI GCGC 1 cut(s) 75
CviAII CATG 1 cut(s) 218
CviJI RGCY 4 cut(s) 88, 94, 140, 224
CviKI_1 RGCY 4 cut(s) 88, 94, 140, 224
DdeI CTNAG 1 cut(s) 146
Eam1104I CTCTTC 1 cut(s) 35
EarI CTCTTC 1 cut(s) 35
Eco57I CTGAAG 2 cut(s) 95, 246
EcoRII CCWGG 1 cut(s) 124
FaeI CATG 1 cut(s) 221
FaiI YATR 4 cut(s) 67, 118, 219, 236
FatI CATG 1 cut(s) 217
FauI CCCGC 1 cut(s) 272
FspI TGCGCA 1 cut(s) 74
GlaI GCGC 1 cut(s) 74
HhaI GCGC 1 cut(s) 75
Hin1II CATG 1 cut(s) 221
Hin6I GCGC 1 cut(s) 73
HinP1I GCGC 1 cut(s) 73
HindIII AAGCTT 1 cut(s) 92
HinfI GANTC 2 cut(s) 62, 134
HphI GGTGA 1 cut(s) 114
Hpy188I TCNGA 2 cut(s) 114, 268
HpyAV CCTTC 1 cut(s) 235
HpyF3I CTNAG 1 cut(s) 146
Hsp92II CATG 1 cut(s) 221
HspAI GCGC 1 cut(s) 73
LmnI GCTCC 1 cut(s) 145
LpnPI CCDG 3 cut(s) 111, 138, 211
LweI GCATC 1 cut(s) 84
MboII GAAGA 6 cut(s) 31, 42, 52, 59, 101, 239
MluCI AATT 2 cut(s) 157, 211
MlyI GAGTC 1 cut(s) 71
MmeI TCCRAC 1 cut(s) 233
MnlI CCTC 3 cut(s) 20, 36, 153
MseI TTAA 1 cut(s) 5
MspR9I CCNGG 1 cut(s) 126
MvaI CCWGG 1 cut(s) 126
NlaIII CATG 1 cut(s) 221
NsbI TGCGCA 1 cut(s) 74
PfeI GAWTC 1 cut(s) 134
PleI GAGTC 1 cut(s) 70
PpsI GAGTC 1 cut(s) 70
Psp6I CCWGG 1 cut(s) 124
PspGI CCWGG 1 cut(s) 124
SaqAI TTAA 1 cut(s) 5
SchI GAGTC 1 cut(s) 71
ScrFI CCNGG 1 cut(s) 126
SetI ASST 5 cut(s) 60, 96, 142, 226, 246
SfaNI GCATC 1 cut(s) 84
SgeI CNNG 6 cut(s) 67, 137, 138, 210, 230, 270
Sse9I AATT 2 cut(s) 157, 211
SsiI CCGC 1 cut(s) 279
StyD4I CCNGG 1 cut(s) 124
TaqI TCGA 1 cut(s) 247
TasI AATT 2 cut(s) 157, 211
TfiI GAWTC 1 cut(s) 134
Tru1I TTAA 1 cut(s) 5
Tru9I TTAA 1 cut(s) 5
TspDTI ATGAA 1 cut(s) 254
TspGWI ACGGA 1 cut(s) 87
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.