Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0007885.1

Orthogroup ID

OG0017829

Physical Location & Seq

Genomic Coordinates Forward (+)

594 .. 896

Gene Structure 303 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0007885.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 303 bp

atggcaagcaactactggattgcttgggcagcagggaaggaaaacactttcaccagaggaaacatgtggattttcgctcttttatctggtggaagctctgtcttcatcttgggaagggcggtcttcctttcagctattactattgaaacttcccagaatctctttgttgggatgattacttcagttttccgagcgcctatggcatttttcgactctacaccttctagtcgaatcctcactagggttagtatacatataatctctgcggcttgcaagttctttattaatgaggttctggcatga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000325 GO:0003674 GO:0003824 GO:0005215 GO:0005575 GO:0005576 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0005911 GO:0006810 GO:0008150 GO:0009506 GO:0010290 GO:0015399 GO:0015405 GO:0015431 GO:0016020 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0022804 GO:0022857 GO:0030054 GO:0031090 GO:0042623 GO:0042626 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043492 GO:0044422 GO:0044424 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0048046 GO:0051179 GO:0051234 GO:0055044 GO:0055085 GO:0071997 GO:0098588 GO:0098805

KEGG Pathways

Metabolic & Signaling

ko01523 ko01524 ko02010 ko04071 ko04976 ko04977 ko05206 map01523 map01524 map02010 map04071 map04976 map04977 map05206

Pfam Domains

Protein Families

ABC_membrane ABC_tran

Protein Analysis

100

Amino Acids

10.99

Weight (kDa)

9.77

Isoelectric Point (pI)

40.28

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0017829)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr7g0213701
rosa_laevigata	RLG00000006914
rosa_multiflora	Rmu_co8420433.1_g000001 Rmu_sc0007885.1_g000001
rosa_roxburghii	Rroxscaffold_3G00244840 Rroxscaffold_6G00423320 Rroxscaffold_7G00183790
rosa_rugosa	Rorug03G0123500
rosa_samantha	Rh2CG327200 Rh4CG331800 Rh4DG103900 Rh5BG175500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	250
AciI	CCGC	2 cut(s)	119, 266
AcuI	CTGAAG	1 cut(s)	165
AfiI	CCNNNNNNNGG	1 cut(s)	241
AflIII	ACRYGT	1 cut(s)	63
AgsI	TTSAA	1 cut(s)	146
AluBI	AGCT	2 cut(s)	96, 134
AluI	AGCT	2 cut(s)	96, 134
ApeKI	GCWGC	1 cut(s)	29
AseI	ATTAAT	1 cut(s)	285
AspLEI	GCGC	1 cut(s)	196
AsuHPI	GGTGA	1 cut(s)	43
BbsI	GAAGAC	2 cut(s)	94, 115
BbvI	GCAGC	1 cut(s)	41
BfaI	CTAG	2 cut(s)	225, 240
BfoI	RGCGCY	1 cut(s)	197
BisI	GCNGC	2 cut(s)	30, 267
BlsI	GCNGC	2 cut(s)	31, 268
BpiI	GAAGAC	2 cut(s)	94, 115
Bsc4I	CCNNNNNNNGG	1 cut(s)	241
Bse1I	ACTGG	1 cut(s)	20
BseGI	GGATG	1 cut(s)	177
BseLI	CCNNNNNNNGG	1 cut(s)	241
BseNI	ACTGG	1 cut(s)	20
BseXI	GCAGC	1 cut(s)	41
BslI	CCNNNNNNNGG	1 cut(s)	241
BspACI	CCGC	2 cut(s)	119, 266
BsrI	ACTGG	1 cut(s)	20
BssNAI	GTATAC	1 cut(s)	251
Bst1107I	GTATAC	1 cut(s)	251
BstC8I	GCNNGC	2 cut(s)	7, 271
BstF5I	GGATG	1 cut(s)	177
BstH2I	RGCGCY	1 cut(s)	197
BstHHI	GCGC	1 cut(s)	196
BstMWI	GCNNNNNNNGC	2 cut(s)	29, 200
BstNSI	RCATGY	1 cut(s)	67
BstV1I	GCAGC	1 cut(s)	41
BstV2I	GAAGAC	2 cut(s)	94, 115
BstZ17I	GTATAC	1 cut(s)	251
BtsCI	GGATG	1 cut(s)	177
Cac8I	GCNNGC	2 cut(s)	7, 271
CfoI	GCGC	1 cut(s)	196
CviAII	CATG	2 cut(s)	64, 300
CviJI	RGCY	3 cut(s)	96, 134, 269
CviKI_1	RGCY	3 cut(s)	96, 134, 269
Eco57I	CTGAAG	1 cut(s)	165
FaeI	CATG	2 cut(s)	67, 303
FaiI	YATR	6 cut(s)	65, 200, 251, 255, 257, 301
FatI	CATG	2 cut(s)	63, 299
FblI	GTMKAC	1 cut(s)	250
Fnu4HI	GCNGC	2 cut(s)	30, 267
FokI	GGATG	1 cut(s)	184
Fsp4HI	GCNGC	2 cut(s)	30, 267
FspBI	CTAG	2 cut(s)	225, 240
GlaI	GCGC	1 cut(s)	195
GluI	GCNGC	2 cut(s)	30, 267
HaeII	RGCGCY	1 cut(s)	197
HhaI	GCGC	1 cut(s)	196
Hin1II	CATG	2 cut(s)	67, 303
Hin6I	GCGC	1 cut(s)	194
HinP1I	GCGC	1 cut(s)	194
HinfI	GANTC	3 cut(s)	157, 212, 231
HphI	GGTGA	1 cut(s)	43
Hpy166II	GTNNAC	1 cut(s)	251
Hpy188I	TCNGA	1 cut(s)	191
Hpy8I	GTNNAC	1 cut(s)	251
HpyAV	CCTTC	3 cut(s)	31, 108, 231
HpyCH4V	TGCA	1 cut(s)	273
HpyF10VI	GCNNNNNNNGC	2 cut(s)	29, 200
Hsp92II	CATG	2 cut(s)	67, 303
HspAI	GCGC	1 cut(s)	194
LpnPI	CCDG	5 cut(s)	18, 67, 72, 167, 281
Lsp1109I	GCAGC	1 cut(s)	41
MaeI	CTAG	2 cut(s)	225, 240
MboII	GAAGA	2 cut(s)	94, 115
MlyI	GAGTC	1 cut(s)	206
MnlI	CCTC	3 cut(s)	50, 245, 283
MseI	TTAA	1 cut(s)	285
MwoI	GCNNNNNNNGC	2 cut(s)	29, 200
NlaIII	CATG	2 cut(s)	67, 303
NspI	RCATGY	1 cut(s)	67
PciI	ACATGT	1 cut(s)	63
PfeI	GAWTC	2 cut(s)	157, 231
PkrI	GCNGC	2 cut(s)	31, 268
PleI	GAGTC	1 cut(s)	206
PpsI	GAGTC	1 cut(s)	206
PscI	ACATGT	1 cut(s)	63
PshBI	ATTAAT	1 cut(s)	285
SaqAI	TTAA	1 cut(s)	285
SatI	GCNGC	2 cut(s)	30, 267
SchI	GAGTC	1 cut(s)	206
SetI	ASST	4 cut(s)	98, 136, 223, 294
SsiI	CCGC	2 cut(s)	119, 266
SspMI	CTAG	2 cut(s)	225, 240
TaqI	TCGA	2 cut(s)	210, 229
TauI	GCSGC	1 cut(s)	269
TfiI	GAWTC	2 cut(s)	157, 231
Tru1I	TTAA	1 cut(s)	285
Tru9I	TTAA	1 cut(s)	285
TseI	GCWGC	1 cut(s)	29
TspDTI	ATGAA	1 cut(s)	94
VspI	ATTAAT	1 cut(s)	285
XceI	RCATGY	1 cut(s)	67
XmiI	GTMKAC	1 cut(s)	250
XspI	CTAG	2 cut(s)	225, 240

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.