Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7B

Orthogroup ID

OG0010629

Physical Location & Seq

Genomic Coordinates Reverse (-)

28708211 .. 28708771

Gene Structure 561 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7BG302400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 561 bp

ATGGCGAATGATAGTACCCAAGATGATGAACTGAAATTGTTCCCAACTGATGTTGGAGAAGGTGATTACAAATATCAGTACCAAATAGGTTCTACAACTTATTTTGAATCGCATGGGAGTACCCAAAGTACAGAGGAGAGCAGCAGCAATGCAAATAATACTTCCATTTACGGAGTAATACACATACCAGATCTCCATTTACTGAAGGAGGATGATTTGAAACTCATGGGACAGTTTATAAAGGACTACAGAGTACCTCCTGAGATCTGGTTCTCACTTCTGACAAGAATCAGATATTCTCGTGCCTTCCGTTCACCAAGAACCTGCAAGCTTGGCCTTCTTGCATTTACTGTGCTTGTTCATGCTAGTGATGCTCTTGAAGAACTTCTGTCTTTCTTTGCTAATGAGCCAGACTATATTAATAGATCAATTAGAATTGTGCCATCAGAAGAAGTAGTTTCTGGAACCATCAGAACAAATACAATGCTTGCCTTATCGAAGATCATGCACCAACCCTCTTGTCCACTGCATCACATTGTTAGTGTTTCTGCTTCTGCATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004842 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005739 GO:0005829 GO:0006464 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0032446 GO:0036211 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0061630 GO:0061659 GO:0070647 GO:0071704 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko04120 map04120

Pfam Domains

Protein Families

DUF4414 DUF908 DUF913 HECT UBA

Protein Analysis

186

Amino Acids

20.95

Weight (kDa)

5.43

Isoelectric Point (pI)

44.26

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DUF908	PF06012	33 - 170	9.9e-13	Domain of Unknown Function (DUF908)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0010629)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr7g0217641 RchiOBHm_Chr7g0217651
rosa_laevigata	RLG00000002410 RLG00000002411 RLG00000002452 RLG00000019774
rosa_multiflora	Rmu_sc0000379.1_g000014 Rmu_sc0001300.1_g000006 Rmu_sc0001300.1_g000007 Rmu_sc0002029.1_g000025
rosa_roxburghii	Rroxscaffold_3G00241370
rosa_rugosa	Rorug07G0170600 Rorug07G0170600
rosa_samantha	Rh7AG310700 Rh7AG310800 Rh7AG316100 Rh7BG302300 Rh7BG302400 Rh7CG329700 Rh7DG314900
rosa_wichuraiana	Rw7G026700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	239
Acc36I	ACCTGC	1 cut(s)	332
AcuI	CTGAAG	1 cut(s)	224
AfaI	GTAC	5 cut(s)	16, 80, 121, 130, 255
AgsI	TTSAA	3 cut(s)	107, 220, 380
AluBI	AGCT	1 cut(s)	331
AluI	AGCT	1 cut(s)	331
AoxI	GGCC	1 cut(s)	334
ApeKI	GCWGC	2 cut(s)	141, 144
AseI	ATTAAT	1 cut(s)	420
Asp700I	GAANNNNTTC	2 cut(s)	38, 384
AsuHPI	GGTGA	2 cut(s)	74, 306
BauI	CACGAG	1 cut(s)	300
BbvI	GCAGC	2 cut(s)	153, 156
BccI	CCATC	2 cut(s)	451, 476
BcgI	CGANNNNNNTGC	2 cut(s)	487, 521
BfaI	CTAG	1 cut(s)	366
BfmI	CTRYAG	1 cut(s)	247
BfuAI	ACCTGC	1 cut(s)	332
BglII	AGATCT	2 cut(s)	190, 264
BisI	GCNGC	2 cut(s)	142, 145
BlsI	GCNGC	2 cut(s)	143, 146
BmiI	GGNNCC	1 cut(s)	466
BmsI	GCATC	2 cut(s)	361, 538
BsaXI	ACNNNNNCTCC	2 cut(s)	177, 207
Bse3DI	GCAATG	1 cut(s)	154
BseGI	GGATG	1 cut(s)	217
BseMI	GCAATG	1 cut(s)	154
BseMII	CTCAG	1 cut(s)	252
BseRI	GAGGAG	1 cut(s)	149
BseXI	GCAGC	2 cut(s)	153, 156
BshFI	GGCC	1 cut(s)	336
BslFI	GGGAC	1 cut(s)	243
BsmFI	GGGAC	1 cut(s)	243
BsnI	GGCC	1 cut(s)	336
Bsp143I	GATC	4 cut(s)	190, 264, 425, 501
BspANI	GGCC	1 cut(s)	336
BspCNI	CTCAG	1 cut(s)	253
BspLI	GGNNCC	1 cut(s)	466
BspMI	ACCTGC	1 cut(s)	332
BsrDI	GCAATG	1 cut(s)	154
BssMI	GATC	4 cut(s)	190, 264, 425, 501
BssSI	CACGAG	1 cut(s)	300
Bst2BI	CACGAG	1 cut(s)	300
Bst4CI	ACNGT	2 cut(s)	234, 352
BstC8I	GCNNGC	2 cut(s)	329, 489
BstDEI	CTNAG	1 cut(s)	261
BstF5I	GGATG	1 cut(s)	217
BstKTI	GATC	4 cut(s)	193, 267, 428, 504
BstMBI	GATC	4 cut(s)	190, 264, 425, 501
BstMWI	GCNNNNNNNGC	2 cut(s)	333, 371
BstSFI	CTRYAG	1 cut(s)	247
BstV1I	GCAGC	2 cut(s)	153, 156
BstX2I	RGATCY	2 cut(s)	190, 264
BstYI	RGATCY	2 cut(s)	190, 264
BsuRI	GGCC	1 cut(s)	336
BtsCI	GGATG	1 cut(s)	217
BtsI	GCAGTG	1 cut(s)	524
BtsIMutI	CAGTG	1 cut(s)	524
BveI	ACCTGC	1 cut(s)	332
Cac8I	GCNNGC	2 cut(s)	329, 489
Csp6I	GTAC	5 cut(s)	15, 79, 120, 129, 254
CviAII	CATG	4 cut(s)	113, 226, 362, 505
CviJI	RGCY	3 cut(s)	331, 336, 409
CviKI_1	RGCY	3 cut(s)	331, 336, 409
CviQI	GTAC	5 cut(s)	15, 79, 120, 129, 254
DdeI	CTNAG	1 cut(s)	261
DpnI	GATC	4 cut(s)	192, 266, 427, 503
DpnII	GATC	4 cut(s)	190, 264, 425, 501
Eco57I	CTGAAG	1 cut(s)	224
FaeI	CATG	4 cut(s)	116, 229, 365, 508
FaiI	YATR	8 cut(s)	114, 185, 227, 239, 363, 417, 506, 559
FaqI	GGGAC	1 cut(s)	243
FatI	CATG	4 cut(s)	112, 225, 361, 504
Fnu4HI	GCNGC	2 cut(s)	142, 145
FokI	GGATG	1 cut(s)	224
Fsp4HI	GCNGC	2 cut(s)	142, 145
FspBI	CTAG	1 cut(s)	366
GluI	GCNGC	2 cut(s)	142, 145
HaeIII	GGCC	1 cut(s)	336
Hin1II	CATG	4 cut(s)	116, 229, 365, 508
HindIII	AAGCTT	1 cut(s)	329
HinfI	GANTC	2 cut(s)	107, 288
HphI	GGTGA	2 cut(s)	74, 306
Hpy166II	GTNNAC	2 cut(s)	314, 524
Hpy188I	TCNGA	4 cut(s)	282, 293, 448, 473
Hpy188III	TCNNGA	3 cut(s)	260, 377, 462
Hpy8I	GTNNAC	2 cut(s)	314, 524
HpyAV	CCTTC	4 cut(s)	53, 199, 316, 347
HpyCH4III	ACNGT	2 cut(s)	234, 352
HpyCH4V	TGCA	6 cut(s)	152, 327, 344, 508, 529, 557
HpyF10VI	GCNNNNNNNGC	2 cut(s)	333, 371
HpyF3I	CTNAG	1 cut(s)	261
Hsp92II	CATG	4 cut(s)	116, 229, 365, 508
Kzo9I	GATC	4 cut(s)	190, 264, 425, 501
LpnPI	CCDG	6 cut(s)	201, 253, 273, 337, 423, 447
Lsp1109I	GCAGC	2 cut(s)	153, 156
LweI	GCATC	2 cut(s)	361, 538
MaeI	CTAG	1 cut(s)	366
MalI	GATC	4 cut(s)	192, 266, 427, 503
MboI	GATC	4 cut(s)	190, 264, 425, 501
MboII	GAAGA	3 cut(s)	392, 461, 511
MflI	RGATCY	2 cut(s)	190, 264
MluCI	AATT	3 cut(s)	35, 429, 435
MmeI	TCCRAC	1 cut(s)	34
MnlI	CCTC	4 cut(s)	127, 202, 267, 526
MroXI	GAANNNNTTC	2 cut(s)	38, 384
MseI	TTAA	1 cut(s)	420
MslI	CAYNNNNRTG	1 cut(s)	366
MwoI	GCNNNNNNNGC	2 cut(s)	333, 371
NdeII	GATC	4 cut(s)	190, 264, 425, 501
NlaIII	CATG	4 cut(s)	116, 229, 365, 508
NlaIV	GGNNCC	1 cut(s)	466
PcsI	WCGNNNNNNNCGW	1 cut(s)	307
PdmI	GAANNNNTTC	2 cut(s)	38, 384
PfeI	GAWTC	2 cut(s)	107, 288
PkrI	GCNGC	2 cut(s)	143, 146
PshBI	ATTAAT	1 cut(s)	420
PsiI	TTATAA	1 cut(s)	239
PspN4I	GGNNCC	1 cut(s)	466
PsuI	RGATCY	2 cut(s)	190, 264
RsaI	GTAC	5 cut(s)	16, 80, 121, 130, 255
RsaNI	GTAC	5 cut(s)	15, 79, 120, 129, 254
RseI	CAYNNNNRTG	1 cut(s)	366
SaqAI	TTAA	1 cut(s)	420
SatI	GCNGC	2 cut(s)	142, 145
Sau3AI	GATC	4 cut(s)	190, 264, 425, 501
SetI	ASST	5 cut(s)	64, 91, 259, 326, 333
SfaNI	GCATC	2 cut(s)	361, 538
SfcI	CTRYAG	1 cut(s)	247
SmiMI	CAYNNNNRTG	1 cut(s)	366
Sse9I	AATT	3 cut(s)	35, 429, 435
SspMI	CTAG	1 cut(s)	366
TaaI	ACNGT	2 cut(s)	234, 352
TaqI	TCGA	1 cut(s)	497
TasI	AATT	3 cut(s)	35, 429, 435
TatI	WGTACW	1 cut(s)	128
TfiI	GAWTC	2 cut(s)	107, 288
Tru1I	TTAA	1 cut(s)	420
Tru9I	TTAA	1 cut(s)	420
TscAI	CASTG	1 cut(s)	531
TseI	GCWGC	2 cut(s)	141, 144
TspDTI	ATGAA	2 cut(s)	42, 350
TspGWI	ACGGA	2 cut(s)	186, 299
TspRI	CASTG	1 cut(s)	531
VspI	ATTAAT	1 cut(s)	420
XmnI	GAANNNNTTC	2 cut(s)	38, 384
XspI	CTAG	1 cut(s)	366

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.