Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr4

Orthogroup ID

OG0010629

Physical Location & Seq

Genomic Coordinates Reverse (-)

56541116 .. 56542759

Gene Structure 1644 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000019774

Sequence Viewer

CDS Protein Promoter (2k)

Length: 603 bp

ATGTGGTGTGGAACGTGTGGTGTGAAATGTGTGGTGTGGAACATGTGGCATGGAACACTAGACAAAATGCAGAAGATTCATTTTAATATGGGTGTACAGCAAGCAGGCCAGGTTGCGAGAGACGCTTTACTTAGGTCAGCATCTAAAGATCCTAATTCTGGAGGATTTCTCAGAGTTTTTTTTGGGACTAGAGATGGATTTCGACCCTTGTGTGATAGACACACCATGGTTGTGATGATGGATTCGCCCGAGAGCATTTTCTTGACAAAGGAGTTGTATATCATTATTGAGCGGCTGGATGACATGGACTTATCTGATCTTTTGCGCGCCTCACTATTTGAGTTTGATAATCAAGTTCATGTTCAGTGCTTAGGAGTTGCAGGACTCCGATGGTTTTTGTACCAGGCAGTATTTGATTCCGAGGTATCAGCAATGGGAATGTACCTCAGCTGTCAACCGGATCCTAGACTGTCTTGGGTTCGGGTCAAACAGTTTCCTGTGCATCCTGATGGTTGTATGAGTATGGTCCCCGGATATGTAGGGTTTGCTTCTCGCGGCTTGTTGAAGCGAGCACATTATATGAGAAACATCTTGGCATTCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

201

Amino Acids

22.83

Weight (kDa)

8.18

Isoelectric Point (pI)

49.57

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010629)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr7g0217641 RchiOBHm_Chr7g0217651
rosa_laevigata	RLG00000002410 RLG00000002411 RLG00000002452 RLG00000019774
rosa_multiflora	Rmu_sc0000379.1_g000014 Rmu_sc0001300.1_g000006 Rmu_sc0001300.1_g000007 Rmu_sc0002029.1_g000025
rosa_roxburghii	Rroxscaffold_3G00241370
rosa_rugosa	Rorug07G0170600 Rorug07G0170600
rosa_samantha	Rh7AG310700 Rh7AG310800 Rh7AG316100 Rh7BG302300 Rh7BG302400 Rh7CG329700 Rh7DG314900
rosa_wichuraiana	Rw7G026700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	292
AccII	CGCG	2 cut(s)	327, 555
AciI	CCGC	2 cut(s)	292, 555
AclWI	GGATC	3 cut(s)	143, 455, 468
AfaI	GTAC	3 cut(s)	96, 401, 443
AfiI	CCNNNNNNNGG	1 cut(s)	158
AflIII	ACRYGT	2 cut(s)	14, 42
AgsI	TTSAA	1 cut(s)	565
AjnI	CCWGG	2 cut(s)	108, 402
AluBI	AGCT	1 cut(s)	450
AluI	AGCT	1 cut(s)	450
Alw21I	GWGCWC	1 cut(s)	574
Alw26I	GTCTC	1 cut(s)	114
AlwI	GGATC	3 cut(s)	143, 455, 468
Ama87I	CYCGRG	1 cut(s)	248
AoxI	GGCC	1 cut(s)	106
AspLEI	GCGC	2 cut(s)	327, 329
AspS9I	GGNCC	1 cut(s)	526
AsuC2I	CCSGG	1 cut(s)	531
AvaI	CYCGRG	1 cut(s)	248
AvaII	GGWCC	1 cut(s)	526
BamHI	GGATCC	1 cut(s)	460
Bbv12I	GWGCWC	1 cut(s)	574
BbvCI	CCTCAGC	1 cut(s)	446
BccI	CCATC	4 cut(s)	188, 232, 384, 503
BciT130I	CCWGG	2 cut(s)	110, 404
BcnI	CCSGG	1 cut(s)	531
BcoDI	GTCTC	1 cut(s)	114
BfaI	CTAG	4 cut(s)	59, 189, 465, 601
BisI	GCNGC	2 cut(s)	293, 556
BlsI	GCNGC	2 cut(s)	294, 557
Bme1390I	CCNGG	3 cut(s)	110, 404, 531
Bme18I	GGWCC	1 cut(s)	526
BmeT110I	CYCGRG	1 cut(s)	248
BmgT120I	GGNCC	1 cut(s)	526
BmiI	GGNNCC	2 cut(s)	462, 528
BmrFI	CCNGG	3 cut(s)	110, 404, 531
BmsI	GCATC	2 cut(s)	149, 511
BplI	GAGNNNNNCTC	2 cut(s)	153, 185
BpmI	CTGGAG	1 cut(s)	180
Bpu10I	CCTNAGC	2 cut(s)	370, 446
BpuMI	CCSGG	1 cut(s)	531
BsaJI	CCNNGG	3 cut(s)	225, 420, 529
BsaWI	WCCGGW	1 cut(s)	457
Bsc4I	CCNNNNNNNGG	1 cut(s)	158
Bse3DI	GCAATG	1 cut(s)	438
BseBI	CCWGG	2 cut(s)	110, 404
BseDI	CCNNGG	3 cut(s)	225, 420, 529
BseGI	GGATG	2 cut(s)	304, 502
BseLI	CCNNNNNNNGG	1 cut(s)	158
BseMI	GCAATG	1 cut(s)	438
BseMII	CTCAG	2 cut(s)	184, 460
BsePI	GCGCGC	1 cut(s)	325
Bsh1236I	CGCG	2 cut(s)	327, 555
BshFI	GGCC	1 cut(s)	108
BsiHKAI	GWGCWC	1 cut(s)	574
BsiHKCI	CYCGRG	1 cut(s)	248
BsiSI	CCGG	2 cut(s)	458, 531
BslFI	GGGAC	2 cut(s)	199, 512
BslI	CCNNNNNNNGG	1 cut(s)	158
BsmAI	GTCTC	1 cut(s)	114
BsmBI	CGTCTC	1 cut(s)	114
BsmFI	GGGAC	2 cut(s)	199, 512
BsmI	GAATGC	1 cut(s)	596
BsnI	GGCC	1 cut(s)	108
BsoBI	CYCGRG	1 cut(s)	248
Bsp1286I	GDGCHC	1 cut(s)	574
Bsp1407I	TGTACA	1 cut(s)	94
Bsp143I	GATC	3 cut(s)	148, 316, 460
Bsp19I	CCATGG	1 cut(s)	225
BspACI	CCGC	2 cut(s)	292, 555
BspANI	GGCC	1 cut(s)	108
BspCNI	CTCAG	2 cut(s)	183, 459
BspFNI	CGCG	2 cut(s)	327, 555
BspLI	GGNNCC	2 cut(s)	462, 528
BspPI	GGATC	3 cut(s)	143, 455, 468
BsrBI	CCGCTC	1 cut(s)	292
BsrDI	GCAATG	1 cut(s)	438
BsrGI	TGTACA	1 cut(s)	94
BssECI	CCNNGG	3 cut(s)	225, 420, 529
BssHII	GCGCGC	1 cut(s)	325
BssMI	GATC	3 cut(s)	148, 316, 460
BssT1I	CCWWGG	1 cut(s)	225
Bst2UI	CCWGG	2 cut(s)	110, 404
Bst4CI	ACNGT	2 cut(s)	471, 492
BstAUI	TGTACA	1 cut(s)	94
BstC8I	GCNNGC	4 cut(s)	102, 106, 327, 570
BstDEI	CTNAG	4 cut(s)	131, 170, 370, 446
BstDSI	CCRYGG	1 cut(s)	225
BstF5I	GGATG	2 cut(s)	304, 502
BstFNI	CGCG	2 cut(s)	327, 555
BstHHI	GCGC	2 cut(s)	327, 329
BstKTI	GATC	3 cut(s)	151, 319, 463
BstMAI	GTCTC	1 cut(s)	114
BstMBI	GATC	3 cut(s)	148, 316, 460
BstMWI	GCNNNNNNNGC	1 cut(s)	122
BstNI	CCWGG	2 cut(s)	110, 404
BstNSI	RCATGY	1 cut(s)	46
BstSCI	CCNGG	3 cut(s)	108, 402, 529
BstUI	CGCG	2 cut(s)	327, 555
BstX2I	RGATCY	2 cut(s)	148, 460
BstYI	RGATCY	2 cut(s)	148, 460
BsuRI	GGCC	1 cut(s)	108
BtgI	CCRYGG	1 cut(s)	225
BtsCI	GGATG	2 cut(s)	304, 502
BtsIMutI	CAGTG	1 cut(s)	371
Cac8I	GCNNGC	4 cut(s)	102, 106, 327, 570
CfoI	GCGC	2 cut(s)	327, 329
Cfr13I	GGNCC	1 cut(s)	526
CseI	GACGC	1 cut(s)	131
Csp6I	GTAC	3 cut(s)	95, 400, 442
CviAII	CATG	5 cut(s)	43, 50, 226, 304, 359
CviJI	RGCY	4 cut(s)	108, 295, 450, 558
CviKI_1	RGCY	4 cut(s)	108, 295, 450, 558
CviQI	GTAC	3 cut(s)	95, 400, 442
DdeI	CTNAG	4 cut(s)	131, 170, 370, 446
DpnI	GATC	3 cut(s)	150, 318, 462
DpnII	GATC	3 cut(s)	148, 316, 460
Eco130I	CCWWGG	1 cut(s)	225
Eco47I	GGWCC	1 cut(s)	526
Eco88I	CYCGRG	1 cut(s)	248
EcoRII	CCWGG	2 cut(s)	108, 402
EcoT14I	CCWWGG	1 cut(s)	225
ErhI	CCWWGG	1 cut(s)	225
Esp3I	CGTCTC	1 cut(s)	114
FaeI	CATG	5 cut(s)	46, 53, 229, 307, 362
FaqI	GGGAC	2 cut(s)	199, 512
FatI	CATG	5 cut(s)	42, 49, 225, 303, 358
Fnu4HI	GCNGC	2 cut(s)	293, 556
FokI	GGATG	2 cut(s)	311, 489
Fsp4HI	GCNGC	2 cut(s)	293, 556
FspBI	CTAG	4 cut(s)	59, 189, 465, 601
GlaI	GCGC	2 cut(s)	326, 328
GluI	GCNGC	2 cut(s)	293, 556
GsuI	CTGGAG	1 cut(s)	180
HaeIII	GGCC	1 cut(s)	108
HapII	CCGG	2 cut(s)	458, 531
HgaI	GACGC	1 cut(s)	131
HhaI	GCGC	2 cut(s)	327, 329
Hin1II	CATG	5 cut(s)	46, 53, 229, 307, 362
Hin6I	GCGC	2 cut(s)	325, 327
HinP1I	GCGC	2 cut(s)	325, 327
HincII	GTYRAC	1 cut(s)	455
HindII	GTYRAC	1 cut(s)	455
HinfI	GANTC	4 cut(s)	76, 242, 384, 416
HpaII	CCGG	2 cut(s)	458, 531
Hpy166II	GTNNAC	2 cut(s)	95, 455
Hpy188I	TCNGA	4 cut(s)	173, 316, 389, 421
Hpy188III	TCNNGA	3 cut(s)	159, 262, 506
Hpy8I	GTNNAC	2 cut(s)	95, 455
HpyCH4III	ACNGT	2 cut(s)	471, 492
HpyCH4IV	ACGT	1 cut(s)	14
HpyCH4V	TGCA	3 cut(s)	70, 380, 502
HpyF10VI	GCNNNNNNNGC	1 cut(s)	122
HpyF3I	CTNAG	4 cut(s)	131, 170, 370, 446
HpySE526I	ACGT	1 cut(s)	14
Hsp92II	CATG	5 cut(s)	46, 53, 229, 307, 362
HspAI	GCGC	2 cut(s)	325, 327
Kzo9I	GATC	3 cut(s)	148, 316, 460
LweI	GCATC	2 cut(s)	149, 511
MaeI	CTAG	4 cut(s)	59, 189, 465, 601
MaeII	ACGT	1 cut(s)	14
MalI	GATC	3 cut(s)	150, 318, 462
MbiI	CCGCTC	1 cut(s)	292
MboI	GATC	3 cut(s)	148, 316, 460
MboII	GAAGA	1 cut(s)	85
MflI	RGATCY	2 cut(s)	148, 460
MhlI	GDGCHC	1 cut(s)	574
MluCI	AATT	1 cut(s)	154
MlyI	GAGTC	1 cut(s)	378
MnlI	CCTC	4 cut(s)	155, 340, 415, 455
MseI	TTAA	1 cut(s)	84
MslI	CAYNNNNRTG	2 cut(s)	230, 507
MspA1I	CMGCKG	1 cut(s)	450
MspI	CCGG	2 cut(s)	458, 531
MspR9I	CCNGG	3 cut(s)	110, 404, 531
Mva1269I	GAATGC	1 cut(s)	596
MvaI	CCWGG	2 cut(s)	110, 404
MvnI	CGCG	2 cut(s)	327, 555
MwoI	GCNNNNNNNGC	1 cut(s)	122
NciI	CCSGG	1 cut(s)	531
NcoI	CCATGG	1 cut(s)	225
NdeII	GATC	3 cut(s)	148, 316, 460
NlaIII	CATG	5 cut(s)	46, 53, 229, 307, 362
NlaIV	GGNNCC	2 cut(s)	462, 528
NspI	RCATGY	1 cut(s)	46
PauI	GCGCGC	1 cut(s)	325
PciI	ACATGT	1 cut(s)	42
PctI	GAATGC	1 cut(s)	596
PfeI	GAWTC	3 cut(s)	76, 242, 416
PkrI	GCNGC	2 cut(s)	294, 557
PleI	GAGTC	1 cut(s)	378
PpsI	GAGTC	1 cut(s)	378
PscI	ACATGT	1 cut(s)	42
Psp6I	CCWGG	2 cut(s)	108, 402
PspGI	CCWGG	2 cut(s)	108, 402
PspN4I	GGNNCC	2 cut(s)	462, 528
PspPI	GGNCC	1 cut(s)	526
PsuI	RGATCY	2 cut(s)	148, 460
PteI	GCGCGC	1 cut(s)	325
PvuII	CAGCTG	1 cut(s)	450
RsaI	GTAC	3 cut(s)	96, 401, 443
RsaNI	GTAC	3 cut(s)	95, 400, 442
RseI	CAYNNNNRTG	2 cut(s)	230, 507
SaqAI	TTAA	1 cut(s)	84
SatI	GCNGC	2 cut(s)	293, 556
Sau3AI	GATC	3 cut(s)	148, 316, 460
Sau96I	GGNCC	1 cut(s)	526
SchI	GAGTC	1 cut(s)	378
ScrFI	CCNGG	3 cut(s)	110, 404, 531
SduI	GDGCHC	1 cut(s)	574
SetI	ASST	6 cut(s)	17, 114, 137, 426, 447, 452
SfaNI	GCATC	2 cut(s)	149, 511
SinI	GGWCC	1 cut(s)	526
SmiMI	CAYNNNNRTG	2 cut(s)	230, 507
Sse9I	AATT	1 cut(s)	154
SsiI	CCGC	2 cut(s)	292, 555
SspMI	CTAG	4 cut(s)	59, 189, 465, 601
StyD4I	CCNGG	3 cut(s)	108, 402, 529
StyI	CCWWGG	1 cut(s)	225
TaaI	ACNGT	2 cut(s)	471, 492
TaiI	ACGT	1 cut(s)	17
TaqI	TCGA	1 cut(s)	202
TasI	AATT	1 cut(s)	154
TatI	WGTACW	1 cut(s)	94
TauI	GCSGC	2 cut(s)	295, 558
TfiI	GAWTC	3 cut(s)	76, 242, 416
Tru1I	TTAA	1 cut(s)	84
Tru9I	TTAA	1 cut(s)	84
TscAI	CASTG	1 cut(s)	371
TspDTI	ATGAA	2 cut(s)	68, 347
TspRI	CASTG	1 cut(s)	371
VpaK11BI	GGWCC	1 cut(s)	526
XceI	RCATGY	1 cut(s)	46
XspI	CTAG	4 cut(s)	59, 189, 465, 601

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.