Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8420433.1

Orthogroup ID

OG0017829

Physical Location & Seq

Genomic Coordinates Reverse (-)

1 .. 1397

Gene Structure 1397 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8420433.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1020 bp

atgtgggaagatggagatttgactatagtgggggagagagggatgaacctaagtgggggagaaaaacaaaggattcaactggcaagagcagtctatagtgattccgatgtatacatcttggatgatccttttagtgctgttgatgcacatacaggaacacacttgttcaagaaatgtctcttgcaacacttgtctctaaagactgtcgtctatgctacccaccaattagaatttctagaagcagcagaccttgtcttggtaattaaaggtggtcagattgctcagtctggaaaatatgaagatttgattgccgacctcaatggtgaacttgtcagacaaatggctgcacataggaaatcgttagaccaagttaacagatgccaaatagatgtttccttaaagattagacctcatcaagtaaatctaatagaggttgtggaagagaaagggcctttcaacaatggcaatcttccggaaaagagtcacgaagaagaagcagaaactggtccagtgaagttgagtgtttattccacctttgtaacttctgcttatggaggtgctcttgtcccagttatccttctctgccaagtcctcttccaggggctgcaaatgggcagcaactactggatggcttggggaacagagaaggagggtagggtcagtagagagcgattgatatgggtatttattatgttgtctggagggagctccatcttcatattggggagggcagtttttctggcaactattgctatacagactgctcagagtctcttccttagaatgataacttcagtattccgagcacccatctcatttttcgactccactccttctagccgaatcctgaataggtcttccacggatcaaagcactgtagacatggacattccttatagattagctggattagcatttgcactgatccaactaacaagcatcatagtccttatgtctcaagtggcttggcaagttttccttcttttcctcggggttcttggactctccatatggtatcaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000325 GO:0003674 GO:0003824 GO:0005215 GO:0005575 GO:0005576 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0005911 GO:0006810 GO:0008150 GO:0009506 GO:0010290 GO:0015399 GO:0015405 GO:0015431 GO:0016020 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0022804 GO:0022857 GO:0030054 GO:0031090 GO:0042623 GO:0042626 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043492 GO:0044422 GO:0044424 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0048046 GO:0051179 GO:0051234 GO:0055044 GO:0055085 GO:0071997 GO:0098588 GO:0098805

KEGG Pathways

Metabolic & Signaling

ko01523 ko01524 ko02010 ko04071 ko04976 ko04977 ko05206 map01523 map01524 map02010 map04071 map04976 map04977 map05206

Pfam Domains

Protein Families

ABC_membrane ABC_tran

Protein Analysis

340

Amino Acids

37.81

Weight (kDa)

5.68

Isoelectric Point (pI)

30.04

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0017829)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr7g0213701
rosa_laevigata	RLG00000006914
rosa_multiflora	Rmu_co8420433.1_g000001 Rmu_sc0007885.1_g000001
rosa_roxburghii	Rroxscaffold_3G00244840 Rroxscaffold_6G00423320 Rroxscaffold_7G00183790
rosa_rugosa	Rorug03G0123500
rosa_samantha	Rh2CG327200 Rh4CG331800 Rh4DG103900 Rh5BG175500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	2 cut(s)	111, 879
AccIII	TCCGGA	1 cut(s)	472
AclWI	GGATC	3 cut(s)	119, 873, 919
AcsI	RAATTY	1 cut(s)	230
AcuI	CTGAAG	1 cut(s)	777
AfiI	CCNNNNNNNGG	3 cut(s)	55, 256, 598
AgsI	TTSAA	3 cut(s)	77, 169, 457
AjnI	CCWGG	1 cut(s)	597
AjuI	GAANNNNNNNTTGG	2 cut(s)	216, 248
AluBI	AGCT	2 cut(s)	708, 905
AluI	AGCT	2 cut(s)	708, 905
Alw21I	GWGCWC	3 cut(s)	562, 710, 808
Alw26I	GTCTC	4 cut(s)	182, 198, 776, 960
AlwI	GGATC	3 cut(s)	119, 873, 919
AlwNI	CAGNNNCTG	2 cut(s)	503, 604
Ama87I	CYCGRG	1 cut(s)	989
Aor13HI	TCCGGA	1 cut(s)	472
AoxI	GGCC	1 cut(s)	449
ApeKI	GCWGC	4 cut(s)	242, 344, 604, 615
ApoI	RAATTY	1 cut(s)	230
AspS9I	GGNCC	2 cut(s)	449, 506
AsuHPI	GGTGA	1 cut(s)	335
AvaI	CYCGRG	1 cut(s)	989
AvaII	GGWCC	1 cut(s)	506
BanII	GRGCYC	1 cut(s)	710
BbsI	GAAGAC	1 cut(s)	849
Bbv12I	GWGCWC	3 cut(s)	562, 710, 808
BbvI	GCAGC	4 cut(s)	254, 331, 591, 627
BccI	CCATC	4 cut(s)	5, 622, 719, 818
BciT130I	CCWGG	1 cut(s)	599
BcoDI	GTCTC	4 cut(s)	182, 198, 776, 960
BfaI	CTAG	2 cut(s)	236, 837
BfmI	CTRYAG	3 cut(s)	24, 94, 876
BisI	GCNGC	4 cut(s)	243, 345, 605, 616
BlsI	GCNGC	4 cut(s)	244, 346, 606, 617
Bme1390I	CCNGG	1 cut(s)	599
Bme18I	GGWCC	1 cut(s)	506
BmeT110I	CYCGRG	1 cut(s)	989
BmgT120I	GGNCC	2 cut(s)	449, 506
BmrFI	CCNGG	1 cut(s)	599
BmrI	ACTGGG	1 cut(s)	563
BmsI	GCATC	3 cut(s)	133, 368, 948
BmuI	ACTGGG	1 cut(s)	563
BoxI	GACNNNNGTC	1 cut(s)	206
BpiI	GAAGAC	1 cut(s)	849
BpmI	CTGGAG	1 cut(s)	720
BpuEI	CTTGAG	1 cut(s)	942
BsaJI	CCNNGG	3 cut(s)	598, 861, 988
BsaWI	WCCGGW	1 cut(s)	472
Bsc4I	CCNNNNNNNGG	3 cut(s)	55, 256, 598
Bse1I	ACTGG	5 cut(s)	84, 508, 509, 569, 629
BseAI	TCCGGA	1 cut(s)	472
BseBI	CCWGG	1 cut(s)	599
BseDI	CCNNGG	3 cut(s)	598, 861, 988
BseGI	GGATG	3 cut(s)	48, 127, 633
BseLI	CCNNNNNNNGG	3 cut(s)	55, 256, 598
BseMII	CTCAG	2 cut(s)	296, 779
BseNI	ACTGG	5 cut(s)	84, 508, 509, 569, 629
BseXI	GCAGC	4 cut(s)	254, 331, 591, 627
BsgI	GTGCAG	1 cut(s)	330
BshFI	GGCC	1 cut(s)	451
BsiHKAI	GWGCWC	3 cut(s)	562, 710, 808
BsiHKCI	CYCGRG	1 cut(s)	989
BsiSI	CCGG	1 cut(s)	473
BslFI	GGGAC	1 cut(s)	551
BslI	CCNNNNNNNGG	3 cut(s)	55, 256, 598
BsmAI	GTCTC	4 cut(s)	182, 198, 776, 960
BsmFI	GGGAC	1 cut(s)	551
BsnI	GGCC	1 cut(s)	451
BsoBI	CYCGRG	1 cut(s)	989
Bsp1286I	GDGCHC	3 cut(s)	562, 710, 808
Bsp13I	TCCGGA	1 cut(s)	472
Bsp143I	GATC	3 cut(s)	124, 865, 924
BspANI	GGCC	1 cut(s)	451
BspCNI	CTCAG	2 cut(s)	295, 778
BspEI	TCCGGA	1 cut(s)	472
BspPI	GGATC	3 cut(s)	119, 873, 919
BsrI	ACTGG	5 cut(s)	84, 508, 509, 569, 629
BssECI	CCNNGG	3 cut(s)	598, 861, 988
BssMI	GATC	3 cut(s)	124, 865, 924
BssNAI	GTATAC	1 cut(s)	112
Bst1107I	GTATAC	1 cut(s)	112
Bst2UI	CCWGG	1 cut(s)	599
Bst4CI	ACNGT	2 cut(s)	205, 877
Bst6I	CTCTTC	3 cut(s)	435, 599, 779
BstAPI	GCANNNNNTGC	1 cut(s)	749
BstDEI	CTNAG	4 cut(s)	50, 282, 765, 779
BstDSI	CCRYGG	1 cut(s)	861
BstENI	CCTNNNNNAGG	1 cut(s)	596
BstF5I	GGATG	3 cut(s)	48, 127, 633
BstKTI	GATC	3 cut(s)	127, 868, 927
BstMAI	GTCTC	4 cut(s)	182, 198, 776, 960
BstMBI	GATC	3 cut(s)	124, 865, 924
BstMWI	GCNNNNNNNGC	3 cut(s)	143, 749, 911
BstNI	CCWGG	1 cut(s)	599
BstPAI	GACNNNNGTC	1 cut(s)	206
BstSCI	CCNGG	1 cut(s)	597
BstSFI	CTRYAG	3 cut(s)	24, 94, 876
BstV1I	GCAGC	4 cut(s)	254, 331, 591, 627
BstV2I	GAAGAC	1 cut(s)	849
BstZ17I	GTATAC	1 cut(s)	112
BsuRI	GGCC	1 cut(s)	451
BtgI	CCRYGG	1 cut(s)	861
BtsCI	GGATG	3 cut(s)	48, 127, 633
BtsIMutI	CAGTG	3 cut(s)	516, 873, 920
CaiI	CAGNNNCTG	2 cut(s)	503, 604
Cfr13I	GGNCC	2 cut(s)	449, 506
CviAII	CATG	1 cut(s)	883
CviJI	RGCY	8 cut(s)	344, 451, 604, 632, 708, 840, 905, 965
CviKI_1	RGCY	8 cut(s)	344, 451, 604, 632, 708, 840, 905, 965
DdeI	CTNAG	4 cut(s)	50, 282, 765, 779
DpnI	GATC	3 cut(s)	126, 867, 926
DpnII	GATC	3 cut(s)	124, 865, 924
Eam1104I	CTCTTC	3 cut(s)	435, 599, 779
EarI	CTCTTC	3 cut(s)	435, 599, 779
Ecl136II	GAGCTC	1 cut(s)	708
Eco24I	GRGCYC	1 cut(s)	710
Eco47I	GGWCC	1 cut(s)	506
Eco53kI	GAGCTC	1 cut(s)	708
Eco57I	CTGAAG	1 cut(s)	777
Eco88I	CYCGRG	1 cut(s)	989
EcoICRI	GAGCTC	1 cut(s)	708
EcoNI	CCTNNNNNAGG	1 cut(s)	596
EcoO109I	RGGNCCY	1 cut(s)	449
EcoRII	CCWGG	1 cut(s)	597
EcoT38I	GRGCYC	1 cut(s)	710
FaeI	CATG	1 cut(s)	886
FalI	AAGNNNNNCTT	2 cut(s)	963, 995
FaqI	GGGAC	1 cut(s)	551
FatI	CATG	1 cut(s)	882
FauNDI	CATATG	1 cut(s)	1010
FblI	GTMKAC	2 cut(s)	111, 879
Fnu4HI	GCNGC	4 cut(s)	243, 345, 605, 616
FokI	GGATG	3 cut(s)	55, 134, 640
FriOI	GRGCYC	1 cut(s)	710
Fsp4HI	GCNGC	4 cut(s)	243, 345, 605, 616
FspBI	CTAG	2 cut(s)	236, 837
GluI	GCNGC	4 cut(s)	243, 345, 605, 616
GsuI	CTGGAG	1 cut(s)	720
HaeIII	GGCC	1 cut(s)	451
HapII	CCGG	1 cut(s)	473
Hin1II	CATG	1 cut(s)	886
HincII	GTYRAC	1 cut(s)	373
HindII	GTYRAC	1 cut(s)	373
HinfI	GANTC	7 cut(s)	73, 101, 481, 769, 824, 843, 1002
HpaI	GTTAAC	1 cut(s)	373
HpaII	CCGG	1 cut(s)	473
HphI	GGTGA	1 cut(s)	335
Hpy166II	GTNNAC	4 cut(s)	112, 326, 373, 880
Hpy188I	TCNGA	5 cut(s)	106, 276, 335, 768, 803
Hpy188III	TCNNGA	7 cut(s)	169, 236, 288, 473, 485, 699, 847
Hpy8I	GTNNAC	4 cut(s)	112, 326, 373, 880
HpyAV	CCTTC	4 cut(s)	587, 640, 843, 989
HpyCH4III	ACNGT	2 cut(s)	205, 877
HpyCH4V	TGCA	5 cut(s)	146, 184, 347, 607, 920
HpyF10VI	GCNNNNNNNGC	3 cut(s)	143, 749, 911
HpyF3I	CTNAG	4 cut(s)	50, 282, 765, 779
Hsp92II	CATG	1 cut(s)	886
Kpn2I	TCCGGA	1 cut(s)	472
KspAI	GTTAAC	1 cut(s)	373
Kzo9I	GATC	3 cut(s)	124, 865, 924
LmnI	GCTCC	2 cut(s)	705, 713
Lsp1109I	GCAGC	4 cut(s)	254, 331, 591, 627
LweI	GCATC	3 cut(s)	133, 368, 948
MaeI	CTAG	2 cut(s)	236, 837
MaeIII	GTNAC	2 cut(s)	482, 538
MalI	GATC	3 cut(s)	126, 867, 926
MboI	GATC	3 cut(s)	124, 865, 924
MhlI	GDGCHC	3 cut(s)	562, 710, 808
MluCI	AATT	3 cut(s)	224, 230, 261
MlyI	GAGTC	4 cut(s)	490, 778, 818, 996
MmeI	TCCRAC	1 cut(s)	952
MroI	TCCGGA	1 cut(s)	472
MseI	TTAA	3 cut(s)	264, 372, 398
MspI	CCGG	1 cut(s)	473
MspR9I	CCNGG	1 cut(s)	599
MvaI	CCWGG	1 cut(s)	599
MwoI	GCNNNNNNNGC	3 cut(s)	143, 749, 911
NdeI	CATATG	1 cut(s)	1010
NdeII	GATC	3 cut(s)	124, 865, 924
NlaIII	CATG	1 cut(s)	886
NmuCI	GTSAC	1 cut(s)	482
PfeI	GAWTC	3 cut(s)	73, 101, 843
PflFI	GACNNNGTC	1 cut(s)	251
PkrI	GCNGC	4 cut(s)	244, 346, 606, 617
PleI	GAGTC	4 cut(s)	489, 777, 818, 996
PpsI	GAGTC	4 cut(s)	489, 777, 818, 996
PshAI	GACNNNNGTC	1 cut(s)	206
Psp124BI	GAGCTC	1 cut(s)	710
Psp6I	CCWGG	1 cut(s)	597
PspGI	CCWGG	1 cut(s)	597
PspPI	GGNCC	2 cut(s)	449, 506
PstNI	CAGNNNCTG	2 cut(s)	503, 604
PsyI	GACNNNGTC	1 cut(s)	251
SacI	GAGCTC	1 cut(s)	710
SaqAI	TTAA	3 cut(s)	264, 372, 398
SatI	GCNGC	4 cut(s)	243, 345, 605, 616
Sau3AI	GATC	3 cut(s)	124, 865, 924
Sau96I	GGNCC	2 cut(s)	449, 506
SchI	GAGTC	4 cut(s)	490, 778, 818, 996
ScrFI	CCNGG	1 cut(s)	599
SduI	GDGCHC	3 cut(s)	562, 710, 808
SfaNI	GCATC	3 cut(s)	133, 368, 948
SfcI	CTRYAG	3 cut(s)	24, 94, 876
SinI	GGWCC	1 cut(s)	506
SmlI	CTYRAG	1 cut(s)	957
SmoI	CTYRAG	1 cut(s)	957
Sse9I	AATT	3 cut(s)	224, 230, 261
SspMI	CTAG	2 cut(s)	236, 837
SstI	GAGCTC	1 cut(s)	710
StyD4I	CCNGG	1 cut(s)	597
TaaI	ACNGT	2 cut(s)	205, 877
TaqI	TCGA	1 cut(s)	822
TasI	AATT	3 cut(s)	224, 230, 261
TfiI	GAWTC	3 cut(s)	73, 101, 843
Tru1I	TTAA	3 cut(s)	264, 372, 398
Tru9I	TTAA	3 cut(s)	264, 372, 398
TscAI	CASTG	3 cut(s)	516, 880, 927
TseFI	GTSAC	1 cut(s)	482
TseI	GCWGC	4 cut(s)	242, 344, 604, 615
Tsp45I	GTSAC	1 cut(s)	482
TspDTI	ATGAA	3 cut(s)	59, 312, 706
TspGWI	ACGGA	1 cut(s)	878
TspRI	CASTG	3 cut(s)	516, 880, 927
Tth111I	GACNNNGTC	1 cut(s)	251
VpaK11BI	GGWCC	1 cut(s)	506
XagI	CCTNNNNNAGG	1 cut(s)	596
XapI	RAATTY	1 cut(s)	230
XbaI	TCTAGA	1 cut(s)	235
XcmI	CCANNNNNNNNNTGG	1 cut(s)	718
XmiI	GTMKAC	2 cut(s)	111, 879
XspI	CTAG	2 cut(s)	236, 837

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.