Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0001300.1

Orthogroup ID

OG0010629

Physical Location & Seq

Genomic Coordinates Reverse (-)

31356 .. 31802

Gene Structure 447 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0001300.1_g000007.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 447 bp

atggcagtacccaaagtacagaggagagcagcagcaatgcaaataatacttccagttacggacttaatacacataccagatctccatttactgaaggaggatgatttgaaactcatgggacagtttataaaggactacagagtacatcctgagatctggttctcacttctgacaagaatcagatattctcgtgccttccattcaccaagaacctgcaagcttggccttcttgcatttactgtgcttgttcatgctagtgatgctcctgaagaacttctgtctttctttgctaatgagccagactatattaatagatcaattagaattgtgccatcagaagtagtttctggaaccattagaacaaatacaatgcttgccttattgaagatcatgcaccaaccgtcttgtccactgcatcacattgttagcgtttctgcttctgcataa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004842 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005739 GO:0005829 GO:0006464 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0032446 GO:0036211 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0061630 GO:0061659 GO:0070647 GO:0071704 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko04120 map04120

Pfam Domains

Protein Families

DUF4414 DUF908 DUF913 HECT UBA

Protein Analysis

148

Amino Acids

16.76

Weight (kDa)

9.06

Isoelectric Point (pI)

44.43

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010629)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr7g0217641 RchiOBHm_Chr7g0217651
rosa_laevigata	RLG00000002410 RLG00000002411 RLG00000002452 RLG00000019774
rosa_multiflora	Rmu_sc0000379.1_g000014 Rmu_sc0001300.1_g000006 Rmu_sc0001300.1_g000007 Rmu_sc0002029.1_g000025
rosa_roxburghii	Rroxscaffold_3G00241370
rosa_rugosa	Rorug07G0170600 Rorug07G0170600
rosa_samantha	Rh7AG310700 Rh7AG310800 Rh7AG316100 Rh7BG302300 Rh7BG302400 Rh7CG329700 Rh7DG314900
rosa_wichuraiana	Rw7G026700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	128
Acc36I	ACCTGC	1 cut(s)	221
AcuI	CTGAAG	2 cut(s)	113, 288
AfaI	GTAC	3 cut(s)	9, 18, 144
AgsI	TTSAA	2 cut(s)	109, 385
AluBI	AGCT	1 cut(s)	220
AluI	AGCT	1 cut(s)	220
AoxI	GGCC	1 cut(s)	223
ApeKI	GCWGC	2 cut(s)	29, 32
AseI	ATTAAT	1 cut(s)	309
Asp700I	GAANNNNTTC	1 cut(s)	273
AsuHPI	GGTGA	1 cut(s)	195
BauI	CACGAG	1 cut(s)	189
BbvI	GCAGC	2 cut(s)	41, 44
BccI	CCATC	1 cut(s)	340
BfaI	CTAG	1 cut(s)	255
BfmI	CTRYAG	1 cut(s)	136
BfuAI	ACCTGC	1 cut(s)	221
BglII	AGATCT	2 cut(s)	79, 153
BisI	GCNGC	2 cut(s)	30, 33
BlsI	GCNGC	2 cut(s)	31, 34
BmiI	GGNNCC	1 cut(s)	352
BmsI	GCATC	2 cut(s)	250, 424
BsaXI	ACNNNNNCTCC	2 cut(s)	66, 96
Bse1I	ACTGG	1 cut(s)	53
Bse3DI	GCAATG	1 cut(s)	42
BseGI	GGATG	2 cut(s)	106, 145
BseMI	GCAATG	1 cut(s)	42
BseMII	CTCAG	1 cut(s)	141
BseNI	ACTGG	1 cut(s)	53
BseRI	GAGGAG	1 cut(s)	37
BseXI	GCAGC	2 cut(s)	41, 44
BshFI	GGCC	1 cut(s)	225
BslFI	GGGAC	1 cut(s)	132
BsmFI	GGGAC	1 cut(s)	132
BsnI	GGCC	1 cut(s)	225
Bsp143I	GATC	4 cut(s)	79, 153, 314, 387
BspANI	GGCC	1 cut(s)	225
BspCNI	CTCAG	1 cut(s)	142
BspLI	GGNNCC	1 cut(s)	352
BspMI	ACCTGC	1 cut(s)	221
BsrDI	GCAATG	1 cut(s)	42
BsrI	ACTGG	1 cut(s)	53
BssMI	GATC	4 cut(s)	79, 153, 314, 387
BssSI	CACGAG	1 cut(s)	189
Bst2BI	CACGAG	1 cut(s)	189
Bst4CI	ACNGT	3 cut(s)	123, 241, 402
BstC8I	GCNNGC	2 cut(s)	218, 375
BstDEI	CTNAG	1 cut(s)	150
BstF5I	GGATG	2 cut(s)	106, 145
BstKTI	GATC	4 cut(s)	82, 156, 317, 390
BstMBI	GATC	4 cut(s)	79, 153, 314, 387
BstMWI	GCNNNNNNNGC	2 cut(s)	222, 260
BstSFI	CTRYAG	1 cut(s)	136
BstV1I	GCAGC	2 cut(s)	41, 44
BstX2I	RGATCY	2 cut(s)	79, 153
BstYI	RGATCY	2 cut(s)	79, 153
BsuRI	GGCC	1 cut(s)	225
BtsCI	GGATG	2 cut(s)	106, 145
BtsI	GCAGTG	1 cut(s)	410
BtsIMutI	CAGTG	1 cut(s)	410
BveI	ACCTGC	1 cut(s)	221
Cac8I	GCNNGC	2 cut(s)	218, 375
Csp6I	GTAC	3 cut(s)	8, 17, 143
CviAII	CATG	3 cut(s)	115, 251, 391
CviJI	RGCY	3 cut(s)	220, 225, 298
CviKI_1	RGCY	3 cut(s)	220, 225, 298
CviQI	GTAC	3 cut(s)	8, 17, 143
DdeI	CTNAG	1 cut(s)	150
DpnI	GATC	4 cut(s)	81, 155, 316, 389
DpnII	GATC	4 cut(s)	79, 153, 314, 387
Eco57I	CTGAAG	2 cut(s)	113, 288
FaeI	CATG	3 cut(s)	118, 254, 394
FaiI	YATR	7 cut(s)	74, 116, 128, 252, 306, 392, 445
FaqI	GGGAC	1 cut(s)	132
FatI	CATG	3 cut(s)	114, 250, 390
Fnu4HI	GCNGC	2 cut(s)	30, 33
FokI	GGATG	2 cut(s)	113, 132
Fsp4HI	GCNGC	2 cut(s)	30, 33
FspBI	CTAG	1 cut(s)	255
GluI	GCNGC	2 cut(s)	30, 33
HaeIII	GGCC	1 cut(s)	225
Hin1II	CATG	3 cut(s)	118, 254, 394
HindIII	AAGCTT	1 cut(s)	218
HinfI	GANTC	1 cut(s)	177
HphI	GGTGA	1 cut(s)	195
Hpy166II	GTNNAC	1 cut(s)	410
Hpy188I	TCNGA	3 cut(s)	171, 182, 337
Hpy188III	TCNNGA	3 cut(s)	149, 266, 348
Hpy8I	GTNNAC	1 cut(s)	410
HpyAV	CCTTC	3 cut(s)	88, 205, 236
HpyCH4III	ACNGT	3 cut(s)	123, 241, 402
HpyCH4V	TGCA	6 cut(s)	40, 216, 233, 394, 415, 443
HpyF10VI	GCNNNNNNNGC	2 cut(s)	222, 260
HpyF3I	CTNAG	1 cut(s)	150
Hsp92II	CATG	3 cut(s)	118, 254, 394
Kzo9I	GATC	4 cut(s)	79, 153, 314, 387
LmnI	GCTCC	1 cut(s)	268
LpnPI	CCDG	8 cut(s)	66, 90, 142, 162, 226, 279, 312, 333
Lsp1109I	GCAGC	2 cut(s)	41, 44
LweI	GCATC	2 cut(s)	250, 424
MaeI	CTAG	1 cut(s)	255
MaeIII	GTNAC	1 cut(s)	55
MalI	GATC	4 cut(s)	81, 155, 316, 389
MboI	GATC	4 cut(s)	79, 153, 314, 387
MboII	GAAGA	2 cut(s)	281, 397
MflI	RGATCY	2 cut(s)	79, 153
MluCI	AATT	2 cut(s)	318, 324
MnlI	CCTC	2 cut(s)	15, 91
MroXI	GAANNNNTTC	1 cut(s)	273
MseI	TTAA	2 cut(s)	65, 309
MslI	CAYNNNNRTG	1 cut(s)	255
MwoI	GCNNNNNNNGC	2 cut(s)	222, 260
NdeII	GATC	4 cut(s)	79, 153, 314, 387
NlaIII	CATG	3 cut(s)	118, 254, 394
NlaIV	GGNNCC	1 cut(s)	352
PdmI	GAANNNNTTC	1 cut(s)	273
PfeI	GAWTC	1 cut(s)	177
PkrI	GCNGC	2 cut(s)	31, 34
PshBI	ATTAAT	1 cut(s)	309
PsiI	TTATAA	1 cut(s)	128
PspN4I	GGNNCC	1 cut(s)	352
PsuI	RGATCY	2 cut(s)	79, 153
RsaI	GTAC	3 cut(s)	9, 18, 144
RsaNI	GTAC	3 cut(s)	8, 17, 143
RseI	CAYNNNNRTG	1 cut(s)	255
SaqAI	TTAA	2 cut(s)	65, 309
SatI	GCNGC	2 cut(s)	30, 33
Sau3AI	GATC	4 cut(s)	79, 153, 314, 387
SetI	ASST	2 cut(s)	215, 222
SfaNI	GCATC	2 cut(s)	250, 424
SfcI	CTRYAG	1 cut(s)	136
SmiMI	CAYNNNNRTG	1 cut(s)	255
Sse9I	AATT	2 cut(s)	318, 324
SspMI	CTAG	1 cut(s)	255
TaaI	ACNGT	3 cut(s)	123, 241, 402
TasI	AATT	2 cut(s)	318, 324
TatI	WGTACW	2 cut(s)	16, 142
TfiI	GAWTC	1 cut(s)	177
Tru1I	TTAA	2 cut(s)	65, 309
Tru9I	TTAA	2 cut(s)	65, 309
TscAI	CASTG	1 cut(s)	417
TseI	GCWGC	2 cut(s)	29, 32
TspDTI	ATGAA	1 cut(s)	239
TspGWI	ACGGA	1 cut(s)	74
TspRI	CASTG	1 cut(s)	417
VspI	ATTAAT	1 cut(s)	309
XmnI	GAANNNNTTC	1 cut(s)	273
XspI	CTAG	1 cut(s)	255

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.