Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr1

Orthogroup ID

OG0010629

Physical Location & Seq

Genomic Coordinates Reverse (-)

33668037 .. 33669021

Gene Structure 985 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000002411

Sequence Viewer

CDS Protein Promoter (2k)

Length: 855 bp

ATGGTTTGTTTTGATTATGTAAATAGTTATCTCCTGTCTCTGGCAAAGAGCTGGGGAAGCAAGGAAGAGGGGCTGGATTTATTTTCACTTGTCATGGCAAATGATAGTACCCAAGATGATGAGCTGAATATGTTCCCAACTGATGTAGGAGAAGGTGATTACAAATATCAGTACCAAATAGGTTCTACACCTTATTTTGAATCGCATGGGAATACCCAAAGTACAGAGGAGAGCAGCAGCAATGCAAATAATACTTCCAATTACGGAGTTATACACATGCCAAATCTCCATTTACTGGAGGATGTTTTAAAGCTCATGGGACAGTTTATAAAGGACTACAGAGTACCTCCTGAGATTTGGTTCTCACTTCTGACAAGAATTAGATATGCCCATGCCTTCTGTTCACCAAGAACCTGCAAGCTGTACAGGAGGATTTGCCTTCTTGCATTTACTGTGCTTGTTCAAGCTAGTGATGCTCCTGAAGAACTTCTGTCTTTCTTTGCTAATAAGCCAGACTATATTAGTAGATCAATTAGAATTGTGCCATCAGAAGAAGTAGTTTCTGGAACCATCAGAACAAATACAATGCTTGCCTTATCGAAGATCATGCACCAACCTTCTTGTCCACTGCATCACATTGTAGTTTTTGCTTCTGCAAAATTGGGGGCTTTTACTTTTGCATCAATTGCGTTGGATCACATGAGTTATGGGGGGGCATACAGACATGGAGTTACCCAGTCAGTTTTGACATTTGAAGCTATCACTCAATTGCTCTTCAAAGTCATTTTGACTCCCGCATCTCCCATGGATATTGATGTTGGGAACTCAAAGCAGGATGAAAGAGAAGATACCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004842 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005739 GO:0005829 GO:0006464 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0032446 GO:0036211 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0061630 GO:0061659 GO:0070647 GO:0071704 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko04120 map04120

Pfam Domains

Protein Families

DUF4414 DUF908 DUF913 HECT UBA

Protein Analysis

285

Amino Acids

31.9

Weight (kDa)

5.33

Isoelectric Point (pI)

41.55

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DUF908	PF06012	67 - 204	9.5e-11	Domain of Unknown Function (DUF908)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010629)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr7g0217641 RchiOBHm_Chr7g0217651
rosa_laevigata	RLG00000002410 RLG00000002411 RLG00000002452 RLG00000019774
rosa_multiflora	Rmu_sc0000379.1_g000014 Rmu_sc0001300.1_g000006 Rmu_sc0001300.1_g000007 Rmu_sc0002029.1_g000025
rosa_roxburghii	Rroxscaffold_3G00241370
rosa_rugosa	Rorug07G0170600 Rorug07G0170600
rosa_samantha	Rh7AG310700 Rh7AG310800 Rh7AG316100 Rh7BG302300 Rh7BG302400 Rh7CG329700 Rh7DG314900
rosa_wichuraiana	Rw7G026700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	329
Acc36I	ACCTGC	1 cut(s)	422
AccB7I	CCANNNNNTGG	1 cut(s)	295
AciI	CCGC	1 cut(s)	795
AclWI	GGATC	1 cut(s)	702
AcuI	CTGAAG	1 cut(s)	501
AfaI	GTAC	5 cut(s)	109, 173, 223, 345, 425
AfiI	CCNNNNNNNGG	2 cut(s)	40, 295
AgsI	TTSAA	4 cut(s)	200, 464, 755, 778
AluBI	AGCT	6 cut(s)	51, 124, 313, 421, 467, 758
AluI	AGCT	6 cut(s)	51, 124, 313, 421, 467, 758
Alw26I	GTCTC	1 cut(s)	42
AlwI	GGATC	1 cut(s)	702
ApeKI	GCWGC	2 cut(s)	234, 237
Asp700I	GAANNNNTTC	2 cut(s)	131, 486
AsuHPI	GGTGA	2 cut(s)	167, 396
BbvI	GCAGC	2 cut(s)	246, 249
BccI	CCATC	2 cut(s)	553, 578
BcgI	CGANNNNNNTGC	2 cut(s)	589, 623
BcoDI	GTCTC	1 cut(s)	42
BfaI	CTAG	1 cut(s)	468
BfmI	CTRYAG	1 cut(s)	337
BfuAI	ACCTGC	1 cut(s)	422
BisI	GCNGC	2 cut(s)	235, 238
BlsI	GCNGC	2 cut(s)	236, 239
BmiI	GGNNCC	1 cut(s)	568
BmrI	ACTGGG	1 cut(s)	730
BmsI	GCATC	4 cut(s)	463, 640, 689, 806
BmuI	ACTGGG	1 cut(s)	730
BpmI	CTGGAG	1 cut(s)	317
BsaJI	CCNNGG	1 cut(s)	804
Bsc4I	CCNNNNNNNGG	2 cut(s)	40, 295
Bse1I	ACTGG	2 cut(s)	300, 736
Bse3DI	GCAATG	1 cut(s)	247
BseDI	CCNNGG	1 cut(s)	804
BseGI	GGATG	2 cut(s)	307, 841
BseLI	CCNNNNNNNGG	2 cut(s)	40, 295
BseMI	GCAATG	1 cut(s)	247
BseMII	CTCAG	1 cut(s)	342
BseNI	ACTGG	2 cut(s)	300, 736
BseRI	GAGGAG	1 cut(s)	242
BseXI	GCAGC	2 cut(s)	246, 249
BseYI	CCCAGC	1 cut(s)	51
BslFI	GGGAC	1 cut(s)	333
BslI	CCNNNNNNNGG	2 cut(s)	40, 295
BsmAI	GTCTC	1 cut(s)	42
BsmFI	GGGAC	1 cut(s)	333
Bsp1407I	TGTACA	1 cut(s)	423
Bsp143I	GATC	3 cut(s)	527, 603, 694
Bsp19I	CCATGG	1 cut(s)	804
BspACI	CCGC	1 cut(s)	795
BspCNI	CTCAG	1 cut(s)	343
BspLI	GGNNCC	1 cut(s)	568
BspMI	ACCTGC	1 cut(s)	422
BspPI	GGATC	1 cut(s)	702
BspQI	GCTCTTC	1 cut(s)	779
BsrDI	GCAATG	1 cut(s)	247
BsrGI	TGTACA	1 cut(s)	423
BsrI	ACTGG	2 cut(s)	300, 736
BssECI	CCNNGG	1 cut(s)	804
BssMI	GATC	3 cut(s)	527, 603, 694
BssT1I	CCWWGG	1 cut(s)	804
Bst4CI	ACNGT	2 cut(s)	324, 454
Bst6I	CTCTTC	2 cut(s)	60, 779
BstAPI	GCANNNNNTGC	1 cut(s)	686
BstAUI	TGTACA	1 cut(s)	423
BstC8I	GCNNGC	2 cut(s)	419, 591
BstDEI	CTNAG	1 cut(s)	351
BstDSI	CCRYGG	1 cut(s)	804
BstF5I	GGATG	2 cut(s)	307, 841
BstKTI	GATC	3 cut(s)	530, 606, 697
BstMAI	GTCTC	1 cut(s)	42
BstMBI	GATC	3 cut(s)	527, 603, 694
BstMWI	GCNNNNNNNGC	3 cut(s)	57, 473, 686
BstNSI	RCATGY	1 cut(s)	280
BstSFI	CTRYAG	1 cut(s)	337
BstV1I	GCAGC	2 cut(s)	246, 249
BtgI	CCRYGG	1 cut(s)	804
BtsCI	GGATG	2 cut(s)	307, 841
BtsI	GCAGTG	1 cut(s)	626
BtsIMutI	CAGTG	1 cut(s)	626
BveI	ACCTGC	1 cut(s)	422
Cac8I	GCNNGC	2 cut(s)	419, 591
Csp6I	GTAC	5 cut(s)	108, 172, 222, 344, 424
CviAII	CATG	9 cut(s)	94, 206, 277, 316, 392, 607, 700, 725, 805
CviJI	RGCY	9 cut(s)	51, 73, 124, 313, 421, 467, 511, 668, 758
CviKI_1	RGCY	9 cut(s)	51, 73, 124, 313, 421, 467, 511, 668, 758
CviQI	GTAC	5 cut(s)	108, 172, 222, 344, 424
DdeI	CTNAG	1 cut(s)	351
DpnI	GATC	3 cut(s)	529, 605, 696
DpnII	GATC	3 cut(s)	527, 603, 694
DraI	TTTAAA	1 cut(s)	309
Eam1104I	CTCTTC	2 cut(s)	60, 779
EarI	CTCTTC	2 cut(s)	60, 779
Eco130I	CCWWGG	1 cut(s)	804
Eco57I	CTGAAG	1 cut(s)	501
EcoT14I	CCWWGG	1 cut(s)	804
ErhI	CCWWGG	1 cut(s)	804
FaeI	CATG	9 cut(s)	97, 209, 280, 319, 395, 610, 703, 728, 808
FaqI	GGGAC	1 cut(s)	333
FatI	CATG	9 cut(s)	93, 205, 276, 315, 391, 606, 699, 724, 804
FauI	CCCGC	1 cut(s)	802
Fnu4HI	GCNGC	2 cut(s)	235, 238
FokI	GGATG	2 cut(s)	314, 848
Fsp4HI	GCNGC	2 cut(s)	235, 238
FspBI	CTAG	1 cut(s)	468
GluI	GCNGC	2 cut(s)	235, 238
GsaI	CCCAGC	1 cut(s)	55
GsuI	CTGGAG	1 cut(s)	317
Hin1II	CATG	9 cut(s)	97, 209, 280, 319, 395, 610, 703, 728, 808
HinfI	GANTC	2 cut(s)	200, 790
HphI	GGTGA	2 cut(s)	167, 396
Hpy166II	GTNNAC	2 cut(s)	404, 626
Hpy188I	TCNGA	3 cut(s)	372, 550, 575
Hpy188III	TCNNGA	3 cut(s)	350, 479, 564
Hpy8I	GTNNAC	2 cut(s)	404, 626
HpyAV	CCTTC	4 cut(s)	146, 406, 449, 627
HpyCH4III	ACNGT	2 cut(s)	324, 454
HpyCH4V	TGCA	7 cut(s)	245, 417, 446, 610, 631, 656, 680
HpyF10VI	GCNNNNNNNGC	3 cut(s)	57, 473, 686
HpyF3I	CTNAG	1 cut(s)	351
Hsp92II	CATG	9 cut(s)	97, 209, 280, 319, 395, 610, 703, 728, 808
Kzo9I	GATC	3 cut(s)	527, 603, 694
LguI	GCTCTTC	1 cut(s)	779
LmnI	GCTCC	1 cut(s)	481
Lsp1109I	GCAGC	2 cut(s)	246, 249
LweI	GCATC	4 cut(s)	463, 640, 689, 806
MaeI	CTAG	1 cut(s)	468
MaeIII	GTNAC	1 cut(s)	730
MalI	GATC	3 cut(s)	529, 605, 696
MboI	GATC	3 cut(s)	527, 603, 694
MboII	GAAGA	5 cut(s)	77, 494, 563, 613, 766
MfeI	CAATTG	2 cut(s)	684, 767
MluCI	AATT	7 cut(s)	259, 378, 531, 537, 659, 684, 767
MlyI	GAGTC	1 cut(s)	784
MmeI	TCCRAC	1 cut(s)	672
MnlI	CCTC	5 cut(s)	61, 220, 292, 357, 423
MroXI	GAANNNNTTC	2 cut(s)	131, 486
MseI	TTAA	1 cut(s)	308
MunI	CAATTG	2 cut(s)	684, 767
MwoI	GCNNNNNNNGC	3 cut(s)	57, 473, 686
NcoI	CCATGG	1 cut(s)	804
NdeII	GATC	3 cut(s)	527, 603, 694
NlaIII	CATG	9 cut(s)	97, 209, 280, 319, 395, 610, 703, 728, 808
NlaIV	GGNNCC	1 cut(s)	568
NspI	RCATGY	1 cut(s)	280
PciSI	GCTCTTC	1 cut(s)	779
PdmI	GAANNNNTTC	2 cut(s)	131, 486
PfeI	GAWTC	1 cut(s)	200
PflMI	CCANNNNNTGG	1 cut(s)	295
PkrI	GCNGC	2 cut(s)	236, 239
PleI	GAGTC	1 cut(s)	784
PpsI	GAGTC	1 cut(s)	784
PsiI	TTATAA	1 cut(s)	329
PspFI	CCCAGC	1 cut(s)	51
PspN4I	GGNNCC	1 cut(s)	568
RsaI	GTAC	5 cut(s)	109, 173, 223, 345, 425
RsaNI	GTAC	5 cut(s)	108, 172, 222, 344, 424
SapI	GCTCTTC	1 cut(s)	779
SaqAI	TTAA	1 cut(s)	308
SatI	GCNGC	2 cut(s)	235, 238
Sau3AI	GATC	3 cut(s)	527, 603, 694
SchI	GAGTC	1 cut(s)	784
SfaNI	GCATC	4 cut(s)	463, 640, 689, 806
SfcI	CTRYAG	1 cut(s)	337
Sse9I	AATT	7 cut(s)	259, 378, 531, 537, 659, 684, 767
SsiI	CCGC	1 cut(s)	795
SspMI	CTAG	1 cut(s)	468
StyI	CCWWGG	1 cut(s)	804
TaaI	ACNGT	2 cut(s)	324, 454
TaqI	TCGA	1 cut(s)	599
TasI	AATT	7 cut(s)	259, 378, 531, 537, 659, 684, 767
TatI	WGTACW	2 cut(s)	221, 423
TfiI	GAWTC	1 cut(s)	200
Tru1I	TTAA	1 cut(s)	308
Tru9I	TTAA	1 cut(s)	308
TscAI	CASTG	1 cut(s)	633
TseI	GCWGC	2 cut(s)	234, 237
TspDTI	ATGAA	1 cut(s)	852
TspGWI	ACGGA	1 cut(s)	279
TspRI	CASTG	1 cut(s)	633
Van91I	CCANNNNNTGG	1 cut(s)	295
XceI	RCATGY	1 cut(s)	280
XmnI	GAANNNNTTC	2 cut(s)	131, 486
XspI	CTAG	1 cut(s)	468

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.