Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0010629

Physical Location & Seq

Genomic Coordinates Reverse (-)

35571627 .. 35572529

Gene Structure 903 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ19477

Sequence Viewer

CDS Protein Promoter (2k)

Length: 549 bp

ATGAGTTATGGGGGGCATACAGGTTCTTTTGGATGTGAGGCTTCCATATCGACAAGATGTTGTGACTTTGCGAAAGTGATTGATATCATTGATGTCAGTCTACTGGAGAGACCAGATTCATGTAATTCAGTTTTCCTCGATTGCTTGTATAGGCATGGAGTTACCCAGTCAGTTTTGACGTATGAAGCTATCAGTCAATTGCTATGGAGAAGAATATGTCCTGGACTTCCATTGGCAATAAGAATGTTGTACTTGATGTTAGGTTCATTAATTAACTGTTTTGATTGGGAGCTTGAAGATGGAGTTGTACCCGAGACTATGAACATGGAAGATAAGTTTGGCCTCACCTTACAAATGGCTCAGCCTCTGAGAGTGTGCCTAAGAAGTTATAGGAGGAGCCGAGGAGGATTACCTTTTGTATTTTCCCTTGGGATTTGGAACCTTTTTCTTGGCTCCTCGTACTCCATCTCTTCTTTCAATTTTCTCTTCCATGCGTGTAGCGCATTTTTTTTGTTTTTCTTTTTTTCACCTTATAAAGGAAGGTTATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004497 GO:0005575 GO:0008150 GO:0008152 GO:0009058 GO:0016020 GO:0016491 GO:0016705 GO:0016709 GO:0019748 GO:0044550 GO:0055114

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

p450

Protein Analysis

182

Amino Acids

20.69

Weight (kDa)

6.79

Isoelectric Point (pI)

51.9

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0010629)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr7g0217641 RchiOBHm_Chr7g0217651
rosa_laevigata	RLG00000002410 RLG00000002411 RLG00000002452 RLG00000019774
rosa_multiflora	Rmu_sc0000379.1_g000014 Rmu_sc0001300.1_g000006 Rmu_sc0001300.1_g000007 Rmu_sc0002029.1_g000025
rosa_roxburghii	Rroxscaffold_3G00241370
rosa_rugosa	Rorug07G0170600 Rorug07G0170600
rosa_samantha	Rh7AG310700 Rh7AG310800 Rh7AG316100 Rh7BG302300 Rh7BG302400 Rh7CG329700 Rh7DG314900
rosa_wichuraiana	Rw7G026700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	534, 547
AccI	GTMKAC	1 cut(s)	100
AfaI	GTAC	3 cut(s)	251, 309, 461
AfiI	CCNNNNNNNGG	1 cut(s)	536
AgsI	TTSAA	2 cut(s)	296, 478
AjnI	CCWGG	1 cut(s)	220
AjuI	GAANNNNNNNTTGG	2 cut(s)	321, 353
AluBI	AGCT	2 cut(s)	188, 292
AluI	AGCT	2 cut(s)	188, 292
Alw26I	GTCTC	2 cut(s)	103, 308
AlwNI	CAGNNNCTG	1 cut(s)	367
Ama87I	CYCGRG	1 cut(s)	311
AoxI	GGCC	1 cut(s)	340
AseI	ATTAAT	1 cut(s)	269
AspLEI	GCGC	1 cut(s)	503
AsuHPI	GGTGA	2 cut(s)	337, 519
AvaI	CYCGRG	1 cut(s)	311
BccI	CCATC	2 cut(s)	293, 473
BciT130I	CCWGG	1 cut(s)	222
BcoDI	GTCTC	2 cut(s)	103, 308
BlpI	GCTNAGC	1 cut(s)	360
Bme1390I	CCNGG	1 cut(s)	222
BmeT110I	CYCGRG	1 cut(s)	311
BmiI	GGNNCC	3 cut(s)	398, 440, 454
BmrFI	CCNGG	1 cut(s)	222
BmrI	ACTGGG	1 cut(s)	160
BmuI	ACTGGG	1 cut(s)	160
BpmI	CTGGAG	1 cut(s)	125
Bpu1102I	GCTNAGC	1 cut(s)	360
BsaBI	GATNNNNATC	1 cut(s)	83
BsaI	GGTCTC	1 cut(s)	103
BsaJI	CCNNGG	2 cut(s)	400, 427
Bsc4I	CCNNNNNNNGG	1 cut(s)	536
Bse1I	ACTGG	2 cut(s)	108, 166
Bse8I	GATNNNNATC	1 cut(s)	83
BseBI	CCWGG	1 cut(s)	222
BseDI	CCNNGG	2 cut(s)	400, 427
BseGI	GGATG	1 cut(s)	38
BseJI	GATNNNNATC	1 cut(s)	83
BseLI	CCNNNNNNNGG	1 cut(s)	536
BseMII	CTCAG	2 cut(s)	359, 374
BseNI	ACTGG	2 cut(s)	108, 166
BseRI	GAGGAG	3 cut(s)	409, 417, 445
BshFI	GGCC	1 cut(s)	342
BsiHKCI	CYCGRG	1 cut(s)	311
BslI	CCNNNNNNNGG	1 cut(s)	536
BsmAI	GTCTC	2 cut(s)	103, 308
BsnI	GGCC	1 cut(s)	342
Bso31I	GGTCTC	1 cut(s)	103
BsoBI	CYCGRG	1 cut(s)	311
Bsp1720I	GCTNAGC	1 cut(s)	360
BspANI	GGCC	1 cut(s)	342
BspCNI	CTCAG	2 cut(s)	360, 373
BspLI	GGNNCC	3 cut(s)	398, 440, 454
BspTNI	GGTCTC	1 cut(s)	103
BsrI	ACTGG	2 cut(s)	108, 166
BssECI	CCNNGG	2 cut(s)	400, 427
BssT1I	CCWWGG	1 cut(s)	427
Bst2UI	CCWGG	1 cut(s)	222
Bst4CI	ACNGT	1 cut(s)	278
Bst6I	CTCTTC	2 cut(s)	475, 491
BstDEI	CTNAG	3 cut(s)	360, 368, 380
BstENI	CCTNNNNNAGG	1 cut(s)	534
BstF5I	GGATG	1 cut(s)	38
BstHHI	GCGC	1 cut(s)	503
BstMAI	GTCTC	2 cut(s)	103, 308
BstMWI	GCNNNNNNNGC	1 cut(s)	500
BstNI	CCWGG	1 cut(s)	222
BstSCI	CCNGG	1 cut(s)	220
BsuRI	GGCC	1 cut(s)	342
BtsCI	GGATG	1 cut(s)	38
CaiI	CAGNNNCTG	1 cut(s)	367
CfoI	GCGC	1 cut(s)	503
Csp6I	GTAC	3 cut(s)	250, 308, 460
CviAII	CATG	4 cut(s)	120, 155, 325, 491
CviJI	RGCY	8 cut(s)	41, 188, 292, 342, 359, 364, 399, 453
CviKI_1	RGCY	8 cut(s)	41, 188, 292, 342, 359, 364, 399, 453
CviQI	GTAC	3 cut(s)	250, 308, 460
DdeI	CTNAG	3 cut(s)	360, 368, 380
Eam1104I	CTCTTC	2 cut(s)	475, 491
EarI	CTCTTC	2 cut(s)	475, 491
Eco130I	CCWWGG	1 cut(s)	427
Eco31I	GGTCTC	1 cut(s)	103
Eco32I	GATATC	1 cut(s)	85
Eco88I	CYCGRG	1 cut(s)	311
EcoNI	CCTNNNNNAGG	1 cut(s)	534
EcoRII	CCWGG	1 cut(s)	220
EcoRV	GATATC	1 cut(s)	85
EcoT14I	CCWWGG	1 cut(s)	427
ErhI	CCWWGG	1 cut(s)	427
FaeI	CATG	4 cut(s)	123, 158, 328, 494
FatI	CATG	4 cut(s)	119, 154, 324, 490
FblI	GTMKAC	1 cut(s)	100
FokI	GGATG	1 cut(s)	45
GlaI	GCGC	1 cut(s)	502
GsuI	CTGGAG	1 cut(s)	125
HaeIII	GGCC	1 cut(s)	342
HhaI	GCGC	1 cut(s)	503
Hin1II	CATG	4 cut(s)	123, 158, 328, 494
Hin6I	GCGC	1 cut(s)	501
HinP1I	GCGC	1 cut(s)	501
HinfI	GANTC	1 cut(s)	116
HphI	GGTGA	2 cut(s)	337, 519
Hpy166II	GTNNAC	1 cut(s)	101
Hpy188I	TCNGA	1 cut(s)	369
Hpy8I	GTNNAC	1 cut(s)	101
HpyAV	CCTTC	1 cut(s)	534
HpyCH4III	ACNGT	1 cut(s)	278
HpyCH4IV	ACGT	1 cut(s)	179
HpyF10VI	GCNNNNNNNGC	1 cut(s)	500
HpyF3I	CTNAG	3 cut(s)	360, 368, 380
HpySE526I	ACGT	1 cut(s)	179
Hsp92II	CATG	4 cut(s)	123, 158, 328, 494
HspAI	GCGC	1 cut(s)	501
LmnI	GCTCC	3 cut(s)	289, 396, 458
LpnPI	CCDG	6 cut(s)	6, 89, 126, 179, 207, 234
MaeII	ACGT	1 cut(s)	179
MaeIII	GTNAC	2 cut(s)	62, 160
MboII	GAAGA	5 cut(s)	222, 308, 341, 462, 478
MfeI	CAATTG	1 cut(s)	197
MluCI	AATT	4 cut(s)	124, 197, 270, 478
MnlI	CCTC	8 cut(s)	31, 146, 353, 375, 387, 395, 398, 466
MseI	TTAA	2 cut(s)	269, 273
MspR9I	CCNGG	1 cut(s)	222
MunI	CAATTG	1 cut(s)	197
MvaI	CCWGG	1 cut(s)	222
MwoI	GCNNNNNNNGC	1 cut(s)	500
NlaIII	CATG	4 cut(s)	123, 158, 328, 494
NlaIV	GGNNCC	3 cut(s)	398, 440, 454
NmeAIII	GCCGAG	1 cut(s)	425
NmuCI	GTSAC	1 cut(s)	62
PacI	TTAATTAA	1 cut(s)	273
PfeI	GAWTC	1 cut(s)	116
PfoI	TCCNGGA	1 cut(s)	220
PshBI	ATTAAT	1 cut(s)	269
PsiI	TTATAA	2 cut(s)	534, 547
Psp6I	CCWGG	1 cut(s)	220
PspGI	CCWGG	1 cut(s)	220
PspN4I	GGNNCC	3 cut(s)	398, 440, 454
PstNI	CAGNNNCTG	1 cut(s)	367
RsaI	GTAC	3 cut(s)	251, 309, 461
RsaNI	GTAC	3 cut(s)	250, 308, 460
SaqAI	TTAA	2 cut(s)	269, 273
ScrFI	CCNGG	1 cut(s)	222
Sse9I	AATT	4 cut(s)	124, 197, 270, 478
StyD4I	CCNGG	1 cut(s)	220
StyI	CCWWGG	1 cut(s)	427
TaaI	ACNGT	1 cut(s)	278
TaiI	ACGT	1 cut(s)	182
TaqI	TCGA	2 cut(s)	50, 138
TasI	AATT	4 cut(s)	124, 197, 270, 478
TatI	WGTACW	1 cut(s)	249
TfiI	GAWTC	1 cut(s)	116
Tru1I	TTAA	2 cut(s)	269, 273
Tru9I	TTAA	2 cut(s)	269, 273
TseFI	GTSAC	1 cut(s)	62
Tsp45I	GTSAC	1 cut(s)	62
TspDTI	ATGAA	4 cut(s)	108, 198, 255, 335
VspI	ATTAAT	1 cut(s)	269
XagI	CCTNNNNNAGG	1 cut(s)	534
XmiI	GTMKAC	1 cut(s)	100

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.