Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr1

Orthogroup ID

OG0010629

Physical Location & Seq

Genomic Coordinates Forward (+)

34386903 .. 34390211

Gene Structure 3309 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000002452

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1110 bp

ATGTTGCTGTTTCAATTCCTAGTTAACATTCTTGAAGGAGATTTTCAACCTGGCAACTGTGTCTATGCGGAAATTGCAAACTGGGTCCTTCTGAGAGAGTCTTTGCTCAACATGCTTTTGAGAGAATCACCAGAGCAAGAAGCCTCTGAAGACGAAAGTCTAGGTGATAGAGAGTCCATCACTAGATATAGCAATTCCTCTTTCCGGTTCCTGTTGCGGTTAAAGCAAGTGCTACAAACTTTGATACAGACGATCATAGAGAATTTCCATAACAGGAGTTCATTTGATGGCTTAGAGCATTTCAAGCTGCTACTTGCATCAACAGTTCCGAATGTTCTTATAGCTATGCTGGAAAAACTTTCTGCCCTTATGAAAAAACATCCCTCTAAGATGCATATGAGTGAAAAGATGGAGGATGATTTGAAACTCATGAGACAGTTTATAAAGGACTACAGAGTACCTCCTGAGATCTGGTTCTCACTTCTGACAAGAATCAGATATTCTCGTGCCTTCCGTTCACCAAGAACCTGCAAGCTTGGCCTTCTTGCATTTACTGTGCTTGTTCATGCTAGTGATGCTCCTGAAGAACTTCCGTCTTTCTTTGCTAATGAGCCAGACTATATTAATAGATCAATTAGAATTGTGCCATCAGAAGAAGTAGTTTCTGGAACCATCAGAACAAATACAATGCTTGCCTTATCGAAGATCATGCACCAACCCTCATCCACTGCATCACATTGTTCTTCTGGATGTGAGGCTTCCATATCGACAAGATGTTGTGACTTTGCGAAAGTGATTGATATCATTGATGTCAGTCTACTGGAGAGACCAGATTCATGTAATTCAGTTTTCCTCGATTGCTTGTATAGGCATGGAGTTACCCAGTCAGTTTTGACGTATGAAGCTATCAGTCAATTGCTCTGGAGAAGAATATGTCCTGGACTTCCATTCGCAATAAGAATGTTGTACTTGATGTTAGGTTCATTAATTAACTGTTTTGATTGGGAGCTTGAAGATGGAGTTGCACCCGAGACTATGAATATGGAAGATAAGTTTGGCCTCACCTTACAAATGGCTCAGCCTCTGAGAGTCGTGCCTAAGAAGTTATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000151 GO:0003674 GO:0003824 GO:0004842 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005739 GO:0005829 GO:0005911 GO:0006464 GO:0006807 GO:0008150 GO:0008152 GO:0009506 GO:0009987 GO:0016020 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0030054 GO:0032446 GO:0032991 GO:0036211 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0055044 GO:0061630 GO:0061659 GO:0070647 GO:0071704 GO:0140096 GO:1901564 GO:1902494 GO:1990234

KEGG Pathways

Metabolic & Signaling

ko04120 map04120

Pfam Domains

Protein Families

DUF4414 DUF908 DUF913 HECT UBA

Protein Analysis

370

Amino Acids

42.21

Weight (kDa)

5.96

Isoelectric Point (pI)

53.0

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DUF908	PF06012	141 - 246	4.7e-09	Domain of Unknown Function (DUF908)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Orthologous Genes (Group: OG0010629)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr7g0217641 RchiOBHm_Chr7g0217651
rosa_laevigata	RLG00000002410 RLG00000002411 RLG00000002452 RLG00000019774
rosa_multiflora	Rmu_sc0000379.1_g000014 Rmu_sc0001300.1_g000006 Rmu_sc0001300.1_g000007 Rmu_sc0002029.1_g000025
rosa_roxburghii	Rroxscaffold_3G00241370
rosa_rugosa	Rorug07G0170600 Rorug07G0170600
rosa_samantha	Rh7AG310700 Rh7AG310800 Rh7AG316100 Rh7BG302300 Rh7BG302400 Rh7CG329700 Rh7DG314900
rosa_wichuraiana	Rw7G026700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	443
Acc36I	ACCTGC	1 cut(s)	536
AccI	GTMKAC	1 cut(s)	817
AciI	CCGC	2 cut(s)	68, 217
AcsI	RAATTY	1 cut(s)	262
AcuI	CTGAAG	2 cut(s)	168, 603
AfaI	GTAC	2 cut(s)	459, 968
AfiI	CCNNNNNNNGG	1 cut(s)	204
AgsI	TTSAA	6 cut(s)	14, 35, 47, 304, 424, 1013
AjnI	CCWGG	2 cut(s)	49, 937
AjuI	GAANNNNNNNTTGG	2 cut(s)	1038, 1070
AluBI	AGCT	5 cut(s)	307, 344, 535, 905, 1009
AluI	AGCT	5 cut(s)	307, 344, 535, 905, 1009
Alw26I	GTCTC	3 cut(s)	427, 820, 1025
AlwNI	CAGNNNCTG	1 cut(s)	1084
Ama87I	CYCGRG	1 cut(s)	1028
AoxI	GGCC	2 cut(s)	538, 1057
ApeKI	GCWGC	1 cut(s)	307
ApoI	RAATTY	1 cut(s)	262
AseI	ATTAAT	2 cut(s)	624, 986
Asp700I	GAANNNNTTC	1 cut(s)	588
AspS9I	GGNCC	1 cut(s)	85
AsuHPI	GGTGA	4 cut(s)	120, 176, 510, 1054
AvaI	CYCGRG	1 cut(s)	1028
AvaII	GGWCC	1 cut(s)	85
BauI	CACGAG	1 cut(s)	504
BbsI	GAAGAC	1 cut(s)	156
BbvI	GCAGC	1 cut(s)	294
BccI	CCATC	6 cut(s)	185, 281, 403, 655, 680, 1010
BcgI	CGANNNNNNTGC	2 cut(s)	691, 725
BciT130I	CCWGG	2 cut(s)	51, 939
BcoDI	GTCTC	3 cut(s)	427, 820, 1025
BfaI	CTAG	4 cut(s)	20, 161, 183, 570
BfmI	CTRYAG	1 cut(s)	451
BfuAI	ACCTGC	1 cut(s)	536
BglII	AGATCT	1 cut(s)	468
BisI	GCNGC	1 cut(s)	308
BlpI	GCTNAGC	1 cut(s)	1077
BlsI	GCNGC	1 cut(s)	309
Bme1390I	CCNGG	2 cut(s)	51, 939
Bme18I	GGWCC	1 cut(s)	85
BmeT110I	CYCGRG	1 cut(s)	1028
BmgT120I	GGNCC	1 cut(s)	85
BmiI	GGNNCC	3 cut(s)	86, 209, 670
BmrFI	CCNGG	2 cut(s)	51, 939
BmrI	ACTGGG	2 cut(s)	91, 877
BmsI	GCATC	4 cut(s)	326, 381, 565, 740
BmuI	ACTGGG	2 cut(s)	91, 877
BoxI	GACNNNNGTC	1 cut(s)	156
BpiI	GAAGAC	1 cut(s)	156
BpmI	CTGGAG	2 cut(s)	842, 943
Bpu1102I	GCTNAGC	1 cut(s)	1077
BsaBI	GATNNNNATC	1 cut(s)	800
BsaI	GGTCTC	1 cut(s)	820
BsaWI	WCCGGW	1 cut(s)	204
Bsc4I	CCNNNNNNNGG	1 cut(s)	204
Bse1I	ACTGG	3 cut(s)	86, 825, 883
Bse8I	GATNNNNATC	1 cut(s)	800
BseBI	CCWGG	2 cut(s)	51, 939
BseGI	GGATG	4 cut(s)	379, 421, 722, 755
BseJI	GATNNNNATC	1 cut(s)	800
BseLI	CCNNNNNNNGG	1 cut(s)	204
BseMII	CTCAG	4 cut(s)	83, 456, 1076, 1091
BseNI	ACTGG	3 cut(s)	86, 825, 883
BseXI	GCAGC	1 cut(s)	294
BshFI	GGCC	2 cut(s)	540, 1059
BsiHKCI	CYCGRG	1 cut(s)	1028
BsiSI	CCGG	1 cut(s)	205
BslI	CCNNNNNNNGG	1 cut(s)	204
BsmAI	GTCTC	3 cut(s)	427, 820, 1025
BsnI	GGCC	2 cut(s)	540, 1059
Bso31I	GGTCTC	1 cut(s)	820
BsoBI	CYCGRG	1 cut(s)	1028
Bsp143I	GATC	4 cut(s)	252, 468, 629, 705
Bsp1720I	GCTNAGC	1 cut(s)	1077
BspACI	CCGC	2 cut(s)	68, 217
BspANI	GGCC	2 cut(s)	540, 1059
BspCNI	CTCAG	4 cut(s)	84, 457, 1077, 1090
BspHI	TCATGA	1 cut(s)	429
BspLI	GGNNCC	3 cut(s)	86, 209, 670
BspMI	ACCTGC	1 cut(s)	536
BspTNI	GGTCTC	1 cut(s)	820
BsrI	ACTGG	3 cut(s)	86, 825, 883
BssMI	GATC	4 cut(s)	252, 468, 629, 705
BssSI	CACGAG	1 cut(s)	504
Bst2BI	CACGAG	1 cut(s)	504
Bst2UI	CCWGG	2 cut(s)	51, 939
Bst4CI	ACNGT	5 cut(s)	59, 325, 438, 556, 995
BstC8I	GCNNGC	2 cut(s)	533, 693
BstDEI	CTNAG	7 cut(s)	92, 292, 387, 465, 1077, 1085, 1098
BstF5I	GGATG	4 cut(s)	379, 421, 722, 755
BstKTI	GATC	4 cut(s)	255, 471, 632, 708
BstMAI	GTCTC	3 cut(s)	427, 820, 1025
BstMBI	GATC	4 cut(s)	252, 468, 629, 705
BstMWI	GCNNNNNNNGC	6 cut(s)	74, 112, 223, 304, 537, 575
BstNI	CCWGG	2 cut(s)	51, 939
BstNSI	RCATGY	1 cut(s)	115
BstPAI	GACNNNNGTC	1 cut(s)	156
BstSCI	CCNGG	2 cut(s)	49, 937
BstSFI	CTRYAG	1 cut(s)	451
BstV1I	GCAGC	1 cut(s)	294
BstV2I	GAAGAC	1 cut(s)	156
BstX2I	RGATCY	1 cut(s)	468
BstYI	RGATCY	1 cut(s)	468
BsuRI	GGCC	2 cut(s)	540, 1059
BtsCI	GGATG	4 cut(s)	379, 421, 722, 755
BtsI	GCAGTG	1 cut(s)	726
BtsIMutI	CAGTG	1 cut(s)	726
BveI	ACCTGC	1 cut(s)	536
Cac8I	GCNNGC	2 cut(s)	533, 693
CaiI	CAGNNNCTG	1 cut(s)	1084
CciI	TCATGA	1 cut(s)	429
Cfr13I	GGNCC	1 cut(s)	85
Csp6I	GTAC	2 cut(s)	458, 967
CviAII	CATG	6 cut(s)	112, 430, 566, 709, 837, 872
CviQI	GTAC	2 cut(s)	458, 967
DdeI	CTNAG	7 cut(s)	92, 292, 387, 465, 1077, 1085, 1098
DpnI	GATC	4 cut(s)	254, 470, 631, 707
DpnII	GATC	4 cut(s)	252, 468, 629, 705
Eco31I	GGTCTC	1 cut(s)	820
Eco32I	GATATC	1 cut(s)	802
Eco47I	GGWCC	1 cut(s)	85
Eco57I	CTGAAG	2 cut(s)	168, 603
Eco88I	CYCGRG	1 cut(s)	1028
EcoO109I	RGGNCCY	1 cut(s)	85
EcoRII	CCWGG	2 cut(s)	49, 937
EcoRV	GATATC	1 cut(s)	802
EcoT22I	ATGCAT	1 cut(s)	396
FaeI	CATG	6 cut(s)	115, 433, 569, 712, 840, 875
FatI	CATG	6 cut(s)	111, 429, 565, 708, 836, 871
FauNDI	CATATG	1 cut(s)	396
FblI	GTMKAC	1 cut(s)	817
Fnu4HI	GCNGC	1 cut(s)	308
FokI	GGATG	4 cut(s)	366, 428, 709, 762
Fsp4HI	GCNGC	1 cut(s)	308
FspBI	CTAG	4 cut(s)	20, 161, 183, 570
GluI	GCNGC	1 cut(s)	308
GsuI	CTGGAG	2 cut(s)	842, 943
HaeIII	GGCC	2 cut(s)	540, 1059
HapII	CCGG	1 cut(s)	205
Hin1II	CATG	6 cut(s)	115, 433, 569, 712, 840, 875
HincII	GTYRAC	1 cut(s)	25
HindII	GTYRAC	1 cut(s)	25
HindIII	AAGCTT	1 cut(s)	533
HinfI	GANTC	6 cut(s)	98, 125, 173, 492, 833, 1089
HpaI	GTTAAC	1 cut(s)	25
HpaII	CCGG	1 cut(s)	205
HphI	GGTGA	4 cut(s)	120, 176, 510, 1054
Hpy166II	GTNNAC	3 cut(s)	25, 518, 818
Hpy188I	TCNGA	8 cut(s)	93, 148, 330, 486, 497, 652, 677, 1086
Hpy188III	TCNNGA	7 cut(s)	32, 430, 464, 581, 666, 747, 922
Hpy8I	GTNNAC	3 cut(s)	25, 518, 818
HpyAV	CCTTC	4 cut(s)	29, 98, 520, 551
HpyCH4III	ACNGT	5 cut(s)	59, 325, 438, 556, 995
HpyCH4IV	ACGT	1 cut(s)	896
HpyCH4V	TGCA	8 cut(s)	77, 317, 394, 531, 548, 712, 731, 1025
HpyF10VI	GCNNNNNNNGC	6 cut(s)	74, 112, 223, 304, 537, 575
HpyF3I	CTNAG	7 cut(s)	92, 292, 387, 465, 1077, 1085, 1098
HpySE526I	ACGT	1 cut(s)	896
Hsp92II	CATG	6 cut(s)	115, 433, 569, 712, 840, 875
KspAI	GTTAAC	1 cut(s)	25
Kzo9I	GATC	4 cut(s)	252, 468, 629, 705
LmnI	GCTCC	2 cut(s)	583, 1006
Lsp1109I	GCAGC	1 cut(s)	294
LweI	GCATC	4 cut(s)	326, 381, 565, 740
MaeI	CTAG	4 cut(s)	20, 161, 183, 570
MaeII	ACGT	1 cut(s)	896
MaeIII	GTNAC	2 cut(s)	779, 877
MalI	GATC	4 cut(s)	254, 470, 631, 707
MboI	GATC	4 cut(s)	252, 468, 629, 705
MboII	GAAGA	8 cut(s)	161, 596, 665, 715, 735, 939, 1025, 1058
MfeI	CAATTG	1 cut(s)	914
MflI	RGATCY	1 cut(s)	468
MluCI	AATT	9 cut(s)	14, 72, 193, 262, 633, 639, 841, 914, 987
MlyI	GAGTC	3 cut(s)	107, 182, 1098
Mph1103I	ATGCAT	1 cut(s)	396
MroXI	GAANNNNTTC	1 cut(s)	588
MseI	TTAA	5 cut(s)	24, 221, 624, 986, 990
MslI	CAYNNNNRTG	2 cut(s)	399, 570
MspI	CCGG	1 cut(s)	205
MspR9I	CCNGG	2 cut(s)	51, 939
MunI	CAATTG	1 cut(s)	914
MvaI	CCWGG	2 cut(s)	51, 939
MwoI	GCNNNNNNNGC	6 cut(s)	74, 112, 223, 304, 537, 575
NdeI	CATATG	1 cut(s)	396
NdeII	GATC	4 cut(s)	252, 468, 629, 705
NlaIII	CATG	6 cut(s)	115, 433, 569, 712, 840, 875
NlaIV	GGNNCC	3 cut(s)	86, 209, 670
NmuCI	GTSAC	1 cut(s)	779
NsiI	ATGCAT	1 cut(s)	396
NspI	RCATGY	1 cut(s)	115
PacI	TTAATTAA	1 cut(s)	990
PagI	TCATGA	1 cut(s)	429
PcsI	WCGNNNNNNNCGW	1 cut(s)	511
PdmI	GAANNNNTTC	1 cut(s)	588
PfeI	GAWTC	3 cut(s)	125, 492, 833
PfoI	TCCNGGA	1 cut(s)	937
PkrI	GCNGC	1 cut(s)	309
PleI	GAGTC	3 cut(s)	106, 181, 1097
PpsI	GAGTC	3 cut(s)	106, 181, 1097
PpuMI	RGGWCCY	1 cut(s)	85
PshAI	GACNNNNGTC	1 cut(s)	156
PshBI	ATTAAT	2 cut(s)	624, 986
PsiI	TTATAA	1 cut(s)	443
Psp5II	RGGWCCY	1 cut(s)	85
Psp6I	CCWGG	2 cut(s)	49, 937
PspGI	CCWGG	2 cut(s)	49, 937
PspN4I	GGNNCC	3 cut(s)	86, 209, 670
PspPI	GGNCC	1 cut(s)	85
PspPPI	RGGWCCY	1 cut(s)	85
PstNI	CAGNNNCTG	1 cut(s)	1084
PsuI	RGATCY	1 cut(s)	468
RsaI	GTAC	2 cut(s)	459, 968
RsaNI	GTAC	2 cut(s)	458, 967
RseI	CAYNNNNRTG	2 cut(s)	399, 570
SaqAI	TTAA	5 cut(s)	24, 221, 624, 986, 990
SatI	GCNGC	1 cut(s)	308
Sau3AI	GATC	4 cut(s)	252, 468, 629, 705
Sau96I	GGNCC	1 cut(s)	85
SchI	GAGTC	3 cut(s)	107, 182, 1098
ScrFI	CCNGG	2 cut(s)	51, 939
SfaNI	GCATC	4 cut(s)	326, 381, 565, 740
SfcI	CTRYAG	1 cut(s)	451
SinI	GGWCC	1 cut(s)	85
SmiMI	CAYNNNNRTG	2 cut(s)	399, 570
Sse9I	AATT	9 cut(s)	14, 72, 193, 262, 633, 639, 841, 914, 987
SsiI	CCGC	2 cut(s)	68, 217
SspMI	CTAG	4 cut(s)	20, 161, 183, 570
StyD4I	CCNGG	2 cut(s)	49, 937
TaaI	ACNGT	5 cut(s)	59, 325, 438, 556, 995
TaiI	ACGT	1 cut(s)	899
TaqI	TCGA	3 cut(s)	701, 767, 855
TasI	AATT	9 cut(s)	14, 72, 193, 262, 633, 639, 841, 914, 987
TatI	WGTACW	1 cut(s)	966
TfiI	GAWTC	3 cut(s)	125, 492, 833
Tru1I	TTAA	5 cut(s)	24, 221, 624, 986, 990
Tru9I	TTAA	5 cut(s)	24, 221, 624, 986, 990
TscAI	CASTG	1 cut(s)	733
TseFI	GTSAC	1 cut(s)	779
TseI	GCWGC	1 cut(s)	307
Tsp45I	GTSAC	1 cut(s)	779
TspDTI	ATGAA	7 cut(s)	270, 386, 554, 825, 915, 972, 1052
TspGWI	ACGGA	2 cut(s)	503, 582
TspRI	CASTG	1 cut(s)	733
VpaK11BI	GGWCC	1 cut(s)	85
VspI	ATTAAT	2 cut(s)	624, 986
XapI	RAATTY	1 cut(s)	262
XceI	RCATGY	1 cut(s)	115
XmiI	GTMKAC	1 cut(s)	817
XmnI	GAANNNNTTC	1 cut(s)	588
XspI	CTAG	4 cut(s)	20, 161, 183, 570
Zsp2I	ATGCAT	1 cut(s)	396

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.