Rroxscaffold_6G00423320

AP-4 complex subunit

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000006
Physical Location & Seq
Reverse (-)
44434557 .. 44436272
1716 bp
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UTR
Exon/CDS
Intron
Rroxscaffold_6G00423320.1

Sequence Viewer

Length: 162 bp
ATGTTAAGAAAGATAGAGAAGAAAAGAGGAAGAAATAGGAAGAGGGAAGAAGTCAAGGTGGAGTCATATTTGCGCATCATTGGAGAGCCAAAGCTTCCGTCTGTATTTCTTCAAGTACAGTGCCCTGTCAATTCTCTTCATCCTATTTGTGCTTTTATGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
Pfam Domains
Protein Families

Protein Analysis

53

Amino Acids

6.27

Weight (kDa)

10.14

Isoelectric Point (pI)

62.34

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 74
AfaI GTAC 1 cut(s) 117
AgsI TTSAA 1 cut(s) 113
AluBI AGCT 1 cut(s) 94
AluI AGCT 1 cut(s) 94
ArsI GACNNNNNNTTYG 2 cut(s) 83, 115
AspLEI GCGC 1 cut(s) 75
BaeGI GKGCMC 1 cut(s) 125
BmsI GCATC 1 cut(s) 84
BseGI GGATG 1 cut(s) 139
BseSI GKGCMC 1 cut(s) 125
Bsp1286I GDGCHC 1 cut(s) 125
Bst4CI ACNGT 1 cut(s) 120
Bst6I CTCTTC 2 cut(s) 35, 141
BstF5I GGATG 1 cut(s) 139
BstHHI GCGC 1 cut(s) 75
BstSLI GKGCMC 1 cut(s) 125
BtsCI GGATG 1 cut(s) 139
BtsIMutI CAGTG 1 cut(s) 125
CfoI GCGC 1 cut(s) 75
Csp6I GTAC 1 cut(s) 116
CviJI RGCY 2 cut(s) 88, 94
CviKI_1 RGCY 2 cut(s) 88, 94
CviQI GTAC 1 cut(s) 116
Eam1104I CTCTTC 2 cut(s) 35, 141
EarI CTCTTC 2 cut(s) 35, 141
FaiI YATR 2 cut(s) 67, 158
FokI GGATG 1 cut(s) 126
FspI TGCGCA 1 cut(s) 74
GlaI GCGC 1 cut(s) 74
HhaI GCGC 1 cut(s) 75
Hin6I GCGC 1 cut(s) 73
HinP1I GCGC 1 cut(s) 73
HindIII AAGCTT 1 cut(s) 92
HinfI GANTC 1 cut(s) 62
HpyCH4III ACNGT 1 cut(s) 120
HspAI GCGC 1 cut(s) 73
LpnPI CCDG 1 cut(s) 138
LweI GCATC 1 cut(s) 84
MboII GAAGA 6 cut(s) 31, 42, 52, 59, 101, 128
MhlI GDGCHC 1 cut(s) 125
MluCI AATT 1 cut(s) 130
MlyI GAGTC 1 cut(s) 71
MnlI CCTC 2 cut(s) 20, 36
MseI TTAA 1 cut(s) 5
NsbI TGCGCA 1 cut(s) 74
PleI GAGTC 1 cut(s) 70
PpsI GAGTC 1 cut(s) 70
RsaI GTAC 1 cut(s) 117
RsaNI GTAC 1 cut(s) 116
SaqAI TTAA 1 cut(s) 5
SchI GAGTC 1 cut(s) 71
SduI GDGCHC 1 cut(s) 125
SetI ASST 2 cut(s) 60, 96
SfaNI GCATC 1 cut(s) 84
SgeI CNNG 3 cut(s) 67, 125, 137
Sse9I AATT 1 cut(s) 130
TaaI ACNGT 1 cut(s) 120
TasI AATT 1 cut(s) 130
TatI WGTACW 1 cut(s) 115
Tru1I TTAA 1 cut(s) 5
Tru9I TTAA 1 cut(s) 5
TscAI CASTG 1 cut(s) 125
TspDTI ATGAA 1 cut(s) 128
TspGWI ACGGA 1 cut(s) 87
TspRI CASTG 1 cut(s) 125
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.