Rh4CG331800

ABC transporter C family member

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4C
OG0017829
Physical Location & Seq
Forward (+)
59250157 .. 59252984
2828 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4CG331800.1

Sequence Viewer

Length: 354 bp
ATGTTGTCTGGAGGGAGCTCCATCTTCATATTGGGAAGGGCAGTTTTTCTGGCAACTATTGCTATACAGACTGCTCAGAGTCTCTTCCTTGGAATGATAACTTCAGTATTCCGAGCACCCATCTCATTTTTCGACTCCACTCCTTCTAGCCGAATCCTGAATAGGGTTCTCAATCAGTGTCGACTTGCAGAGATAGTTAGGCAAGACCAAAGGCTTCTTGATGCACCTGGAAAGGTTTTAGAGTATGACTCTCCAGCTCGGTTACTTGAGGATAGTTCTTCTGCATTCTCCAAGTTGGTGGCAGAATACTCGAGAAGATCTTCCATGAGCAACTGCTTTAGAGACCTATCTTGA

Protein Analysis

117

Amino Acids

12.93

Weight (kDa)

9.29

Isoelectric Point (pI)

62.45

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ABC_membrane PF00664 4 - 61 1.1e-07 ABC transporter transmembrane region
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 181
AcuI CTGAAG 1 cut(s) 87
AfiI CCNNNNNNNGG 1 cut(s) 163
AjnI CCWGG 1 cut(s) 226
AluBI AGCT 2 cut(s) 18, 257
AluI AGCT 2 cut(s) 18, 257
Alw21I GWGCWC 2 cut(s) 20, 118
Alw26I GTCTC 2 cut(s) 86, 336
Ama87I CYCGRG 1 cut(s) 310
Asp700I GAANNNNTTC 1 cut(s) 319
AvaI CYCGRG 1 cut(s) 310
BanII GRGCYC 1 cut(s) 20
Bbv12I GWGCWC 2 cut(s) 20, 118
BccI CCATC 2 cut(s) 29, 128
BcgI CGANNNNNNTGC 2 cut(s) 291, 325
BciT130I CCWGG 1 cut(s) 228
BcoDI GTCTC 2 cut(s) 86, 336
BfaI CTAG 1 cut(s) 147
BglII AGATCT 1 cut(s) 317
Bme1390I CCNGG 1 cut(s) 228
BmeT110I CYCGRG 1 cut(s) 310
BmrFI CCNGG 1 cut(s) 228
BmsI GCATC 1 cut(s) 211
BplI GAGNNNNNCTC 2 cut(s) 233, 265
BpmI CTGGAG 2 cut(s) 30, 237
BpuEI CTTGAG 1 cut(s) 287
BsaI GGTCTC 1 cut(s) 336
BsaJI CCNNGG 1 cut(s) 88
Bsc4I CCNNNNNNNGG 1 cut(s) 163
BseBI CCWGG 1 cut(s) 228
BseDI CCNNGG 1 cut(s) 88
BseLI CCNNNNNNNGG 1 cut(s) 163
BseMII CTCAG 1 cut(s) 89
BsiHKAI GWGCWC 2 cut(s) 20, 118
BsiHKCI CYCGRG 1 cut(s) 310
BslI CCNNNNNNNGG 1 cut(s) 163
BsmAI GTCTC 2 cut(s) 86, 336
BsmI GAATGC 1 cut(s) 284
Bso31I GGTCTC 1 cut(s) 336
BsoBI CYCGRG 1 cut(s) 310
Bsp1286I GDGCHC 2 cut(s) 20, 118
Bsp143I GATC 1 cut(s) 317
BspCNI CTCAG 1 cut(s) 88
BspTNI GGTCTC 1 cut(s) 336
BssECI CCNNGG 1 cut(s) 88
BssMI GATC 1 cut(s) 317
BssT1I CCWWGG 1 cut(s) 88
Bst2UI CCWGG 1 cut(s) 228
Bst6I CTCTTC 1 cut(s) 89
BstAPI GCANNNNNTGC 1 cut(s) 59
BstDEI CTNAG 1 cut(s) 75
BstKTI GATC 1 cut(s) 320
BstMAI GTCTC 2 cut(s) 86, 336
BstMBI GATC 1 cut(s) 317
BstMWI GCNNNNNNNGC 1 cut(s) 59
BstNI CCWGG 1 cut(s) 228
BstSCI CCNGG 1 cut(s) 226
BstX2I RGATCY 1 cut(s) 317
BstXI CCANNNNNNTGG 1 cut(s) 298
BstYI RGATCY 1 cut(s) 317
BtsIMutI CAGTG 1 cut(s) 182
CviAII CATG 1 cut(s) 325
CviJI RGCY 4 cut(s) 18, 150, 214, 257
CviKI_1 RGCY 4 cut(s) 18, 150, 214, 257
DdeI CTNAG 1 cut(s) 75
DpnI GATC 1 cut(s) 319
DpnII GATC 1 cut(s) 317
Eam1104I CTCTTC 1 cut(s) 89
EarI CTCTTC 1 cut(s) 89
Ecl136II GAGCTC 1 cut(s) 18
Eco130I CCWWGG 1 cut(s) 88
Eco24I GRGCYC 1 cut(s) 20
Eco31I GGTCTC 1 cut(s) 336
Eco53kI GAGCTC 1 cut(s) 18
Eco57I CTGAAG 1 cut(s) 87
Eco88I CYCGRG 1 cut(s) 310
EcoICRI GAGCTC 1 cut(s) 18
EcoRII CCWGG 1 cut(s) 226
EcoT14I CCWWGG 1 cut(s) 88
EcoT38I GRGCYC 1 cut(s) 20
ErhI CCWWGG 1 cut(s) 88
FaeI CATG 1 cut(s) 328
FaiI YATR 4 cut(s) 29, 65, 246, 326
FatI CATG 1 cut(s) 324
FblI GTMKAC 1 cut(s) 181
FriOI GRGCYC 1 cut(s) 20
FspBI CTAG 1 cut(s) 147
GsuI CTGGAG 2 cut(s) 30, 237
Hin1II CATG 1 cut(s) 328
HincII GTYRAC 1 cut(s) 182
HindII GTYRAC 1 cut(s) 182
HinfI GANTC 4 cut(s) 79, 134, 153, 248
Hpy166II GTNNAC 1 cut(s) 182
Hpy188I TCNGA 2 cut(s) 78, 113
Hpy188III TCNNGA 5 cut(s) 9, 157, 218, 312, 351
Hpy8I GTNNAC 1 cut(s) 182
HpyAV CCTTC 2 cut(s) 30, 153
HpyCH4V TGCA 3 cut(s) 188, 224, 284
HpyF10VI GCNNNNNNNGC 1 cut(s) 59
HpyF3I CTNAG 1 cut(s) 75
Hsp92II CATG 1 cut(s) 328
Kzo9I GATC 1 cut(s) 317
LmnI GCTCC 2 cut(s) 15, 23
LpnPI CCDG 5 cut(s) 35, 170, 213, 240, 267
LweI GCATC 1 cut(s) 211
MaeI CTAG 1 cut(s) 147
MaeIII GTNAC 1 cut(s) 261
MalI GATC 1 cut(s) 319
MboI GATC 1 cut(s) 317
MboII GAAGA 5 cut(s) 16, 76, 270, 312, 327
MflI RGATCY 1 cut(s) 317
MhlI GDGCHC 2 cut(s) 20, 118
MlyI GAGTC 3 cut(s) 88, 128, 242
MnlI CCTC 2 cut(s) 5, 262
MroXI GAANNNNTTC 1 cut(s) 319
MspR9I CCNGG 1 cut(s) 228
Mva1269I GAATGC 1 cut(s) 284
MvaI CCWGG 1 cut(s) 228
MwoI GCNNNNNNNGC 1 cut(s) 59
NdeII GATC 1 cut(s) 317
NlaIII CATG 1 cut(s) 328
PaeR7I CTCGAG 1 cut(s) 310
PctI GAATGC 1 cut(s) 284
PdmI GAANNNNTTC 1 cut(s) 319
PfeI GAWTC 1 cut(s) 153
PleI GAGTC 3 cut(s) 87, 128, 242
PpsI GAGTC 3 cut(s) 87, 128, 242
Psp124BI GAGCTC 1 cut(s) 20
Psp6I CCWGG 1 cut(s) 226
PspGI CCWGG 1 cut(s) 226
PsuI RGATCY 1 cut(s) 317
SacI GAGCTC 1 cut(s) 20
SalI GTCGAC 1 cut(s) 180
Sau3AI GATC 1 cut(s) 317
SchI GAGTC 3 cut(s) 88, 128, 242
ScrFI CCNGG 1 cut(s) 228
SduI GDGCHC 2 cut(s) 20, 118
SetI ASST 5 cut(s) 20, 229, 237, 259, 348
SfaNI GCATC 1 cut(s) 211
Sfr274I CTCGAG 1 cut(s) 310
SlaI CTCGAG 1 cut(s) 310
SmlI CTYRAG 2 cut(s) 266, 310
SmoI CTYRAG 2 cut(s) 266, 310
SspMI CTAG 1 cut(s) 147
SstI GAGCTC 1 cut(s) 20
StyD4I CCNGG 1 cut(s) 226
StyI CCWWGG 1 cut(s) 88
TaqI TCGA 3 cut(s) 132, 181, 311
TfiI GAWTC 1 cut(s) 153
TscAI CASTG 1 cut(s) 182
TspDTI ATGAA 1 cut(s) 16
TspRI CASTG 1 cut(s) 182
XcmI CCANNNNNNNNNTGG 1 cut(s) 28
XhoI CTCGAG 1 cut(s) 310
XmiI GTMKAC 1 cut(s) 181
XmnI GAANNNNTTC 1 cut(s) 319
XspI CTAG 1 cut(s) 147
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.