RLG00000002410

TPR and ankyrin repeat-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr1
OG0010629
Physical Location & Seq
Reverse (-)
33652395 .. 33655464
3070 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000002410

Sequence Viewer

Length: 966 bp
ATGCCAATTTCAAATCTAAGGATATGCTTAGTGGCTCCAGATGTTGGAAGTGAACGAGTTCGAAAGGCTATAGTGAGTGACAGTGAACTCAAGTTTGATGAAATCACACGAGGCGTGTATGTAACTATATGTGGAAGTGCTTATAGGTGCGACAGGGTGCAGGAACATTTGAAGGAACGGATTTATTACGTGGATATGGATTTGGAAGCAATTCGCGGGGAAGCCCTTTCGTATATGTCAAAAAATCCTCTAAATCCACATGATGTGGGAGCTACATTTTTCCTTGTAGGACAGAAGCGTGAGGTGTATACAGTTTATGAAGTCCAGGATAGTAGCAACGGTCCATTGGCACCCACAATAGACCAGTTGTTCTATGCCATTGGATCTGGTGCTGCGGCTGCACTTCCTCTTTCAGCAAGTAAGGAGAACATTCATGTTGGTATGACAGAAAAGGAAGGTATAGAGTGTGTAAAGCGCGCTTTGTTATGTTCTGCAACTACTGAACCTGGTTGTGGAGGAGAGATCAGAGTGTACTGTGTCAAAGGGAGAAGATATGACCTAGTGTTCCAAAAGCATGCTATGGAGATGATTTTAGAGATGCCACAAGAGGGGTTCTTTGGTGGAGACAAGTTATTTTTCATCATCGAGAAAAGACGAAATGAATTTACTCCTGAAGATCTGTGGCGACTTTTAAATGGGACCGCCGGTAATAGAATTAAACTAGTGCATTGCATAGTTGAAACCGGTGAATGGTTATTGTCAGAGGCTAAGGCTAGACGGGCATACAATAGAGGAGAAGCGATTGACGAATTAGGTTCCCTTCGAAAAAGACAGTTCCGGATCCGTCTACCTTTTGTGAACGTAGTTTCTGTGACTACATACGTGGGTTATGCATCAAAGGAACTACTTAGGGAGACGCTCAACATGAAGCAGGCACTCCACATGAAGCTTCGTGTCCACTTGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0003674 GO:0003678 GO:0003724 GO:0003824 GO:0004003 GO:0004004 GO:0004386 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005657 GO:0005694 GO:0005737 GO:0006139 GO:0006259 GO:0006260 GO:0006261 GO:0006281 GO:0006283 GO:0006289 GO:0006351 GO:0006353 GO:0006355 GO:0006357 GO:0006364 GO:0006366 GO:0006369 GO:0006378 GO:0006396 GO:0006397 GO:0006399 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0006996 GO:0008026 GO:0008033 GO:0008094 GO:0008150 GO:0008152 GO:0008186 GO:0009058 GO:0009059 GO:0009889 GO:0009987 GO:0010467 GO:0010468 GO:0010556 GO:0016043 GO:0016070 GO:0016071 GO:0016072 GO:0016073 GO:0016074 GO:0016180 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0018130 GO:0019219 GO:0019222 GO:0019438 GO:0019725 GO:0019904 GO:0022613 GO:0031123 GO:0031124 GO:0031126 GO:0031323 GO:0031326 GO:0032392 GO:0032508 GO:0032574 GO:0032575 GO:0032774 GO:0032991 GO:0033554 GO:0033677 GO:0033678 GO:0033680 GO:0033682 GO:0034470 GO:0034641 GO:0034645 GO:0034654 GO:0034660 GO:0035649 GO:0042254 GO:0042592 GO:0042623 GO:0043139 GO:0043141 GO:0043144 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043618 GO:0043620 GO:0043628 GO:0043631 GO:0044085 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044422 GO:0044424 GO:0044427 GO:0044446 GO:0044464 GO:0045005 GO:0045454 GO:0046483 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0051276 GO:0051716 GO:0060255 GO:0065007 GO:0065008 GO:0070035 GO:0071103 GO:0071704 GO:0071840 GO:0080090 GO:0090304 GO:0097659 GO:0140097 GO:0140098 GO:1901360 GO:1901362 GO:1901576 GO:1903506 GO:1990248 GO:2000112 GO:2001141
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
AAA_11 AAA_12 AAA_19 UvrD-helicase

Protein Analysis

322

Amino Acids

36.32

Weight (kDa)

8.33

Isoelectric Point (pI)

42.04

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 349
AccB7I CCANNNNNTGG 1 cut(s) 44
AccI GTMKAC 2 cut(s) 308, 847
AccII CGCG 2 cut(s) 216, 477
AccIII TCCGGA 1 cut(s) 837
AciI CCGC 3 cut(s) 216, 395, 702
AclWI GGATC 3 cut(s) 391, 835, 848
AcsI RAATTY 1 cut(s) 662
AcuI CTGAAG 1 cut(s) 693
AfaI GTAC 1 cut(s) 533
AfiI CCNNNNNNNGG 4 cut(s) 44, 512, 608, 750
AgeI ACCGGT 1 cut(s) 743
AgsI TTSAA 3 cut(s) 12, 172, 740
AhlI ACTAGT 1 cut(s) 721
AjnI CCWGG 2 cut(s) 324, 505
AluBI AGCT 2 cut(s) 272, 949
AluI AGCT 2 cut(s) 272, 949
Alw26I GTCTC 2 cut(s) 618, 908
AlwI GGATC 3 cut(s) 391, 835, 848
Aor13HI TCCGGA 1 cut(s) 837
ApeKI GCWGC 2 cut(s) 392, 398
ApoI RAATTY 1 cut(s) 662
AsiGI ACCGGT 1 cut(s) 743
Asp700I GAANNNNTTC 2 cut(s) 57, 210
AspLEI GCGC 2 cut(s) 477, 479
AspS9I GGNCC 2 cut(s) 341, 699
AsuHPI GGTGA 1 cut(s) 758
AsuII TTCGAA 2 cut(s) 61, 823
AvaII GGWCC 2 cut(s) 341, 699
BamHI GGATCC 1 cut(s) 840
BanI GGYRCC 1 cut(s) 349
BauI CACGAG 1 cut(s) 108
BbvI GCAGC 2 cut(s) 379, 385
BciT130I CCWGG 2 cut(s) 326, 507
BcoDI GTCTC 2 cut(s) 618, 908
BcuI ACTAGT 1 cut(s) 721
BfaI CTAG 3 cut(s) 560, 722, 774
BfmI CTRYAG 1 cut(s) 69
BglII AGATCT 1 cut(s) 676
BisI GCNGC 3 cut(s) 393, 396, 399
BlsI GCNGC 3 cut(s) 394, 397, 400
Bme1390I CCNGG 2 cut(s) 326, 507
Bme18I GGWCC 2 cut(s) 341, 699
BmgT120I GGNCC 2 cut(s) 341, 699
BmiI GGNNCC 5 cut(s) 36, 351, 700, 817, 842
BmrFI CCNGG 2 cut(s) 326, 507
BmsI GCATC 2 cut(s) 588, 902
BpmI CTGGAG 1 cut(s) 21
Bpu10I CCTNAGC 1 cut(s) 768
Bpu14I TTCGAA 2 cut(s) 61, 823
BpuEI CTTGAG 1 cut(s) 74
BsaAI YACGTR 2 cut(s) 190, 883
BsaWI WCCGGW 2 cut(s) 743, 837
Bsc4I CCNNNNNNNGG 4 cut(s) 44, 512, 608, 750
Bse118I RCCGGY 2 cut(s) 704, 743
Bse1I ACTGG 1 cut(s) 364
Bse3DI GCAATG 1 cut(s) 727
BseAI TCCGGA 1 cut(s) 837
BseBI CCWGG 2 cut(s) 326, 507
BseLI CCNNNNNNNGG 4 cut(s) 44, 512, 608, 750
BseMI GCAATG 1 cut(s) 727
BseNI ACTGG 1 cut(s) 364
BsePI GCGCGC 1 cut(s) 475
BseRI GAGGAG 2 cut(s) 531, 807
BseXI GCAGC 2 cut(s) 379, 385
BsgI GTGCAG 2 cut(s) 179, 384
Bsh1236I CGCG 2 cut(s) 216, 477
BshNI GGYRCC 1 cut(s) 349
BshTI ACCGGT 1 cut(s) 743
BsiSI CCGG 3 cut(s) 705, 744, 838
BslFI GGGAC 1 cut(s) 712
BslI CCNNNNNNNGG 4 cut(s) 44, 512, 608, 750
BsmAI GTCTC 2 cut(s) 618, 908
BsmBI CGTCTC 1 cut(s) 908
BsmFI GGGAC 1 cut(s) 712
Bsp119I TTCGAA 2 cut(s) 61, 823
Bsp13I TCCGGA 1 cut(s) 837
Bsp143I GATC 4 cut(s) 383, 522, 676, 840
BspACI CCGC 3 cut(s) 216, 395, 702
BspEI TCCGGA 1 cut(s) 837
BspFNI CGCG 2 cut(s) 216, 477
BspLI GGNNCC 5 cut(s) 36, 351, 700, 817, 842
BspPI GGATC 3 cut(s) 391, 835, 848
BspT104I TTCGAA 2 cut(s) 61, 823
BspT107I GGYRCC 1 cut(s) 349
BsrDI GCAATG 1 cut(s) 727
BsrFI RCCGGY 2 cut(s) 704, 743
BsrI ACTGG 1 cut(s) 364
BssAI RCCGGY 2 cut(s) 704, 743
BssHII GCGCGC 1 cut(s) 475
BssMI GATC 4 cut(s) 383, 522, 676, 840
BssNAI GTATAC 1 cut(s) 309
BssSI CACGAG 1 cut(s) 108
Bst1107I GTATAC 1 cut(s) 309
Bst2BI CACGAG 1 cut(s) 108
Bst2UI CCWGG 2 cut(s) 326, 507
Bst4CI ACNGT 5 cut(s) 83, 313, 341, 536, 834
BstBAI YACGTR 2 cut(s) 190, 883
BstBI TTCGAA 2 cut(s) 61, 823
BstC8I GCNNGC 3 cut(s) 477, 576, 933
BstDEI CTNAG 4 cut(s) 17, 28, 768, 908
BstFNI CGCG 2 cut(s) 216, 477
BstHHI GCGC 2 cut(s) 477, 479
BstKTI GATC 4 cut(s) 386, 525, 679, 843
BstMAI GTCTC 2 cut(s) 618, 908
BstMBI GATC 4 cut(s) 383, 522, 676, 840
BstMWI GCNNNNNNNGC 2 cut(s) 398, 779
BstNI CCWGG 2 cut(s) 326, 507
BstNSI RCATGY 1 cut(s) 578
BstSCI CCNGG 2 cut(s) 324, 505
BstSFI CTRYAG 1 cut(s) 69
BstUI CGCG 2 cut(s) 216, 477
BstV1I GCAGC 2 cut(s) 379, 385
BstX2I RGATCY 3 cut(s) 383, 676, 840
BstYI RGATCY 3 cut(s) 383, 676, 840
BstZ17I GTATAC 1 cut(s) 309
BtsIMutI CAGTG 1 cut(s) 88
Cac8I GCNNGC 3 cut(s) 477, 576, 933
CfoI GCGC 2 cut(s) 477, 479
Cfr10I RCCGGY 2 cut(s) 704, 743
Cfr13I GGNCC 2 cut(s) 341, 699
CseI GACGC 1 cut(s) 925
CsiI ACCWGGT 1 cut(s) 505
Csp6I GTAC 1 cut(s) 532
CspAI ACCGGT 1 cut(s) 743
CviAII CATG 5 cut(s) 260, 434, 575, 925, 943
CviJI RGCY 8 cut(s) 35, 68, 224, 272, 398, 767, 773, 949
CviKI_1 RGCY 8 cut(s) 35, 68, 224, 272, 398, 767, 773, 949
CviQI GTAC 1 cut(s) 532
DdeI CTNAG 4 cut(s) 17, 28, 768, 908
DpnI GATC 4 cut(s) 385, 524, 678, 842
DpnII GATC 4 cut(s) 383, 522, 676, 840
DraI TTTAAA 1 cut(s) 693
Eco47I GGWCC 2 cut(s) 341, 699
Eco57I CTGAAG 1 cut(s) 693
EcoRII CCWGG 2 cut(s) 324, 505
EcoT22I ATGCAT 1 cut(s) 895
Esp3I CGTCTC 1 cut(s) 908
FaeI CATG 5 cut(s) 263, 437, 578, 928, 946
FaqI GGGAC 1 cut(s) 712
FatI CATG 5 cut(s) 259, 433, 574, 924, 942
FauI CCCGC 1 cut(s) 209
FblI GTMKAC 2 cut(s) 308, 847
Fnu4HI GCNGC 3 cut(s) 393, 396, 399
Fsp4HI GCNGC 3 cut(s) 393, 396, 399
FspBI CTAG 3 cut(s) 560, 722, 774
GlaI GCGC 2 cut(s) 476, 478
GluI GCNGC 3 cut(s) 393, 396, 399
GsuI CTGGAG 1 cut(s) 21
HapII CCGG 3 cut(s) 705, 744, 838
HgaI GACGC 1 cut(s) 925
HhaI GCGC 2 cut(s) 477, 479
Hin1II CATG 5 cut(s) 263, 437, 578, 928, 946
Hin6I GCGC 2 cut(s) 475, 477
HinP1I GCGC 2 cut(s) 475, 477
HindIII AAGCTT 1 cut(s) 947
HpaII CCGG 3 cut(s) 705, 744, 838
HphI GGTGA 1 cut(s) 758
Hpy166II GTNNAC 7 cut(s) 53, 86, 309, 532, 848, 859, 958
Hpy188I TCNGA 2 cut(s) 527, 763
Hpy188III TCNNGA 4 cut(s) 38, 646, 671, 838
Hpy8I GTNNAC 7 cut(s) 53, 86, 309, 532, 848, 859, 958
HpyAV CCTTC 3 cut(s) 166, 449, 830
HpyCH4III ACNGT 5 cut(s) 83, 313, 341, 536, 834
HpyCH4IV ACGT 3 cut(s) 189, 861, 882
HpyCH4V TGCA 6 cut(s) 160, 401, 494, 727, 732, 893
HpyF10VI GCNNNNNNNGC 2 cut(s) 398, 779
HpyF3I CTNAG 4 cut(s) 17, 28, 768, 908
HpySE526I ACGT 3 cut(s) 189, 861, 882
Hsp92II CATG 5 cut(s) 263, 437, 578, 928, 946
HspAI GCGC 2 cut(s) 475, 477
Kpn2I TCCGGA 1 cut(s) 837
Kzo9I GATC 4 cut(s) 383, 522, 676, 840
LmnI GCTCC 2 cut(s) 40, 269
Lsp1109I GCAGC 2 cut(s) 379, 385
LweI GCATC 2 cut(s) 588, 902
MabI ACCWGGT 1 cut(s) 505
MaeI CTAG 3 cut(s) 560, 722, 774
MaeII ACGT 3 cut(s) 189, 861, 882
MaeIII GTNAC 3 cut(s) 77, 121, 871
MalI GATC 4 cut(s) 385, 524, 678, 842
MboI GATC 4 cut(s) 383, 522, 676, 840
MboII GAAGA 2 cut(s) 561, 686
MflI RGATCY 3 cut(s) 383, 676, 840
MluCI AATT 5 cut(s) 6, 210, 662, 714, 809
MmeI TCCRAC 1 cut(s) 25
MnlI CCTC 8 cut(s) 104, 258, 295, 417, 509, 601, 757, 785
Mph1103I ATGCAT 1 cut(s) 895
MroI TCCGGA 1 cut(s) 837
MroXI GAANNNNTTC 2 cut(s) 57, 210
MseI TTAA 2 cut(s) 692, 717
MspI CCGG 3 cut(s) 705, 744, 838
MspR9I CCNGG 2 cut(s) 326, 507
MvaI CCWGG 2 cut(s) 326, 507
MvnI CGCG 2 cut(s) 216, 477
MwoI GCNNNNNNNGC 2 cut(s) 398, 779
NdeII GATC 4 cut(s) 383, 522, 676, 840
NlaIII CATG 5 cut(s) 263, 437, 578, 928, 946
NlaIV GGNNCC 5 cut(s) 36, 351, 700, 817, 842
NmuCI GTSAC 2 cut(s) 77, 871
NsiI ATGCAT 1 cut(s) 895
NspI RCATGY 1 cut(s) 578
NspV TTCGAA 2 cut(s) 61, 823
PaeI GCATGC 1 cut(s) 578
PauI GCGCGC 1 cut(s) 475
PdmI GAANNNNTTC 2 cut(s) 57, 210
PflMI CCANNNNNTGG 1 cut(s) 44
PfoI TCCNGGA 1 cut(s) 324
PinAI ACCGGT 1 cut(s) 743
PkrI GCNGC 3 cut(s) 394, 397, 400
Ppu21I YACGTR 2 cut(s) 190, 883
Psp6I CCWGG 2 cut(s) 324, 505
PspGI CCWGG 2 cut(s) 324, 505
PspN4I GGNNCC 5 cut(s) 36, 351, 700, 817, 842
PspPI GGNCC 2 cut(s) 341, 699
PsuI RGATCY 3 cut(s) 383, 676, 840
PteI GCGCGC 1 cut(s) 475
RsaI GTAC 1 cut(s) 533
RsaNI GTAC 1 cut(s) 532
SaqAI TTAA 2 cut(s) 692, 717
SatI GCNGC 3 cut(s) 393, 396, 399
Sau3AI GATC 4 cut(s) 383, 522, 676, 840
Sau96I GGNCC 2 cut(s) 341, 699
ScrFI CCNGG 2 cut(s) 326, 507
SexAI ACCWGGT 1 cut(s) 505
SfaNI GCATC 2 cut(s) 588, 902
SfcI CTRYAG 1 cut(s) 69
SfuI TTCGAA 2 cut(s) 61, 823
SinI GGWCC 2 cut(s) 341, 699
SmlI CTYRAG 1 cut(s) 89
SmoI CTYRAG 1 cut(s) 89
SpeI ACTAGT 1 cut(s) 721
SphI GCATGC 1 cut(s) 578
Sse9I AATT 5 cut(s) 6, 210, 662, 714, 809
SsiI CCGC 3 cut(s) 216, 395, 702
SspMI CTAG 3 cut(s) 560, 722, 774
StyD4I CCNGG 2 cut(s) 324, 505
TaaI ACNGT 5 cut(s) 83, 313, 341, 536, 834
TaiI ACGT 3 cut(s) 192, 864, 885
TaqI TCGA 3 cut(s) 61, 645, 823
TasI AATT 5 cut(s) 6, 210, 662, 714, 809
TatI WGTACW 1 cut(s) 531
TauI GCSGC 1 cut(s) 398
Tru1I TTAA 2 cut(s) 692, 717
Tru9I TTAA 2 cut(s) 692, 717
TscAI CASTG 1 cut(s) 88
TseFI GTSAC 2 cut(s) 77, 871
TseI GCWGC 2 cut(s) 392, 398
Tsp45I GTSAC 2 cut(s) 77, 871
TspDTI ATGAA 7 cut(s) 114, 333, 422, 628, 675, 941, 959
TspGWI ACGGA 2 cut(s) 193, 833
TspRI CASTG 1 cut(s) 88
Van91I CCANNNNNTGG 1 cut(s) 44
VpaK11BI GGWCC 2 cut(s) 341, 699
XapI RAATTY 1 cut(s) 662
XceI RCATGY 1 cut(s) 578
XmiI GTMKAC 2 cut(s) 308, 847
XmnI GAANNNNTTC 2 cut(s) 57, 210
XspI CTAG 3 cut(s) 560, 722, 774
Zsp2I ATGCAT 1 cut(s) 895
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.